RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3lmd

>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} Length = 360

 Score =  280 bits (717), Expect = 3e-76
 Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 4/313 (1%)

Query: 11  DMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEY-RGDNHVLLAC 69
            M +V  L+   + S  + + D+V +L  +GGKR RPM  L  +   E    +N +  A 
Sbjct: 43  AMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAV 102

Query: 70  AIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAFCMVIETKSQEA 129
            +E  H ATL HDDV+D++++RRG  +A   W N  ++L GD LL+ A  ++ +  + + 
Sbjct: 103 VVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT-DT 161

Query: 130 LEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQNS 189
           +   +     L  G++R+    ++ D   E Y +VI+ KT VL ++A  + ++ AG    
Sbjct: 162 VAHFAETFGELVTGQMRETVGPRDTD-PIEHYTNVIREKTGVLIASAGYLGAMHAGAAPE 220

Query: 190 VRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTKRE 249
              ALK++G  +G+ FQ+VDD++D   E +E GK  G D R G  TLPV+ A +  T   
Sbjct: 221 HIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVG 280

Query: 250 KNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWKKS 309
               +  +       E +     ++ ++          Y Y   A   L  LPDS+ K++
Sbjct: 281 AE-LRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEA 339

Query: 310 LMEVVDFCLQRLN 322
           L  +  F ++R+ 
Sbjct: 340 LRNLATFTVKRVG 352