RPSBLAST alignment of GI: 254780755 and protein with PDBid: 1rtr

>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301
 Score =  122 bits (307), Expect = 9e-29
 Identities = 73/288 (25%), Positives = 140/288 (48%), Gaps = 20/288 (6%)

Query: 10  KDMEKVNFLILKRICSDV--EMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLL 67
           K +++VN  +   I   V    + + + Y + +GGKR+RP+L L T   L    +  +  
Sbjct: 8   KLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKS 67

Query: 68  ACAIEFIHTATLLHDDVVDDSALRRGKV--AARLVWGNQTSVLVGDFLLSQAFCMVIETK 125
           A A+E IHT +L+HDD+         +       V+G  T++L GD LL++AF ++    
Sbjct: 68  AIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD 127

Query: 126 SQ------EALEALSLVACT--LAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAAL 177
                   + L+ LS+ +    +  G++  +  S+   +  E    + K+KT  L + A+
Sbjct: 128 RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHKTKTGALLTFAV 186

Query: 178 EVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLP 237
             ++ IA V ++ ++ L+SY  +LG+ FQ+ DD+LD  G+  ++GK +G D  N K T  
Sbjct: 187 MSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYV 246

Query: 238 VILAFQRGTKREKNFWKSTIN-----DGKISVENLKKA--FIIMRENR 278
            +L       +      + ++     D + + ++L +       R+++
Sbjct: 247 SLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDHK 294