HHsearch alignment of GI: 254780757 and MMDB domain: 1j5w_A_1-199
>1j5w_A (A:1-199) Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=856.45 Aligned_cols=195 Identities=62% Similarity=1.127 Sum_probs=191.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 64335677779999999999998669589611675433322485789874483440167641557887655466775001
Q gi|254780757|r 3 PIHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQ 82 (307)
Q Consensus 3 ~~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq 82 (307)
.+..++++++||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+||||||||||||
T Consensus 5 ~~~~~~~~~~fq~~I~~Lq~fW~~~GC~i~qpyd~evGAGT~hpaTflralgpepw~~aYVqPsrRP~DgRYGeNPNRLq 84 (199)
T 1j5w_A 5 KIHHHHHHXYLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQ 84 (199)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHC
T ss_conf 23321021329999999999997779688777654336465888999864198763255424677999887678930320
Q ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCC
Q ss_conf 14444557579833589999999998199962171798832888700110123217688787414777899866825775
Q gi|254780757|r 83 HYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSP 162 (307)
Q Consensus 83 ~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~p 162 (307)
|||||||||||||+|||+|||+||++||||+++|||||||||||||||||||||||||||||||||||||||||||+|+|
T Consensus 85 ~yyQfQViiKPsP~niq~lYL~SL~~lGid~~~hDIRFvEDnWEsPtLGAwGlGWEvwldGMEitQfTYFQqvGgi~~~p 164 (199)
T 1j5w_A 85 RYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKD 164 (199)
T ss_dssp EEEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSS
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCC
T ss_conf 01245789778947689999999998099910214478622777877011120059998876875344031027743344
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 145678789999999869982113320688878831106
Q gi|254780757|r 163 ISGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGD 201 (307)
Q Consensus 163 v~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGd 201 (307)
|++||||||||||||||+|||||||.|| +++||||
T Consensus 165 v~~EiTYGLERiamylQ~vd~v~dl~w~----~~~tYgd 199 (199)
T 1j5w_A 165 IPLEITYGLERIAXYLQGVDNVYEVQWN----ENVKYGD 199 (199)
T ss_dssp CCEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHH
T ss_conf 2200001499999998387246222167----9974669