RPSBLAST alignment of GI: 254780755 and protein with PDBid: 3pde
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309
Score = 183 bits (464), Expect = 7e-47
Identities = 77/332 (23%), Positives = 134/332 (40%), Gaps = 51/332 (15%)
Query: 4 LEDLTLKDMEKVNFLILKRICSDVE--MIPDVVKYLIFSGGKRLRPMLTLATALML--EY 59
L + + +N + + I +D + + + Y + +GGKRLRP+LT+AT L +
Sbjct: 8 LIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTF 67
Query: 60 RGDNHVLLACAIEFIHTATLLHDDV--VDDSALRRGKVAARLVWGNQTSVLVGDFLLSQA 117
+ H A+E +HT +L+HDD+ +D+ ALRRG+ + +G + L GD LL+ A
Sbjct: 68 VPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLA 127
Query: 118 FCMVIETKSQEALEALSLVACTLAEGELRQL------SLSKNLDVTEEDYLHVIKSKTAV 171
F + T ++A + A A G + S+++++ + K KT
Sbjct: 128 FQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGA 187
Query: 172 LFSAALEVSSLIAGVQNSVRQALKSYGMNLGIAFQLVDDVLDYRGEVNEMGKNIGEDFRN 231
L A++ ++ + A + G+AFQ+ DD+LD EMGK +D
Sbjct: 188 LLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADE 247
Query: 232 GKPTLPVILAFQRGTKREKNFWKSTINDGKISVENLKKAFIIMRENRALVDTEYRAYSYG 291
K T P L + +
Sbjct: 248 AKNTYPGKLGLIGANQALID--------------------------------------TI 269
Query: 292 QKAKDSLRCLPDSSWKKSLMEVVD-FCLQRLN 322
+ +L+ LP S+ + L F +R+N
Sbjct: 270 HSGQAALQGLPTSTQRDDLAAFFSYFDTERVN 301