RPSBLAST alignment of GI: 254780755 and protein with PDBid: 2j1p
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A Length = 293
Score = 118 bits (297), Expect = 1e-27
Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 35/290 (12%)
Query: 9 LKDMEKVNFLILKRICSDV-EMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVLL 67
++ + VN + + I + ++Y + +GGKR+RP+L +A ++ +
Sbjct: 18 IRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPA 77
Query: 68 ACAIEFIHTATLLHDDVV--DDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETK 125
ACA+E IHT +L+HDD+ D+ LRRGK V+G +VL GD LLS AF +
Sbjct: 78 ACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASAT 137
Query: 126 S-----QEALEALSLVACTLAEGELRQLSL-------SKNLDVTEEDYLHVIKSKTAVLF 173
S + A+ +A + L + +V E + KTA L
Sbjct: 138 SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALL 197
Query: 174 SAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGK 233
A+ + +I G + + L+ + +G+ FQ+VDD+LD K
Sbjct: 198 EASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS--------------SK 243
Query: 234 PTLPVILAFQRGTKREKNFWKSTIND----GKISVENLKKA--FIIMREN 277
T P ++ ++ + + + V L +I R+N
Sbjct: 244 LTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293