>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.

Probab=100.00 E-value=0 Score=1205.59 Aligned_cols=279 Identities=68% Similarity=1.189 Sum_probs=277.0 Q ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE Q ss_conf 79999999999998669589611675433322485789874483440167641557887655466775001144445575 Q gi|254780757|r 12 SFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVII 91 (307) Q Consensus 12 ~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVil 91 (307) T Consensus 1 tfq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYG~NPNRlq~y~QfQVil 80 (279) T cd00733 1 TFQDLILKLQKFWASQGCLIIQPYDMEVGAGTFHPATFLRALGPEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQVII 80 (279) T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHCEEEEEEEEE T ss_conf 97899999999998779688767654246465888998863199863155424677999987778932310003457998 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 79833589999999998199962171798832888700110123217688787414777899866825775145678789 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGL 171 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGL 171 (307) T Consensus 81 KPsp~n~q~lYL~SL~~igid~~~hDIrFveDnWEsPtLGAwGlGWEVwldGMEItQFTYFQQvGGi~c~pv~~EiTYGL 160 (279) T cd00733 81 KPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIPCKPISVEITYGL 160 (279) T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCEEEEEEEEEEEECCEECCCCCEEEEHHH T ss_conf 78956589999998998497954362478614787875310234349998775776435121137821445323310119 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 99999986998211332068887883110624474699777635017989999999999999999985006653233553 Q gi|254780757|r 172 ERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHL 251 (307) Q Consensus 172 ERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP~~~~~~~~ 251 (307) T Consensus 161 ERiaMylQ~vd~v~dl~wn----~~vtYgdvf~q~E~e~S~YNFE~ad~~~L~~~F~~~E~Ea~~Ll~~~L~-------- 228 (279) T cd00733 161 ERIAMYLQGVDNVYDIEWN----KKITYGDVFLQNEIEQSVYNFEYANVDMLFQLFEDYEKEAKRLLELGLP-------- 228 (279) T ss_pred HHHHHHHHCCCHHEEEECC----CCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC-------- T ss_conf 9999998575423141237----8861012232779999986056469999999999999999999975999-------- Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01382899999999987888387501788999999999999999999985451 Q gi|254780757|r 252 CVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPN 304 (307) Q Consensus 252 lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re 304 (307) T Consensus 229 --lPAYD~~LKaSH~FNLLDARGaISVtER~~YI~RIR~Lak~~a~~y~~~re 279 (279) T cd00733 229 --LPAYDYVLKCSHTFNLLDARGAISVTERQRYILRIRNLAREIAKLYVEQRE 279 (279) T ss_pred --CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf --367999999988888773358865899999999999999999999998419

HHsearch alignment for GI: 254780757 and conserved domain: cd00733