HHsearch alignment for GI: 254780757 and conserved domain: COG0013

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=96.96  E-value=0.0031  Score=44.61  Aligned_cols=176  Identities=22%  Similarity=0.234  Sum_probs=116.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEECCCCC---------C--CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             777799999999999986695896116754---------3--33224857898744834401676415578876554667
Q gi|254780757|r    9 NDLSFQNIILTLTQYWAQQGCTILQPYDME---------V--GAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAEN   77 (307)
Q Consensus         9 ~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~--GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeN   77 (307)
T Consensus         4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~-f~g~v~p~~~r~~~sQkcIR~NDi---eN   79 (879)
T COG0013           4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPY-FTGGVTPPANRAVTSQKCIRTNDI---DN   79 (879)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCCCHHH-HCCCCCCCCCCEECCCCCCCCCCH---HH
T ss_conf             65779999999999998779734578886789999768960463014113-217888999970010212014766---54


Q ss_pred             CCCCC-EEEEEEEEECCCCHH--------------------------------HHHHHHHHHHHCCCCCCCCCEEE-EEC
Q ss_conf             75001-144445575798335--------------------------------89999999998199962171798-832
Q gi|254780757|r   78 PNRLQ-HYYQFQVIIKPNPLN--------------------------------LQNLYIESLKAVGIDPLIHDVRF-VED  123 (307)
Q Consensus        78 PNRlq-~y~QfQVilKPsp~n--------------------------------iq~lYl~SL~~iGid~~~hDIrF-veD  123 (307)
T Consensus        80 VG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip-~~rIir~~~~d  158 (879)
T COG0013          80 VGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIP-PERIIRIGASD  158 (879)
T ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHCCCC-HHHEEECCCCC
T ss_conf             37665410677765057066778899999999998745089878979999458667888887632998-89845357678


Q ss_pred             CCCCCHHHHCCCCEEEEECC-------------------EEEHH--HHHHHHH-CCC---CCCCCHHHHHHHHHHHHHHH
Q ss_conf             88870011012321768878-------------------74147--7789986-682---57751456787899999998
Q gi|254780757|r  124 NWESPTLGAWGLGWECWCDG-------------------MEISQ--FTYFQQV-CGI---ECSPISGEITYGLERLAMYV  178 (307)
Q Consensus       124 nWEsPtLGAwGlGWEvwldG-------------------MEItQ--FTYFQQv-GGi---~c~pv~~EiTYGLERiaMyl  178 (307)
T Consensus       159 NfW~~G~GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vl  238 (879)
T COG0013         159 NFWEMGDGPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVL  238 (879)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             87778886888855899767766688877886777882689756430110137999875518887715686699999998


Q ss_pred             CCCCCEEEEEE
Q ss_conf             69982113320
Q gi|254780757|r  179 QNVNSVYDIVF  189 (307)
Q Consensus       179 Q~vdnvyDl~w  189 (307)
T Consensus       239 Q~~~tnyd~dl  249 (879)
T COG0013         239 QGVPTNYDTDL  249 (879)
T ss_pred             CCCCCCHHHHH
T ss_conf             49996214440