RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780755|ref|YP_003065168.1| octaprenyl-diphosphate
synthase protein [Candidatus Liberibacter asiaticus str. psy62]
(322 letters)
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.
Length = 323
Score = 267 bits (685), Expect = 2e-72
Identities = 135/316 (42%), Positives = 193/316 (61%), Gaps = 1/316 (0%)
Query: 6 DLTLKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHV 65
+LT +DM VN IL+++ SDV++I + Y+I GGKR+RPM+ + A + Y+G+ HV
Sbjct: 8 ELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGGGKRIRPMIAVLAARAVGYQGNAHV 67
Query: 66 LLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETK 125
+A IEFIHTATLLHDDVVD+S +RRGK A +GN SVLVGDF+ ++AF M+
Sbjct: 68 TIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLG 127
Query: 126 SQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAG 185
S + LE +S +AEGE+ QL + D+TEE+Y+ VI SKTA LF AA + S ++AG
Sbjct: 128 SLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAG 187
Query: 186 VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRG 245
+ L+ YG LG AFQL+DD+LDY + +GKN+G+D GKPTLP++ A G
Sbjct: 188 CTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHHG 247
Query: 246 TKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSS 305
T + ++ I G L+ M +L T RA KA +L+ LPD+
Sbjct: 248 TPEQAAMIRTAIEQGN-GRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTP 306
Query: 306 WKKSLMEVVDFCLQRL 321
W+++L+ + +QR
Sbjct: 307 WREALIGLAHIAVQRD 322
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase. Members
of this family all are from cyanobacteria or
plastid-containing eukaryotes. A member from Arabidopsis
(where both plastoquinone and ubiquinone contain the
C(45) prenyl moiety) was characterized by heterologous
expression as a solanesyl diphosphate synthase.
Length = 322
Score = 183 bits (467), Expect = 4e-47
Identities = 104/292 (35%), Positives = 162/292 (55%), Gaps = 12/292 (4%)
Query: 35 KYLIFSGGKRLRPMLTL----ATALMLEYRGDNHVLLACAIEFIHTATLLHDDVVDDSAL 90
++L +GGKRLRP + L ATA E H LA E IHTA+L+HDDV+D+S
Sbjct: 37 EHLFSAGGKRLRPAIVLLVSRATAEQQELT-PRHRRLAEITEMIHTASLVHDDVIDESDT 95
Query: 91 RRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQLSL 150
RRG ++G + +VL GDFL +QA + ++ E ++ +S V AEGE++Q
Sbjct: 96 RRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLN 155
Query: 151 SKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDD 210
+ D++ EDYL KTA L +A+ + +++++ V + V L YG +LG+AFQ+VDD
Sbjct: 156 QFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDD 215
Query: 211 VLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGKISVE-NLKK 269
+LD+ G ++GK G D G T PV+ A E+ S + + + S + +L++
Sbjct: 216 ILDFTGSTEQLGKPAGSDLMKGNLTAPVLFAL------EEEPKLSELIEREFSQKGDLEQ 269
Query: 270 AFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKSLMEVVDFCLQRL 321
A ++R++ + A Q A SL LP S +++L E+V F L RL
Sbjct: 270 ALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSPPREALKELVHFVLSRL 321
>gnl|CDD|178448 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
Length = 416
Score = 176 bits (447), Expect = 8e-45
Identities = 103/319 (32%), Positives = 178/319 (55%), Gaps = 15/319 (4%)
Query: 11 DMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTL----ATALM--LEYRGDNH 64
D++++N + + ++ ++ + + +GGKR+RP L ATA + L+ H
Sbjct: 104 DLQQLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGLKELTTEH 163
Query: 65 VLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIET 124
LA E IHTA+L+HDDV+D+S +RRGK ++G + +VL GDF+ +Q+ +
Sbjct: 164 RRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANL 223
Query: 125 KSQEALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIA 184
+ E ++ +S V A GE++Q S + DVT ++YL KTA L +A+ + +++ +
Sbjct: 224 DNLEVIKLISQVIKDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFS 283
Query: 185 GVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQR 244
GV +SV++ + YG NLG+AFQ+VDD+LD+ ++GK G D G T PVI A ++
Sbjct: 284 GVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEK 343
Query: 245 GTK-REKNFWKSTINDGKISVEN-LKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLP 302
+ RE I + + E L++A ++ E + + A A +L CLP
Sbjct: 344 EPELRE-------IIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLP 396
Query: 303 DSSWKKSLMEVVDFCLQRL 321
+++ SL ++VD+ L+R+
Sbjct: 397 RGAFRSSLEDMVDYNLERI 415
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component
II. Members of this family are component II of the
heterodimeric heptaprenyl diphosphate synthase. The
trusted cutoff was set such that all members identified
are encoded near to a recognizable gene for component I
(in Pfam family pfam07307). This enzyme acts in
menaquinone-7 isoprenoid side chain biosynthesis.
Length = 319
Score = 166 bits (422), Expect = 8e-42
Identities = 96/314 (30%), Positives = 169/314 (53%), Gaps = 10/314 (3%)
Query: 10 KDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLLAC 69
KD++ + + K + ++ ++ + +L+ +GGKR+RP+ L +Y D +A
Sbjct: 11 KDIDSIEKELEKAVQAEHPVLSEASLHLLEAGGKRIRPVFVLLAGKFGDYDLDAIKHVAV 70
Query: 70 AIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEA 129
A+E IH A+L+HDDV+DD+ LRRG+ + WGN+ ++ GD+L +++ + E K A
Sbjct: 71 ALELIHMASLVHDDVIDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRA 130
Query: 130 LEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNS 189
+ LS + GE+ Q+ N D YL IK KTA+L +A+ ++ ++ +G +
Sbjct: 131 HQILSHTIVEVCRGEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEA 190
Query: 190 VRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGT--- 246
+ + L +G +G+++Q+ DD+LD+ G E+GK G D G TLPV+ A +
Sbjct: 191 IVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMEDPFLKK 250
Query: 247 KREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSW 306
+ E+ ++T + + +E +KK+ I A+ D Y +KA + L LPD
Sbjct: 251 RIEQVLEETTAEEMEPLIEEVKKSDAIEY-AYAVSDR------YLKKALELLDGLPDGRA 303
Query: 307 KKSLMEVVDFCLQR 320
KK L E+ + +R
Sbjct: 304 KKPLQEIAKYIGKR 317
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase.
Length = 422
Score = 129 bits (325), Expect = 1e-30
Identities = 92/283 (32%), Positives = 139/283 (49%), Gaps = 28/283 (9%)
Query: 42 GKRLRP--MLTLATAL------------------MLEYRGDNHVLLACAIEFIHTATLLH 81
GKR RP +L +ATAL L R N +A E IH A+LLH
Sbjct: 124 GKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQN---IAEITEMIHVASLLH 180
Query: 82 DDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEALEALSLVACTLA 141
DDV+DD+ RRG + +V GN+ SVL GDFLLS+A + K+ E + L+ L
Sbjct: 181 DDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHLV 240
Query: 142 EGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALKSYGMNL 201
GE Q++ S+ + + Y+ KTA L S + + +++AG V YG NL
Sbjct: 241 TGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNL 300
Query: 202 GIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKSTINDGK 261
G+AFQL+DDVLD+ G +GK D R+G T P++ A + E + ++ G
Sbjct: 301 GLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAME-----EFPQLREVVDRGF 355
Query: 262 ISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDS 304
+ N+ A + ++R + T A + A ++ LP++
Sbjct: 356 DNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPET 398
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional.
Length = 299
Score = 99.8 bits (249), Expect = 9e-22
Identities = 77/236 (32%), Positives = 111/236 (47%), Gaps = 44/236 (18%)
Query: 41 GGKRLRPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAAR 98
GGKRLRP L AT M + A A+E IH +L+HDD+ +DD LRRG
Sbjct: 43 GGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH 102
Query: 99 LVWGNQTSVLVGDFLLSQAF-----------------CMVIETKSQEAL------EALSL 135
+ +G ++L GD L + AF M+ E S + +AL L
Sbjct: 103 VKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDL 162
Query: 136 VACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNSVRQALK 195
E E +Q+ LD E + H KT L AA+ + +L AG + R+AL
Sbjct: 163 ------EAEGKQV----PLDALERIHRH----KTGALIRAAVRLGALSAGDKG--RRALP 206
Query: 196 S---YGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKR 248
Y ++G+AFQ+ DD+LD G+ +GK G D + GK T P +L ++ K+
Sbjct: 207 VLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKK 262
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 29.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 46 RPMLTLATALMLEYRGDNHVLLACAIEFIHTATLLHDDV 84
RP+L A+M + L CA+E+IH L+H D+
Sbjct: 263 RPLLKQTRAIMKQ--------LLCAVEYIHDKKLIHRDI 293
>gnl|CDD|132064 TIGR03019, pepcterm_femAB, FemAB-related protein, PEP-CTERM
system-associated. Members of this protein family are
found always as part of extended exopolysaccharide
biosynthesis loci in bacteria. In nearly every case,
these loci contain determinants for the processing of
the PEP-CTERM proposed C-terminal protein sorting
signal. This family shows remote, local sequence
similarity to the FemAB protein family (see pfam02388),
whose members.
Length = 330
Score = 28.5 bits (64), Expect = 2.2
Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 39/130 (30%)
Query: 89 ALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMV--IETKSQEALEALSLVACTLAEG--- 143
A R G++ L S L G+FL+S FC+ I S E +AL A LA+
Sbjct: 38 AERDGRIVGVLPLAEIRSRLFGNFLVSLPFCVYGGIAADSAEVAQALEAEAQGLADRLGV 97
Query: 144 ---ELRQLSLS--------------KNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGV 186
ELR L+ K + E I K
Sbjct: 98 GHLELRHLTPRHSGWPAKDLYVTFRKAIPADPEANWLAIPRK-----------------Q 140
Query: 187 QNSVRQALKS 196
+ VR+ +K+
Sbjct: 141 RAMVRKGIKA 150
>gnl|CDD|163278 TIGR03465, HpnD, squalene synthase HpnD. The genes of this family
are often found in the same genetic locus with
squalene-hopene cyclase genes, and are never associated
with genes for the metabolism of phytoene. In the
organisms Zymomonas mobilis and Bradyrhizobium japonicum
these genes have been characterized as squalene
synthases (farnesyl-pyrophosphate ligases). Often, these
genes appear in tandem with the HpnC gene which appears
to have resulted from an ancient gene duplication event.
Presumably these proteins form a heteromeric complex,
but this has not yet been experimentally demonstrated.
Length = 266
Score = 27.6 bits (62), Expect = 4.4
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 179 VSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPV 238
V L A + + Y +LG A QL + + +++GED R G+ LP
Sbjct: 120 VGRLSARIFGATDARTLEYAHHLGRALQLTNIL-----------RDVGEDARRGRIYLPA 168
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase
inhibitor.
Length = 587
Score = 27.2 bits (60), Expect = 5.5
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 148 LSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQ--NSVRQALKSYGMNLGIAF 205
L +L +E D +H+ + T FS AL +SS I+ VQ VR A S
Sbjct: 94 LDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISYVQMPPRVRSAYDS-------CL 146
Query: 206 QLVDDVLD 213
+L+DD +D
Sbjct: 147 ELLDDSVD 154
>gnl|CDD|183865 PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.
Length = 258
Score = 27.0 bits (61), Expect = 6.4
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 19/55 (34%)
Query: 186 VQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVIL 240
+Q + +AL + G+ L F+LV + R PT+P++L
Sbjct: 59 IQAASLRALAA-GVTLADVFELV------------------REIREKDPTIPIVL 94
>gnl|CDD|173189 PRK14726, PRK14726, bifunctional preprotein translocase subunit
SecD/SecF; Provisional.
Length = 855
Score = 26.6 bits (59), Expect = 8.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 22/67 (32%)
Query: 172 LFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAF-----------QLVDDVLDYRGEVNE 220
SAAL ++SL+ + G+NLGI F Q D+ D R +NE
Sbjct: 558 TLSAALSLASLVL---------FATVGLNLGIDFTGGSLIEVRAKQGNADIADIRARLNE 608
Query: 221 MGKNIGE 227
+ N+GE
Sbjct: 609 L--NLGE 613
>gnl|CDD|132151 TIGR03107, glu_aminopep, glutamyl aminopeptidase. This model
represents the M42.001 clade within MEROPS family M42.
M42 includes glutamyl aminopeptidase as in the present
model, deblocking aminopeptidases as from Pyrococcus
horikoshii and related species, and
endo-1,4-beta-glucanase (cellulase M) as from
Clostridium thermocellum. The current family includes.
Length = 350
Score = 26.7 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 95 VAARLVWGNQTSVLVGDFLLSQAFCMVIETK 125
V AR + +QT + DFL +QAF I K
Sbjct: 310 VCARYIHSHQTLYSIDDFLAAQAFLQAIVKK 340
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.384
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,143,506
Number of extensions: 328948
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 21
Length of query: 322
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 228
Effective length of database: 3,963,321
Effective search space: 903637188
Effective search space used: 903637188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)