RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3llw
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} Length = 311
Score = 191 bits (487), Expect = 1e-49
Identities = 71/297 (23%), Positives = 140/297 (47%), Gaps = 25/297 (8%)
Query: 10 KDMEKVN-FL--ILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALML------EYR 60
+ E+ FL + S + ++ +GGKR RP L LA L +
Sbjct: 13 NECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQ 72
Query: 61 GDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAF 118
+ +A +IE +HT +L+HDD+ +D++ALRR + T+VL+GD L + +F
Sbjct: 73 QTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSF 132
Query: 119 CMVIETKSQEALEALSLVACTLAEG------ELRQLSLSKNLDVTEEDYLHVIKSKTAVL 172
++ + + + + G +N + E + + KTA L
Sbjct: 133 ELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKL 192
Query: 173 FSAALEVSSLIAGVQNS-VRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231
SA+L + + +G+++ + + L+++G+ +G+ FQ++DD++D + E GK D +
Sbjct: 193 ISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--S 250
Query: 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMREN-RALVDTEYRA 287
K + +L +R + +ND ++ LK A+ +++EN AL++T ++
Sbjct: 251 AKNSFVNLLGLERANNYAQTLKTEVLND----LDALKPAYPLLQENLNALLNTLFKG 303