HHsearch alignment for GI: 254780757 and conserved domain: COG0013
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=96.96 E-value=0.0031 Score=44.61 Aligned_cols=176 Identities=22% Similarity=0.234 Sum_probs=116.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCC---------C--CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 777799999999999986695896116754---------3--33224857898744834401676415578876554667
Q gi|254780757|r 9 NDLSFQNIILTLTQYWAQQGCTILQPYDME---------V--GAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAEN 77 (307)
Q Consensus 9 ~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~--GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeN 77 (307)
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~-f~g~v~p~~~r~~~sQkcIR~NDi---eN 79 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPY-FTGGVTPPANRAVTSQKCIRTNDI---DN 79 (879)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCCCHHH-HCCCCCCCCCCEECCCCCCCCCCH---HH
T ss_conf 65779999999999998779734578886789999768960463014113-217888999970010212014766---54
Q ss_pred CCCCC-EEEEEEEEECCCCHH--------------------------------HHHHHHHHHHHCCCCCCCCCEEE-EEC
Q ss_conf 75001-144445575798335--------------------------------89999999998199962171798-832
Q gi|254780757|r 78 PNRLQ-HYYQFQVIIKPNPLN--------------------------------LQNLYIESLKAVGIDPLIHDVRF-VED 123 (307)
Q Consensus 78 PNRlq-~y~QfQVilKPsp~n--------------------------------iq~lYl~SL~~iGid~~~hDIrF-veD 123 (307)
T Consensus 80 VG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip-~~rIir~~~~d 158 (879)
T COG0013 80 VGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIP-PERIIRIGASD 158 (879)
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHCCCC-HHHEEECCCCC
T ss_conf 37665410677765057066778899999999998745089878979999458667888887632998-89845357678
Q ss_pred CCCCCHHHHCCCCEEEEECC-------------------EEEHH--HHHHHHH-CCC---CCCCCHHHHHHHHHHHHHHH
Q ss_conf 88870011012321768878-------------------74147--7789986-682---57751456787899999998
Q gi|254780757|r 124 NWESPTLGAWGLGWECWCDG-------------------MEISQ--FTYFQQV-CGI---ECSPISGEITYGLERLAMYV 178 (307)
Q Consensus 124 nWEsPtLGAwGlGWEvwldG-------------------MEItQ--FTYFQQv-GGi---~c~pv~~EiTYGLERiaMyl 178 (307)
T Consensus 159 NfW~~G~GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vl 238 (879)
T COG0013 159 NFWEMGDGPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVL 238 (879)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 87778886888855899767766688877886777882689756430110137999875518887715686699999998
Q ss_pred CCCCCEEEEEE
Q ss_conf 69982113320
Q gi|254780757|r 179 QNVNSVYDIVF 189 (307)
Q Consensus 179 Q~vdnvyDl~w 189 (307)
T Consensus 239 Q~~~tnyd~dl 249 (879)
T COG0013 239 QGVPTNYDTDL 249 (879)
T ss_pred CCCCCCHHHHH
T ss_conf 49996214440