RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3n3d

>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis} Length = 335
 Score =  257 bits (658), Expect = 2e-69
 Identities = 84/313 (26%), Positives = 154/313 (49%), Gaps = 5/313 (1%)

Query: 10  KDMEKVNFLILKRICSDVEMIPDVVKYLIFSGGKRLRPMLTLATALMLEYRGDNHVL-LA 68
             +  +   +L+ +  D + I   +  L+ SGGK LRP      +          +   A
Sbjct: 16  PQLTALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGA 75

Query: 69  CAIEFIHTATLLHDDVVDDSALRRGKVAARLVWGNQTSVLVGDFLLSQAF-CMVIETKSQ 127
            AIE +H  TL+HDDV+DDS  RRG    ++ +G + ++  GDF+ +  F  ++  T  +
Sbjct: 76  AAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDR 135

Query: 128 EALEALSLVACTLAEGELRQLSLSKNLDVTEEDYLHVIKSKTAVLFSAALEVSSLIAGVQ 187
             ++        + +GEL Q+ L+   D+T + YL+ I  KTA LF+ +    + +AG  
Sbjct: 136 SLIQNHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAP 195

Query: 188 NSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRNGKPTLPVILAFQRGTK 247
            SV    +  G+ +G A+Q++DD+LDY G+     K + ED R+G  +LP++L+     +
Sbjct: 196 QSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPR 255

Query: 248 REKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYGQKAKDSLRCLPDSSWK 307
                 K       +++E++K    ++ +   +   +  A  Y  +A   ++ LP  S +
Sbjct: 256 DFHKLLKK---KQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQ 312

Query: 308 KSLMEVVDFCLQR 320
           +SL ++    L+R
Sbjct: 313 QSLEQLTRLLLRR 325