RPSBLAST alignment of GI: 254780755 and protein with PDBid: 1rtr
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301
Score = 122 bits (307), Expect = 9e-29
Identities = 73/288 (25%), Positives = 140/288 (48%), Gaps = 20/288 (6%)
Query: 10 KDMEKVNFLILKRICSDV--EMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLL 67
K +++VN + I V + + + Y + +GGKR+RP+L L T L + +
Sbjct: 8 KLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKS 67
Query: 68 ACAIEFIHTATLLHDDVVDDSALRRGKV--AARLVWGNQTSVLVGDFLLSQAFCMVIETK 125
A A+E IHT +L+HDD+ + V+G T++L GD LL++AF ++
Sbjct: 68 AIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD 127
Query: 126 SQ------EALEALSLVACT--LAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAAL 177
+ L+ LS+ + + G++ + S+ + E + K+KT L + A+
Sbjct: 128 RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHKTKTGALLTFAV 186
Query: 178 EVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLP 237
++ IA V ++ ++ L+SY +LG+ FQ+ DD+LD G+ ++GK +G D N K T
Sbjct: 187 MSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYV 246
Query: 238 VILAFQRGTKREKNFWKSTIN-----DGKISVENLKKA--FIIMRENR 278
+L + + ++ D + + ++L + R+++
Sbjct: 247 SLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDHK 294