RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3lk5

>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum} Length = 380

 Score =  211 bits (539), Expect = 1e-55
 Identities = 83/343 (24%), Positives = 133/343 (38%), Gaps = 31/343 (9%)

Query: 9   LKDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRG------D 62
           L        L +  I + V      ++  + +GGKR+RP+   A  L  +         +
Sbjct: 29  LTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLE 88

Query: 63  NHVLLACAIEFIHTATLLHDDVVDDSALRRGKVAARLV----------------WGNQTS 106
           + +  A ++EFI    L+HDD++D S  RRG                       +G   S
Sbjct: 89  SVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVS 148

Query: 107 VLVGDFLLSQAFCMVIETKSQEALEALSLVACTLAEGELRQ-----LSLSKNLDVTEEDY 161
           +L GD  L  A  M+ ++       A +  A      E+       + L  + + + E  
Sbjct: 149 ILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELA 208

Query: 162 LHVIKSKTAVLFSAA-LEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNE 220
             V + KTA    A  L + + IAG    +  AL  YG ++GIAFQL DD+L   G+   
Sbjct: 209 DSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAI 268

Query: 221 MGKNIGEDFRNGKPTLPVILAFQRGTKREKNFWKS--TINDGKISVENLKKAFIIMRENR 278
            GK  G+D R GK T+ + LA QR  K+      +         S E++      +R   
Sbjct: 269 TGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATG 328

Query: 279 ALVDTEYRAYSYGQKAKDSLRCLP-DSSWKKSLMEVVDFCLQR 320
           A  + E R     +     L  +      +  L  +     +R
Sbjct: 329 AEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTER 371