RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3n3d
>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis} Length = 335
Score = 257 bits (658), Expect = 2e-69
Identities = 84/313 (26%), Positives = 154/313 (49%), Gaps = 5/313 (1%)
Query: 10 KDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVL-LA 68
+ + +L+ + D + I + L+ SGGK LRP + + A
Sbjct: 16 PQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGA 75
Query: 69 CAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAF-CMVIETKSQ 127
AIE +H TL+HDDV+DDS RRG ++ +G + ++ GDF+ + F ++ T +
Sbjct: 76 AAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDR 135
Query: 128 EALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQ 187
++ + +GEL Q+ L+ D+T + YL+ I KTA LF+ + + +AG
Sbjct: 136 SLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAP 195
Query: 188 NSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTK 247
SV + G+ +G A+Q++DD+LDY G+ K + ED R+G +LP++L+ +
Sbjct: 196 QSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPR 255
Query: 248 REKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWK 307
K +++E++K ++ + + + A Y +A ++ LP S +
Sbjct: 256 DFHKLLKK---KQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQ 312
Query: 308 KSLMEVVDFCLQR 320
+SL ++ L+R
Sbjct: 313 QSLEQLTRLLLRR 325