Query gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 307
No_of_seqs 141 out of 623
Neff 3.4
Searched_HMMs 33803
Date Wed Jun 1 14:03:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780757.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1j5w_A Glycyl-tRNA synthetase 100.0 0 0 856.5 10.7 195 3-201 5-199 (199)
2 >1j5w_A Glycyl-tRNA synthetase 100.0 3.2E-41 1.4E-45 319.3 11.8 96 202-307 1-97 (99)
3 >2ztg_A Alanyl-tRNA synthetase 98.0 5.4E-06 1.6E-10 64.1 4.1 170 7-184 56-260 (260)
4 >2zze_A Alanyl-tRNA synthetase 98.0 3.7E-05 1.1E-09 58.1 7.8 172 6-184 52-266 (266)
5 >1c0a_A Aspartyl tRNA syntheta 97.3 0.0038 1.1E-07 43.5 9.6 175 11-189 11-275 (279)
6 >1yfs_A Alanyl-tRNA synthetase 96.9 0.0025 7.4E-08 44.8 6.2 173 10-185 2-237 (237)
7 >3hy0_A Alanyl-tRNA synthetase 96.7 0.0042 1.2E-07 43.2 5.8 170 10-183 1-252 (252)
8 >1l0w_A Aspartyl-tRNA syntheta 95.7 0.22 6.5E-06 30.7 14.5 170 14-188 14-276 (276)
9 >1nnh_A Asparaginyl-tRNA synth 85.8 0.16 4.8E-06 31.7 -0.2 177 13-190 18-284 (294)
10 >3e9h_A Lysyl-tRNA synthetase; 85.7 0.32 9.5E-06 29.6 1.3 172 14-190 33-342 (348)
11 >3dsq_A Pyrrolysyl-tRNA synthe 84.9 3.3 9.6E-05 22.3 6.5 160 13-184 5-202 (203)
12 >3i7f_A Aspartyl-tRNA syntheta 84.7 0.88 2.6E-05 26.4 3.2 175 13-190 13-305 (314)
13 >3ib6_A Uncharacterized protei 83.4 2.1 6.3E-05 23.6 4.7 73 48-142 69-142 (189)
14 >2om6_A Probable phosphoserine 80.5 3.5 0.0001 22.0 4.9 46 91-142 72-118 (150)
15 >2pke_A Haloacid delahogenase- 77.2 5.5 0.00016 20.6 5.1 56 81-142 62-119 (163)
16 >1b8a_A Protein (aspartyl-tRNA 76.6 1.7 4.9E-05 24.4 2.3 176 14-190 14-302 (311)
17 >3bju_A Lysyl-tRNA synthetase; 75.7 1.9 5.8E-05 23.9 2.5 67 14-80 24-111 (365)
18 >1n9w_A Aspartyl-tRNA syntheta 75.0 3 9E-05 22.5 3.3 173 14-190 25-309 (318)
19 >1wyd_A Hypothetical aspartyl- 71.2 3.2 9.3E-05 22.4 2.6 174 14-190 14-296 (305)
20 >2hx1_A Predicted sugar phosph 63.3 8.4 0.00025 19.3 3.5 118 23-143 10-132 (162)
21 >3g1z_A Putative lysyl-tRNA sy 60.5 1.3 3.9E-05 25.1 -1.0 173 13-189 20-320 (326)
22 >1eov_A ASPRS, aspartyl-tRNA s 57.1 2 6.1E-05 23.7 -0.5 174 14-190 14-310 (319)
23 >1yv9_A Hydrolase, haloacid de 54.3 8.6 0.00025 19.2 2.3 89 48-142 28-118 (154)
24 >1pgs_A Peptide-N(4)-(N-acetyl 51.2 3.1 9.2E-05 22.4 -0.4 22 126-147 100-121 (177)
25 >2odr_C Phosphoseryl-tRNA synt 49.1 19 0.00056 16.7 6.8 129 53-186 167-303 (305)
26 >1e1o_A Lysyl-tRNA synthetase; 45.3 3.2 9.6E-05 22.3 -1.0 173 14-190 29-339 (346)
27 >1x54_A Asparaginyl-tRNA synth 45.2 4 0.00012 21.6 -0.6 174 13-190 13-300 (309)
28 >2hoq_A Putative HAD-hydrolase 42.2 24 0.0007 16.0 4.8 51 91-147 66-117 (158)
29 >2fyf_A PSAT, phosphoserine am 40.4 12 0.00036 18.1 1.3 18 65-82 35-52 (219)
30 >1wle_A Seryl-tRNA synthetase; 40.2 25 0.00075 15.8 4.8 118 51-178 175-326 (380)
31 >2odr_A Phosphoseryl-tRNA synt 39.1 26 0.00078 15.7 7.8 131 51-187 165-304 (309)
32 >2odr_D Phosphoseryl-tRNA synt 39.1 26 0.00078 15.7 7.8 131 51-187 165-304 (309)
33 >2du3_A O-phosphoseryl-tRNA sy 39.0 26 0.00078 15.7 4.8 137 47-189 36-189 (189)
34 >2ve7_C Kinetochore protein NU 38.8 20 0.00058 16.6 2.1 45 91-135 42-88 (141)
35 >2dch_X Putative homing endonu 36.4 29 0.00086 15.4 3.2 50 82-146 13-62 (90)
36 >3ig5_A Glutamate-cysteine lig 36.0 21 0.00062 16.4 1.9 47 109-156 288-339 (546)
37 >3kc2_A Uncharacterized protei 35.1 17 0.00051 17.0 1.4 46 90-141 112-157 (193)
38 >3epr_A Hydrolase, haloacid de 34.8 25 0.00075 15.8 2.2 89 47-142 27-117 (154)
39 >2ns0_A Hypothetical protein; 33.6 20 0.00059 16.6 1.5 30 38-68 18-48 (85)
40 >1qtq_A GLNRS, protein (glutam 33.2 19 0.00056 16.7 1.4 17 226-242 1-17 (111)
41 >2qsd_A Uncharacterized conser 31.6 21 0.00061 16.4 1.3 15 109-123 20-34 (84)
42 >3ed5_A YFNB; APC60080, bacill 31.3 35 0.001 14.8 3.7 46 92-143 71-118 (151)
43 >2q9r_A Protein of unknown fun 30.1 36 0.0011 14.7 6.2 61 238-305 77-137 (200)
44 >1ses_A Seryl-tRNA synthetase; 30.0 4.2 0.00012 21.5 -2.5 125 52-178 133-284 (314)
45 >2du7_A O-phosphoseryl-tRNA sy 29.7 37 0.0011 14.6 8.6 128 54-188 94-231 (240)
46 >1yj5_A 5' polynucleotide kina 29.3 27 0.00079 15.6 1.6 60 80-142 102-168 (204)
47 >2dq0_A Seryl-tRNA synthetase; 28.3 39 0.0011 14.5 5.1 64 52-115 154-227 (342)
48 >2zg6_A Putative uncharacteriz 28.2 37 0.0011 14.6 2.1 44 90-142 62-106 (134)
49 >1vjr_A 4-nitrophenylphosphata 26.7 41 0.0012 14.3 3.4 49 94-142 58-114 (145)
50 >2hz7_A Glutaminyl-tRNA synthe 26.5 29 0.00086 15.4 1.4 17 226-242 1-17 (110)
51 >2odr_B Phosphoseryl-tRNA synt 26.1 42 0.0012 14.2 7.5 149 31-186 191-356 (362)
52 >2oyc_A PLP phosphatase, pyrid 24.6 45 0.0013 14.0 5.0 51 93-143 61-121 (166)
53 >1zkd_A DUF185; X-RAY, NESG, R 24.2 34 0.001 14.9 1.3 54 12-67 33-94 (300)
54 >3f7c_A Protein of unknown fun 24.2 46 0.0013 14.0 2.9 35 238-272 61-95 (97)
55 >2io8_A Bifunctional glutathio 23.8 46 0.0014 13.9 2.0 34 52-85 41-77 (77)
56 >1zjj_A Hypothetical protein P 21.1 52 0.0015 13.6 4.9 48 95-142 43-98 (131)
57 >2c6n_A Angiotensin-converting 21.0 30 0.0009 15.2 0.6 31 47-77 35-67 (150)
58 >2kd2_A FAS apoptotic inhibito 20.7 41 0.0012 14.3 1.2 10 137-146 33-42 (43)
59 >1b7y_A Phers, protein (phenyl 20.5 54 0.0016 13.5 10.3 174 13-187 103-335 (350)
60 >1bcp_B Pertussis toxin; ADP-r 20.4 35 0.001 14.8 0.8 57 62-136 85-142 (154)
61 >3ddh_A Putative haloacid deha 20.3 54 0.0016 13.4 4.2 89 48-143 27-118 (149)
62 >1vky_A S-adenosylmethionine:t 20.0 52 0.0015 13.6 1.6 26 23-49 101-126 (250)
No 1
>>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:1-199)
Probab=100.00 E-value=0 Score=856.45 Aligned_cols=195 Identities=62% Similarity=1.127 Sum_probs=191.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 64335677779999999999998669589611675433322485789874483440167641557887655466775001
Q gi|254780757|r 3 PIHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQ 82 (307)
Q Consensus 3 ~~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq 82 (307)
.+..++++++||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+||||||||||||
T Consensus 5 ~~~~~~~~~~fq~~I~~Lq~fW~~~GC~i~qpyd~evGAGT~hpaTflralgpepw~~aYVqPsrRP~DgRYGeNPNRLq 84 (199)
T 1j5w_A 5 KIHHHHHHXYLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQ 84 (199)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHC
T ss_conf 23321021329999999999997779688777654336465888999864198763255424677999887678930320
Q ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCC
Q ss_conf 14444557579833589999999998199962171798832888700110123217688787414777899866825775
Q gi|254780757|r 83 HYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSP 162 (307)
Q Consensus 83 ~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~p 162 (307)
|||||||||||||+|||+|||+||++||||+++|||||||||||||||||||||||||||||||||||||||||||+|+|
T Consensus 85 ~yyQfQViiKPsP~niq~lYL~SL~~lGid~~~hDIRFvEDnWEsPtLGAwGlGWEvwldGMEitQfTYFQqvGgi~~~p 164 (199)
T 1j5w_A 85 RYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKD 164 (199)
T ss_dssp EEEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSS
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCC
T ss_conf 01245789778947689999999998099910214478622777877011120059998876875344031027743344
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf 145678789999999869982113320688878831106
Q gi|254780757|r 163 ISGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGD 201 (307)
Q Consensus 163 v~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGd 201 (307)
|++||||||||||||||+|||||||.|| +++||||
T Consensus 165 v~~EiTYGLERiamylQ~vd~v~dl~w~----~~~tYgd 199 (199)
T 1j5w_A 165 IPLEITYGLERIAXYLQGVDNVYEVQWN----ENVKYGD 199 (199)
T ss_dssp CCEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHH
T ss_conf 2200001499999998387246222167----9974669
No 2
>>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:200-298)
Probab=100.00 E-value=3.2e-41 Score=319.27 Aligned_cols=96 Identities=44% Similarity=0.721 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 24474699777635017989999999999999999985006653233553013828999999999878883875017889
Q gi|254780757|r 202 IFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTER 281 (307)
Q Consensus 202 if~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTER 281 (307)
||+|+|+|||+||||+||+++|+++|++||+||++||+++|| +||||+||||||+|||||||||||||||
T Consensus 1 vf~q~E~e~S~ynFE~ad~~~L~~~F~~~E~Ea~rli~~~L~----------lPAYD~~lK~SH~FNLLDARGaISVtER 70 (99)
T 1j5w_A 1 VFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY----------LPAYDYILKCSHTFNLLDARGAISVSQR 70 (99)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 876538999886256449999999999999999999866999----------6669999999888888763578758999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf 999999999999999999854516-89
Q gi|254780757|r 282 QRYILRIRSLAKACGEAFLMTPNG-GH 307 (307)
Q Consensus 282 q~YI~RIR~Lak~~A~ayl~~re~-g~ 307 (307)
|+||+|||+|||+||++|+++|+. ||
T Consensus 71 ~~yI~riR~Lak~~A~~y~~~re~lg~ 97 (99)
T 1j5w_A 71 QTYVKRIQAXARKAARVFLEVQANENS 97 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999998874699
No 3
>>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:1-260)
Probab=98.01 E-value=5.4e-06 Score=64.13 Aligned_cols=170 Identities=19% Similarity=0.272 Sum_probs=126.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCC--CCCHHHHHHHCCCCCCE-EEEECCCCCCCCCCC
Q ss_conf 56777799999999999986695896116754---------3332--24857898744834401-676415578876554
Q gi|254780757|r 7 KKNDLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAG--TFHPSTTLRALGPLSWK-AAYVQPSRRPLDGRY 74 (307)
Q Consensus 7 ~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAg--T~hp~T~lr~lg~~pw~-~aYvqPsrRP~DgRY 74 (307)
...+|+-++|..+-.+|..++|+.++.+|.+- +.|| .|-|. |+...-|.|++ ++-+|||.|-.|=.
T Consensus 56 ~~~~~~~~eiR~~Fl~FF~~~gH~~i~s~pvvpr~d~~llft~Agm~~Fkp~-~~~g~~~pp~~~l~~sQ~CiR~nDld- 133 (260)
T 2ztg_A 56 FKKPFELDEXREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPF-VTSGVAPPPANPLTISQPCIRLDDLD- 133 (260)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTT-TTTSSSCCSSSSEEEEEEEECGGGGG-
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCHHCHHH-HCCCCCCCCCCCCCCCCCCEECCCHH-
T ss_conf 6885889999999999998789988078581889999845750573215155-42986589988724553411227687-
Q ss_pred CCCCC-CCCEEEEEEEEECCCCH----------HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECC
Q ss_conf 66775-00114444557579833----------58999999999819996217179883288870011012321768878
Q gi|254780757|r 75 AENPN-RLQHYYQFQVIIKPNPL----------NLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDG 143 (307)
Q Consensus 75 GeNPN-Rlq~y~QfQVilKPsp~----------niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldG 143 (307)
|-- --.|+.=|+.+=.=|-. ...++-.+=|..+||++. +|-+.|+=|+. -|--|---||-.||
T Consensus 134 --~VG~t~rH~T~FEMlGn~SFg~~~~~~YfK~Eai~~a~e~lt~~Gi~~~--~I~~~enfW~~--GGpcGPc~Ei~~d~ 207 (260)
T 2ztg_A 134 --SVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELLNELGVKKE--DIVYKEEPWAG--GGNAGPCLEAIVGG 207 (260)
T ss_dssp --GTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCCGG--GCEEEEEEEEE--TTEEEEEEEEEETT
T ss_pred --HCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH--HCCCCCCCCCC--CCCCCCCEEEEECC
T ss_conf --6398876525353065451289557777888999999999998399899--91035675224--89964887026276
Q ss_pred EEEHHHHHHH---HH-CCCCCC--------CCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 7414777899---86-682577--------51456787899999998699821
Q gi|254780757|r 144 MEISQFTYFQ---QV-CGIECS--------PISGEITYGLERLAMYVQNVNSV 184 (307)
Q Consensus 144 MEItQFTYFQ---Qv-GGi~c~--------pv~~EiTYGLERiaMylQ~vdnv 184 (307)
+||--.-+.| .- |.++.. --.+.--|||||||+.+|++.+|
T Consensus 208 lEiwNlVFmq~~~~~~G~~~~~~~~~~plp~k~VDTG~GLERl~~vlqg~~tv 260 (260)
T 2ztg_A 208 LEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGYGLERFVWASKGTPTV 260 (260)
T ss_dssp EEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSH
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 11230000124658998702365446647887347786456654311798885
No 4
>>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:1-266)
Probab=97.97 E-value=3.7e-05 Score=58.07 Aligned_cols=172 Identities=22% Similarity=0.326 Sum_probs=118.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CEEEECCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 35677779999999999998669---5896116754---------3332--24857898744834401676415578876
Q gi|254780757|r 6 NKKNDLSFQNIILTLTQYWAQQG---CTILQPYDME---------VGAG--TFHPSTTLRALGPLSWKAAYVQPSRRPLD 71 (307)
Q Consensus 6 ~~~~~~~fq~ii~~L~~fW~~~G---C~i~qpyd~e---------~GAg--T~hp~T~lr~lg~~pw~~aYvqPsrRP~D 71 (307)
-...+|+.++|..+-.+|..++| ..++.+|.+- +.|| .|-|.-.-...-|..-+++-+|||.|-.|
T Consensus 52 ~~~~~~~~~eir~~Fl~FF~~kg~~~H~~i~~~pvv~r~d~~llft~Agm~~Fqp~~l~G~~~pp~~~l~~sQ~CiR~nD 131 (266)
T 2zze_A 52 GIPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTD 131 (266)
T ss_dssp SSSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTT
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 87775899999999999838688899727715782779999814770366336440047765799997246610000373
Q ss_pred CCCCCCCCC-CCEEEEEEEEECCCCH----------HHHHHHHHHH-HHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE
Q ss_conf 554667750-0114444557579833----------5899999999-981999621717988328887001101232176
Q gi|254780757|r 72 GRYAENPNR-LQHYYQFQVIIKPNPL----------NLQNLYIESL-KAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC 139 (307)
Q Consensus 72 gRYGeNPNR-lq~y~QfQVilKPsp~----------niq~lYl~SL-~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv 139 (307)
=. |--| -.|+.=|+.+=-=|-. ...++-.+=| +.+||++. .|.|.|+=|+- -|-.|=--||
T Consensus 132 ld---nVG~t~RH~T~FEMlGn~SFgd~~~~~YfK~eaI~~a~eflt~~lgi~~~--~l~~~en~W~g--gGp~GPc~Ei 204 (266)
T 2zze_A 132 ID---NVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPE--DITFKENPWAG--GGNAGPAFEV 204 (266)
T ss_dssp GG---GTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGG--GEEEEECCEEE--TTEEECEEEE
T ss_pred HH---HCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEECHH--HHCCCCCCCCC--CCCCCCCEEE
T ss_conf 76---45788864176741522513899701768998999999974112443576--60654675568--9898788668
Q ss_pred EECCEEEHHHHHHHH----HCCCC----------CCC---CHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 887874147778998----66825----------775---1456787899999998699821
Q gi|254780757|r 140 WCDGMEISQFTYFQQ----VCGIE----------CSP---ISGEITYGLERLAMYVQNVNSV 184 (307)
Q Consensus 140 wldGMEItQFTYFQQ----vGGi~----------c~p---v~~EiTYGLERiaMylQ~vdnv 184 (307)
-.||+||--.-++|- -|+++ ..| -.+.--|||||||+.+||+.+|
T Consensus 205 ~~d~lEiwNlVFmq~~~~~dGs~~~~~~~~~~~~l~~L~~k~VDTG~GlERl~~i~qg~~tv 266 (266)
T 2zze_A 205 LYRGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTA 266 (266)
T ss_dssp EETTEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSH
T ss_pred EEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 98036510010100354888876644233453024568777668887899999998289972
No 5
>>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} (A:129-271,A:422-557)
Probab=97.25 E-value=0.0038 Score=43.54 Aligned_cols=175 Identities=16% Similarity=0.136 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-----C-------------C--CHHH-HHHHCCCCCCEEEEECCCCCC
Q ss_conf 77999999999999866958961167543332-----2-------------4--8578-987448344016764155788
Q gi|254780757|r 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAG-----T-------------F--HPST-TLRALGPLSWKAAYVQPSRRP 69 (307)
Q Consensus 11 ~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAg-----T-------------~--hp~T-~lr~lg~~pw~~aYvqPsrRP 69 (307)
+....|+.++.+|-..+|..-+.+--++.-.| . . +|.. ..|++-..|-++-|+.+|.|.
T Consensus 11 ~~r~~i~~~~r~~f~~~gf~ev~tP~l~~~~~~~~~~~~~~~~~~~g~~~~Lr~~~t~~~~~~~a~~~~r~~~i~~vfR~ 90 (279)
T 1c0a_A 11 KTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 90 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999999999999878988998986677787656676553554877410168784788998875066604885410033
Q ss_pred CCCCCCCCCCCCCEEEEEEE--EECCCCHHHH---HHHHHHHHHCCCCCCC------------------------CCEEE
Q ss_conf 76554667750011444455--7579833589---9999999981999621------------------------71798
Q gi|254780757|r 70 LDGRYAENPNRLQHYYQFQV--IIKPNPLNLQ---NLYIESLKAVGIDPLI------------------------HDVRF 120 (307)
Q Consensus 70 ~DgRYGeNPNRlq~y~QfQV--ilKPsp~niq---~lYl~SL~~iGid~~~------------------------hDIrF 120 (307)
.... +.|+--++|.-+ +--++++-.. ++--..++++|+.... +++|+
T Consensus 91 e~~~----~~h~~EF~q~~~e~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~ea~~~l~~~~~~~~~~~e~~~ 166 (279)
T 1c0a_A 91 EDLR----ADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTESKWAPLWVIDFPMFEDDGEGGL 166 (279)
T ss_dssp CCCB----TTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEESSCCCEEEEECCBSEEECSSSCE
T ss_pred CCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCC
T ss_conf 2247----766742102225555566677899985421566788618756644044245646348994254454443352
Q ss_pred EECC-------------CCCCHHHHC-------CCCEEEEECCEEEHHHHHHHHHC---CCC-----------------C
Q ss_conf 8328-------------887001101-------23217688787414777899866---825-----------------7
Q gi|254780757|r 121 VEDN-------------WESPTLGAW-------GLGWECWCDGMEISQFTYFQQVC---GIE-----------------C 160 (307)
Q Consensus 121 veDn-------------WEsPtLGAw-------GlGWEvwldGMEItQFTYFQQvG---Gi~-----------------c 160 (307)
++-- |.+++.... .-|+|+...|.++.-..-+++.. |++ -
T Consensus 167 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~d~~~~g~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (279)
T 1c0a_A 167 TAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG 246 (279)
T ss_dssp EESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 22100223441120787416998730688960459888634211107999999999985998568655699999997669
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 75145678789999999869982113320
Q gi|254780757|r 161 SPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307)
Q Consensus 161 ~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307)
.|.++-.--|||||+|.+|+++||+|+..
T Consensus 247 ~~p~~g~GlGlERl~mll~g~~~Irev~l 275 (279)
T 1c0a_A 247 TPPHAGLAFGLDRLTMLLTGTDNIRDVIA 275 (279)
T ss_dssp CCCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred CCCCCEEEEHHHHHHHHHCCCCCHHEEEC
T ss_conf 99976365489999999809996770841
No 6
>>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} (A:1-237)
Probab=96.93 E-value=0.0025 Score=44.81 Aligned_cols=173 Identities=21% Similarity=0.199 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCCCCCHHH-HHHHCCCCCCEEEEECCCCCCC----CC-CC
Q ss_conf 77799999999999986695896116754---------3332248578-9874483440167641557887----65-54
Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAGTFHPST-TLRALGPLSWKAAYVQPSRRPL----DG-RY 74 (307)
Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAgT~hp~T-~lr~lg~~pw~~aYvqPsrRP~----Dg-RY 74 (307)
+|+.++|..+-.+|..++|+.++.++.+= +.||--.-.- |+...-|...+++=+|+|-|-. |= .-
T Consensus 2 ~~t~~eiR~~Fl~FF~~kgH~~v~s~~lvp~~d~tllFtnAGM~~Fkp~flg~~~~~~~r~~~~QkCiR~~gkhnDle~V 81 (237)
T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 81 (237)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98899999999999986798885887867899997400103400162344488899888754555352147876536650
Q ss_pred CCCCCCCCEEEEEEEEECCCCH-----HHHHH-HHHHHHHCCCCCCC-------------------------CCEEEE-E
Q ss_conf 6677500114444557579833-----58999-99999981999621-------------------------717988-3
Q gi|254780757|r 75 AENPNRLQHYYQFQVIIKPNPL-----NLQNL-YIESLKAVGIDPLI-------------------------HDVRFV-E 122 (307)
Q Consensus 75 GeNPNRlq~y~QfQVilKPsp~-----niq~l-Yl~SL~~iGid~~~-------------------------hDIrFv-e 122 (307)
|. --.||.=|+.+=-=|-. ...+. +-=..+.+||++.. |=+|+- +
T Consensus 82 G~---t~rH~TfFEMlGnfSFgdYfK~eai~~awe~Lt~~l~l~~~rl~vTv~~~D~E~~~~w~~~~Gi~~~~I~~~~~~ 158 (237)
T 1yfs_A 82 GY---TSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE 158 (237)
T ss_dssp TT---BSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHH
T ss_pred CC---CCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 88---886531023536101289754678999999988875047751799854771777777777638660005752687
Q ss_pred CC-CCCCHHHHCCCCEEEEECC----------EEEHHHHHHHH---HCC-CC-CCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 28-8870011012321768878----------74147778998---668-25-77514567878999999986998211
Q gi|254780757|r 123 DN-WESPTLGAWGLGWECWCDG----------MEISQFTYFQQ---VCG-IE-CSPISGEITYGLERLAMYVQNVNSVY 185 (307)
Q Consensus 123 Dn-WEsPtLGAwGlGWEvwldG----------MEItQFTYFQQ---vGG-i~-c~pv~~EiTYGLERiaMylQ~vdnvy 185 (307)
|| |+.--.|.-|--=|+-.|+ +||--.-+.|- -.| +. +.--.+.--+||||||+.+|++.|+|
T Consensus 159 dNfW~~G~~GpcGPcsEI~yd~g~~~~~~~r~lEiwNlVFmq~~r~~dg~l~pL~~k~IDTGmGlERl~~ilQg~~s~y 237 (237)
T 1yfs_A 159 DNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 237 (237)
T ss_dssp HHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGG
T ss_pred CCEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEHEEEEEECCCCCEEECCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf 8656279988988760378970355478864555220010231126999775678760543413999999983888654
No 7
>>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:1-252)
Probab=96.69 E-value=0.0042 Score=43.19 Aligned_cols=170 Identities=22% Similarity=0.208 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCCCCCHHH-HHHHCCCCCCEEEEECCCCCCC----CC-CC
Q ss_conf 77799999999999986695896116754---------3332248578-9874483440167641557887----65-54
Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAGTFHPST-TLRALGPLSWKAAYVQPSRRPL----DG-RY 74 (307)
Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAgT~hp~T-~lr~lg~~pw~~aYvqPsrRP~----Dg-RY 74 (307)
.|+-++|..+-.+|..++|+.++.++.+= +.||--.-.- |+...-|..-+++-+|+|-|-. |= .-
T Consensus 1 ~mt~~eiR~~Fl~FF~~kgH~~i~s~slvp~~dptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~ggkhnDldnV 80 (252)
T 3hy0_A 1 SKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENV 80 (252)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEECCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
T ss_conf 97789999999999986898884887867799997201014523223655599999998731434152368887778773
Q ss_pred CCCCCCCCEEEEEEEEECCCCH--------------------------HH--------HHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 6677500114444557579833--------------------------58--------9999999998199962171798
Q gi|254780757|r 75 AENPNRLQHYYQFQVIIKPNPL--------------------------NL--------QNLYIESLKAVGIDPLIHDVRF 120 (307)
Q Consensus 75 GeNPNRlq~y~QfQVilKPsp~--------------------------ni--------q~lYl~SL~~iGid~~~hDIrF 120 (307)
|. --.||.=|..+=-=|-. .+ .+-|--=++.+||++ +|=+|+
T Consensus 81 G~---t~rH~TfFEMLGnfSFgdYfK~eai~~awefLt~~~~lgl~~~rl~vTv~~~D~ea~~iw~~~~gi~~-~~I~~l 156 (252)
T 3hy0_A 81 GY---TARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPR-ERIIRI 156 (252)
T ss_dssp TT---BSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCG-GGEEEE
T ss_pred CC---CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCH-HHEEEC
T ss_conf 88---88624768754231358746678999999987222202678320489842077788999997179866-877975
Q ss_pred E---------ECCCCCCHHHHCCCCEEEEECC-------------------EEEHHHHHHH---HH-CCC-CCCCCHHHH
Q ss_conf 8---------3288870011012321768878-------------------7414777899---86-682-577514567
Q gi|254780757|r 121 V---------EDNWESPTLGAWGLGWECWCDG-------------------MEISQFTYFQ---QV-CGI-ECSPISGEI 167 (307)
Q Consensus 121 v---------eDnWEsPtLGAwGlGWEvwldG-------------------MEItQFTYFQ---Qv-GGi-~c~pv~~Ei 167 (307)
- |+-|+.-.-|.-|=-=|+-.|+ +||--.-+.| .- |.+ ++.--.+.-
T Consensus 157 ~~~~~~~~~~dNfW~~G~~GpcGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDT 236 (252)
T 3hy0_A 157 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDT 236 (252)
T ss_dssp CSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEEECCCCCCCC
T ss_conf 77666666444721158988998874678823641258999987767764436604655621135899850477753331
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 8789999999869982
Q gi|254780757|r 168 TYGLERLAMYVQNVNS 183 (307)
Q Consensus 168 TYGLERiaMylQ~vdn 183 (307)
-+||||||+.+|++.|
T Consensus 237 GmGlERl~~vlQg~~s 252 (252)
T 3hy0_A 237 AMGLERIAAVLQHVNS 252 (252)
T ss_dssp EEEHHHHHHHHTTCSS
T ss_pred CCCHHHHHHHHCCCCC
T ss_conf 5479999999718997
No 8
>>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} (A:135-278,A:415-546)
Probab=95.69 E-value=0.22 Score=30.75 Aligned_cols=170 Identities=15% Similarity=0.213 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCC-----CCCCC---------------CCCHHHHHH-HCCCCCCEEEEECCCCCCCCC
Q ss_conf 999999999998669589611675-----43332---------------248578987-448344016764155788765
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQPYDM-----EVGAG---------------TFHPSTTLR-ALGPLSWKAAYVQPSRRPLDG 72 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~qpyd~-----e~GAg---------------T~hp~T~lr-~lg~~pw~~aYvqPsrRP~Dg 72 (307)
..|+.++.+|..++|.+-+.+=-+ +-++- +-.|...+. .+-+.+=++-|+.||.|..++
T Consensus 14 ~~I~~~ir~~~~~~Gf~Ei~TP~l~~~~~~~~~~~~~~~~~~~~~~~~L~~sp~~~~q~l~~~~~~k~f~ig~~FR~E~~ 93 (276)
T 1l0w_A 14 HRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL 93 (276)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCEEEECHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 99999999999877947973201035787425685246235888452356584798889987055635885343347999
Q ss_pred CCCCCCCCCCEEEEEEEEECC-CCHHHHH----HHHHHHHH-CCCCCCCCCEEEE--------ECCCC------------
Q ss_conf 546677500114444557579-8335899----99999998-1999621717988--------32888------------
Q gi|254780757|r 73 RYAENPNRLQHYYQFQVIIKP-NPLNLQN----LYIESLKA-VGIDPLIHDVRFV--------EDNWE------------ 126 (307)
Q Consensus 73 RYGeNPNRlq~y~QfQVilKP-sp~niq~----lYl~SL~~-iGid~~~hDIrFv--------eDnWE------------ 126 (307)
+- -|+-.++|+-+=+.- +..++.+ |.-..+++ +++|+...--|.- ..+|-
T Consensus 94 ~~----~h~~EFtqld~e~~~~~~~~~~~~~e~li~~i~~~~~~~~~~~~f~ri~~~~~~f~~~~~~p~~~~~e~e~~l~ 169 (276)
T 1l0w_A 94 RA----DRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSREGFRFLWVVDFPLLEWDEEEEAWT 169 (276)
T ss_dssp CS----SCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEECCSCCEEEEECCBSBCCCTTTSCCC
T ss_pred CC----CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEECCCHHCCCC
T ss_conf 98----87852102245541255888876568999999999859876788665663463134564035213120212333
Q ss_pred ------------------CCHHHHCCCCEEEEECCEEEH-----------HHHHHHHH-----------------CCCCC
Q ss_conf ------------------700110123217688787414-----------77789986-----------------68257
Q gi|254780757|r 127 ------------------SPTLGAWGLGWECWCDGMEIS-----------QFTYFQQV-----------------CGIEC 160 (307)
Q Consensus 127 ------------------sPtLGAwGlGWEvwldGMEIt-----------QFTYFQQv-----------------GGi~c 160 (307)
.+.-.++.--.+.-+||.||. |-.-|.+. -...+
T Consensus 170 ~~~~vfi~~~p~~~~~~~~~~~~~~a~~~dl~~~g~Ei~~g~~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 249 (276)
T 1l0w_A 170 YMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGA 249 (276)
T ss_dssp BSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTC
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEECEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 45688678864114566439976732599962487898037173479999999999837990566767999999977699
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 7514567878999999986998211332
Q gi|254780757|r 161 SPISGEITYGLERLAMYVQNVNSVYDIV 188 (307)
Q Consensus 161 ~pv~~EiTYGLERiaMylQ~vdnvyDl~ 188 (307)
|.++-..-|+||++|++.+++||-|++
T Consensus 250 -pph~G~GlG~dRlvm~l~~~~~IrdVi 276 (276)
T 1l0w_A 250 -PPHGGIAWGLDRLLALMTGSPSIREVI 276 (276)
T ss_dssp -CCEEEEEEEHHHHHHHHHTCSSGGGGS
T ss_pred -CCCCEEEEHHHHHHHHHHCCCCHHEEE
T ss_conf -987657668999999980999576276
No 9
>>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} (A:)
Probab=85.85 E-value=0.16 Score=31.71 Aligned_cols=177 Identities=12% Similarity=0.034 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCC------CCC----CCC---------------CCCHHHHHHHC-CCCCCEEEEECCC
Q ss_conf 999999999999866958961167------543----332---------------24857898744-8344016764155
Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQPYD------MEV----GAG---------------TFHPSTTLRAL-GPLSWKAAYVQPS 66 (307)
Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qpyd------~e~----GAg---------------T~hp~T~lr~l-g~~pw~~aYvqPs 66 (307)
=..|+..+-+|..++|-+.+.+-- .+. .+| +-.|.-++..+ -..-=++--+-||
T Consensus 18 rs~i~~~~r~ff~~~gf~ev~tP~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~s~~l~~~~l~~~g~~~~~~i~~~ 97 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPN 97 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCE
T ss_conf 99999999999998899998377345667877776556766465366789766505698999999987411464453044
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEE-CCCCHHHHHHHHHHHH----H--------------------------CCCCC--
Q ss_conf 7887655466775001144445575-7983358999999999----8--------------------------19996--
Q gi|254780757|r 67 RRPLDGRYAENPNRLQHYYQFQVII-KPNPLNLQNLYIESLK----A--------------------------VGIDP-- 113 (307)
Q Consensus 67 rRP~DgRYGeNPNRlq~y~QfQVil-KPsp~niq~lYl~SL~----~--------------------------iGid~-- 113 (307)
.|-.+.+-- .+-++-.+.|..+-+ --...++..+--+.+. . .+.+.
T Consensus 98 fr~e~~~~~-~~~h~~eF~~le~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (294)
T 1nnh_A 98 IRLESRQKD-DGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDEKA 176 (294)
T ss_dssp ECCCCGGGC-SSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEEHHHHHHHTSSHHHH
T ss_pred ECCCCCCCC-CCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCC
T ss_conf 537877778-7755421127523882346999999999999999999998606434544540000064432024654330
Q ss_pred --CCCCEEE-----EECCCCCCHHHHCCCCEEEEECCEEE-----------HHHHHHHHHCCC-----------CC-CC-
Q ss_conf --2171798-----83288870011012321768878741-----------477789986682-----------57-75-
Q gi|254780757|r 114 --LIHDVRF-----VEDNWESPTLGAWGLGWECWCDGMEI-----------SQFTYFQQVCGI-----------EC-SP- 162 (307)
Q Consensus 114 --~~hDIrF-----veDnWEsPtLGAwGlGWEvwldGMEI-----------tQFTYFQQvGGi-----------~c-~p- 162 (307)
..++..+ .+-.+..+..++-+-.++.-++|.|+ .|--+|...|-- .- -|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~ 256 (294)
T 1nnh_A 177 SQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLK 256 (294)
T ss_dssp HHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCC
T ss_pred HHHCCCCEEECCCHHHHCCCCCCCCEEEEEEEEECCCEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 23315543541650320135678844545679713762145642255899999999998598989999999999719999
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 1456787899999998699821133206
Q gi|254780757|r 163 ISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 163 v~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
.++-.-.|+||++|++++..||+|++.=
T Consensus 257 p~~G~g~GleRl~m~l~g~~~Irdvi~F 284 (294)
T 1nnh_A 257 PSAGAGIGVERLVRFIVGAKHIAEVQPF 284 (294)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGCSS
T ss_pred CCCEEEEHHHHHHHHHHCCCCHHHEECC
T ss_conf 9758866699999999289848725316
No 10
>>3e9h_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm; HET: KAA; 2.10A {Bacillus stearothermophilus} PDB: 3e9i_A* (A:146-493)
Probab=85.74 E-value=0.32 Score=29.56 Aligned_cols=172 Identities=19% Similarity=0.173 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEC-----CCCCCCCC---------------CCCHHHHHHHCC-CCCCEEEEECCCCCCCCC
Q ss_conf 999999999998669589611-----67543332---------------248578987448-344016764155788765
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQP-----YDMEVGAG---------------TFHPSTTLRALG-PLSWKAAYVQPSRRPLDG 72 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~qp-----yd~e~GAg---------------T~hp~T~lr~lg-~~pw~~aYvqPsrRP~Dg 72 (307)
..++..+-+|-.++|-+-+++ .+.|-++. |-.|.-.+..+- +.-=++-.+.||+|..++
T Consensus 33 s~i~~~~r~~l~~~~f~Ev~tP~L~~~~~e~~~~~f~~~~~~~g~~~~L~~Spql~~q~~~~~~~~~vf~i~~~fR~E~~ 112 (348)
T 3e9h_A 33 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGI 112 (348)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHCCCCCC
T ss_conf 99999999999975971015982044247866664312544688574314797899999987130315885001246767
Q ss_pred CCCCCCCCCCEEEEEEEEECCC-CHHHHHHHHHHH-----------------------------------HH-CCCCCC-
Q ss_conf 5466775001144445575798-335899999999-----------------------------------98-199962-
Q gi|254780757|r 73 RYAENPNRLQHYYQFQVIIKPN-PLNLQNLYIESL-----------------------------------KA-VGIDPL- 114 (307)
Q Consensus 73 RYGeNPNRlq~y~QfQVilKPs-p~niq~lYl~SL-----------------------------------~~-iGid~~- 114 (307)
+-.-+| -++|.-+-+.=. -+++.++--+-+ +. .++++.
T Consensus 113 ~~~h~~----EFtqld~e~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 188 (348)
T 3e9h_A 113 STRHNP----EFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWR 188 (348)
T ss_dssp BTTBCS----EEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECCSSCEEEEHHHHHHHHTCCCTTS
T ss_pred CCCCCC----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHH
T ss_conf 876750----2210103442687899988999999999999858850123356530355312203776666522772666
Q ss_pred ---------------------------------------CCCEEEEE--CCCCCC------HHHHCCCCEEEEECCEEEH
Q ss_conf ---------------------------------------17179883--288870------0110123217688787414
Q gi|254780757|r 115 ---------------------------------------IHDVRFVE--DNWESP------TLGAWGLGWECWCDGMEIS 147 (307)
Q Consensus 115 ---------------------------------------~hDIrFve--DnWEsP------tLGAwGlGWEvwldGMEIt 147 (307)
..+..|+- ..-.+| .-+.+..-+++-++|+||.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~~l~~~g~Ei~ 268 (348)
T 3e9h_A 189 QMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELFIVGREHA 268 (348)
T ss_dssp CCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCCCCEEEEECEEECCEECC
T ss_conf 55468999999860766576443024678999999987507866862686403713312899856667803342577502
Q ss_pred H-----------H---------------------HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7-----------7---------------------78998668257751456787899999998699821133206
Q gi|254780757|r 148 Q-----------F---------------------TYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 148 Q-----------F---------------------TYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
- . -+|...-...+ |.++-+.-|+||+.|++-+++||-|++.=
T Consensus 269 ~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-pp~~G~giG~eRl~m~l~g~~~Irdv~~f 342 (348)
T 3e9h_A 269 NAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGM-PPTGGLGIGVDRLVMLLTNSPSIRDVLLF 342 (348)
T ss_dssp EEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCC-CSEEEEEEEHHHHHHHHHTCSSGGGSSSS
T ss_pred CCHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-CCCCEEHHHHHHHHHHHHCCCCHHHEECC
T ss_conf 442010699999999999999985379725678999999832899-99721449999999998379818862427
No 11
>>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A (A:69-271)
Probab=84.86 E-value=3.3 Score=22.27 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCC--------CCC---------------CCCH---HHHH------HHCCCCCCEE
Q ss_conf 999999999999866958961167543--------332---------------2485---7898------7448344016
Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQPYDMEV--------GAG---------------TFHP---STTL------RALGPLSWKA 60 (307)
Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qpyd~e~--------GAg---------------T~hp---~T~l------r~lg~~pw~~ 60 (307)
.+.|+..+.++..++|..-.++--++. |+. +.-| .... ....+.|-++
T Consensus 5 r~~i~~~ir~~~~~~Gf~ev~tP~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~t~~~~~~~~~~~~~~~~p~r~ 84 (203)
T 3dsq_A 5 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 84 (203)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 99999999999998899899763666888886248765320122345403211026542677877875530133687643
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEE--EECCCCH---HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCC
Q ss_conf 76415578876554667750011444455--7579833---589999999998199962171798832888700110123
Q gi|254780757|r 61 AYVQPSRRPLDGRYAENPNRLQHYYQFQV--IIKPNPL---NLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGL 135 (307)
Q Consensus 61 aYvqPsrRP~DgRYGeNPNRlq~y~QfQV--ilKPsp~---niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGl 135 (307)
.|+.||.|--+. ...|+-.++|.-+ +-++++. .+.++.-..++++|+.... +......-+.--....
T Consensus 85 ~~ig~vfR~e~~----~~~~~~EF~q~e~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~ 156 (203)
T 3dsq_A 85 FEIGTCYRKESQ----GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREFE----LVTESSVVYGDTVDVM 156 (203)
T ss_dssp EEEEEEECSCCS----SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCCCCE----EEECCCCSSCCCEEEE
T ss_pred EEEEECCCCCCC----CCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCE----EEECCCCCCCCEEECC
T ss_conf 998404576768----89968727873379992888999999999999999976998777----9852466526668548
Q ss_pred CEEEEE-CCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 217688-7874147778998668257751456787899999998699821
Q gi|254780757|r 136 GWECWC-DGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSV 184 (307)
Q Consensus 136 GWEvwl-dGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnv 184 (307)
||..+. .|+-.... ..-...-+-.....-+|+||++|.+-++++|
T Consensus 157 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~g~er~~~~~~~i~Di 202 (203)
T 3dsq_A 157 KGDLELASGAMGPHF----LDEKWEIFDPWVGLGFGLERLLMIREGTQHV 202 (203)
T ss_dssp ETTEEEEEEEEESCT----TTTTTTCCSCEEEEEEEHHHHHHHHHTCSCG
T ss_pred CCEEEECCCCCCHHH----HHHCCCCCCCCEEEECCHHHHHHHHCCCCCH
T ss_conf 876886467668999----9866899995289825199998876099857
No 12
>>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} (A:235-548)
Probab=84.74 E-value=0.88 Score=26.37 Aligned_cols=175 Identities=10% Similarity=-0.004 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCC----CCCC--------------CCCHHHHHHHCCC-CCCEEEEECCCCCCCCCC
Q ss_conf 99999999999986695896116754----3332--------------2485789874483-440167641557887655
Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQPYDME----VGAG--------------TFHPSTTLRALGP-LSWKAAYVQPSRRPLDGR 73 (307)
Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qpyd~e----~GAg--------------T~hp~T~lr~lg~-~pw~~aYvqPsrRP~DgR 73 (307)
-..+|..+.+|..++|-+=+++=.+- -||+ |-.|..++..+.. .-=++-.+.||.|..|+|
T Consensus 13 rs~i~~~ir~~~~~~~f~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~L~~spq~~~q~l~~~~~~~v~~i~~~fR~e~~~ 92 (314)
T 3i7f_A 13 QSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSN 92 (314)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCC
T ss_conf 99999999999987897898798575427776557201221004667642346776665432554323314210055344
Q ss_pred CCCCCCCCCEEEEEEEEECC-CC-HHHHHH--------HHHHHHHC----------------------------------
Q ss_conf 46677500114444557579-83-358999--------99999981----------------------------------
Q gi|254780757|r 74 YAENPNRLQHYYQFQVIIKP-NP-LNLQNL--------YIESLKAV---------------------------------- 109 (307)
Q Consensus 74 YGeNPNRlq~y~QfQVilKP-sp-~niq~l--------Yl~SL~~i---------------------------------- 109 (307)
=.-.. -..+|.-+-+.= +. +++.++ .-.-+...
T Consensus 93 ~~rh~---~eft~~d~e~~~~~~~~~~~~~~e~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
T 3i7f_A 93 TRRHL---TEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRLTYKEAIEMLR 169 (314)
T ss_dssp SSSCC---SCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCSCEEEEHHHHHHHHH
T ss_pred CCCCC---CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHCCHHHHHHHHH
T ss_conf 45677---512120100789988999999999889999999976466521001101553101357254357999999998
Q ss_pred ---CCC---------------------CCCCCEEEEECCCC--------CCHHHHCCCCEEEEECCEEEH----------
Q ss_conf ---999---------------------62171798832888--------700110123217688787414----------
Q gi|254780757|r 110 ---GID---------------------PLIHDVRFVEDNWE--------SPTLGAWGLGWECWCDGMEIS---------- 147 (307)
Q Consensus 110 ---Gid---------------------~~~hDIrFveDnWE--------sPtLGAwGlGWEvwldGMEIt---------- 147 (307)
... ...+.+....+... ++..+.+..-.++-++|.||.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~dl~~~g~Ei~~g~~r~~~~~ 249 (314)
T 3i7f_A 170 ASGETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPE 249 (314)
T ss_dssp HTTCCCCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHH
T ss_pred HHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEECCCCHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCHH
T ss_conf 61334353110153899998888887506898356576064296566889999572357998739889705234408799
Q ss_pred -HHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf -77789986682------------57751456787899999998699821133206
Q gi|254780757|r 148 -QFTYFQQVCGI------------ECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 148 -QFTYFQQvGGi------------~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
|-.-|...|.- .-.|..+-+..|+|||.|++.+.+||-|++.=
T Consensus 250 ~~~~~~~~~~~~~~~~~~~l~a~~~g~pp~~G~alGldRl~m~l~~~~~ir~Vi~F 305 (314)
T 3i7f_A 250 FLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLF 305 (314)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHEEECC
T ss_conf 99999998599999999999996679998614654899999998089837759716
No 13
>>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459} (A:)
Probab=83.40 E-value=2.1 Score=23.62 Aligned_cols=73 Identities=22% Similarity=0.391 Sum_probs=51.8
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 89874483440167641557887655466775001144445575798335899999999981999621717988328887
Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWES 127 (307)
Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEs 127 (307)
..|..+|-.++-...+...-.+.+-. .-||+| ++|...++..|++|. ++-+|+|+.++
T Consensus 69 ~~l~~~gl~~~f~~~~~~~~~~~~~~----------------~~KP~~----~~~~~a~~~~~~~p~--~~l~VgD~~~~ 126 (189)
T 3ib6_A 69 RVLTNFGIIDYFDFIYASNSELQPGK----------------MEKPDK----TIFDFTLNALQIDKT--EAVMVGNTFES 126 (189)
T ss_dssp HHHHHTTCGGGEEEEEECCTTSSTTC----------------CCTTSH----HHHHHHHHHHTCCGG--GEEEEESBTTT
T ss_pred HHHHHCCCHHHCCEEEEECCCHHHCC----------------CCCCCH----HHHHHHHHHHCCCCC--CEEEEECCHHH
T ss_conf 99998699888888997157303038----------------889886----999999986322443--22799517187
Q ss_pred CHHHHCCCCEEE-EEC
Q ss_conf 001101232176-887
Q gi|254780757|r 128 PTLGAWGLGWEC-WCD 142 (307)
Q Consensus 128 PtLGAwGlGWEv-wld 142 (307)
--.+|...||-+ |+.
T Consensus 127 Di~~A~~aG~~~i~v~ 142 (189)
T 3ib6_A 127 DIIGANRAGIHAIWLQ 142 (189)
T ss_dssp THHHHHHTTCEEEEEC
T ss_pred HHHHHHHCCCEEEEEC
T ss_conf 7999998599899989
No 14
>>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235)
Probab=80.54 E-value=3.5 Score=22.02 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=37.9
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf 579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307)
Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307)
-||.|. +|..-++.+|++|. ++-||.|++++-..||...||- ||++
T Consensus 72 ~KP~~~----~~~~~~~~~~~~p~--~~i~VGD~~~~Di~~A~~aG~~ti~v~ 118 (150)
T 2om6_A 72 YKPRKE----XFEKVLNSFEVKPE--ESLHIGDTYAEDYQGARKVGXWAVWIN 118 (150)
T ss_dssp CTTCHH----HHHHHHHHTTCCGG--GEEEEESCTTTTHHHHHHTTSEEEEEC
T ss_pred CCCHHH----HHHHHHHHHCCCCC--CCEEECCCCHHHHHHHHHCCCEEEEEC
T ss_conf 674157----77789999603332--240443672866999998699899988
No 15
>>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, structural genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} (A:1-24,A:113-251)
Probab=77.21 E-value=5.5 Score=20.64 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCEEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf 0114444557-579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r 81 LQHYYQFQVI-IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307)
Q Consensus 81 lq~y~QfQVi-lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307)
|.+|+..-++ -||+|. .|..-++.+|++|. ++-||+|+.++-.+||--.||. ||+.
T Consensus 62 l~~~Fd~i~~~~KP~p~----~~~~~l~~l~v~p~--~~v~IGDs~~~Di~~A~~aGi~~v~v~ 119 (163)
T 2pke_A 62 LSDLFPRIEVVSEKDPQ----TYARVLSEFDLPAE--RFVXIGNSLRSDVEPVLAIGGWGIYTP 119 (163)
T ss_dssp GGGTCCCEEEESCCSHH----HHHHHHHHHTCCGG--GEEEEESCCCCCCHHHHHTTCEEEECC
T ss_pred HCCCCCCCCCCCCCCHH----HHHHHHHHHCCCCC--CEEEECCCCHHHHHHHHHCCCEEEEEC
T ss_conf 11211211002577548----99998876024431--034535783768999998599799978
No 16
>>1b8a_A Protein (aspartyl-tRNA synthetase); tRNA ligase,; HET: ATP; 1.90A {Pyrococcus kodakaraensis} (A:128-438)
Probab=76.60 E-value=1.7 Score=24.38 Aligned_cols=176 Identities=11% Similarity=0.072 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEC------------------CCCCCCCCCCCHHHHHHHC-CCCCCEEEEECCCCCCCCCCC
Q ss_conf 999999999998669589611------------------6754333224857898744-834401676415578876554
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQP------------------YDMEVGAGTFHPSTTLRAL-GPLSWKAAYVQPSRRPLDGRY 74 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~qp------------------yd~e~GAgT~hp~T~lr~l-g~~pw~~aYvqPsrRP~DgRY 74 (307)
..++..+.+||.++|-+-+++ +|..-..=+-.|.-++..+ -..--++-.+-||.|..+.+-
T Consensus 14 ~~i~~~ir~~f~~~~f~ev~tP~l~~~~~e~~~~~~~~~~~~~~~~L~~s~q~~~~~~~~~~~~~v~~i~~~fR~e~~~~ 93 (311)
T 1b8a_A 14 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNT 93 (311)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 77998899988615948996353110244443345654323456544568566400000145331303531114565666
Q ss_pred CCCCCCCCEEEEEEEEECCCCHHHHHHHHHH---------------HHHCCCCCCC------------------------
Q ss_conf 6677500114444557579833589999999---------------9981999621------------------------
Q gi|254780757|r 75 AENPNRLQHYYQFQVIIKPNPLNLQNLYIES---------------LKAVGIDPLI------------------------ 115 (307)
Q Consensus 75 GeNPNRlq~y~QfQVilKPsp~niq~lYl~S---------------L~~iGid~~~------------------------ 115 (307)
...++-.++-.-..+. .-..+++.++--.. +..+.++...
T Consensus 94 ~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
T 1b8a_A 94 TRHLNEAWSIDSEMAF-IEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKEI 172 (311)
T ss_dssp SSCCSEEEEEEEEEES-CSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCCC
T ss_pred CCCCCEEEEHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 5124206653245666-630104688999999999877642363124321234555789862232899999998625436
Q ss_pred -----------------------CCEEEEEC---------CCCCCHHHHCCCCEEEEECCEEEH-----------HHHHH
Q ss_conf -----------------------71798832---------888700110123217688787414-----------77789
Q gi|254780757|r 116 -----------------------HDVRFVED---------NWESPTLGAWGLGWECWCDGMEIS-----------QFTYF 152 (307)
Q Consensus 116 -----------------------hDIrFveD---------nWEsPtLGAwGlGWEvwldGMEIt-----------QFTYF 152 (307)
.+..|.-+ ...++.....+..+++.+||.||. |-.-|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~g~Ei~~gs~r~~~~~~~~~~~ 252 (311)
T 1b8a_A 173 PWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQI 252 (311)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCEETTEEEEESEEEEEETTEEEEEEEEBCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHEECCCCCEEEECCHHHHCCHHHHHHHH
T ss_conf 75334474101110135531146623699837731133334356420234440333558889746066541899999999
Q ss_pred HHHCCC------------CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 986682------------57751456787899999998699821133206
Q gi|254780757|r 153 QQVCGI------------ECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 153 QQvGGi------------~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
.+.+-- .=.|..+=+.-|+||+.|.+-+.+||-|+++=
T Consensus 253 ~~~~~~~~~~~~~~~a~~~g~pph~G~alG~dRlvm~l~~~~~IrdVi~F 302 (311)
T 1b8a_A 253 KEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILF 302 (311)
T ss_dssp HHTTCCGGGGHHHHHTTSBCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHEEECC
T ss_conf 98498978999999996649999823767999999998099928827758
No 17
>>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} (A:157-521)
Probab=75.72 E-value=1.9 Score=23.89 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCCEEEE-----CCCCCCCCCCC---------------CHHHHHHHC-CCCCCEEEEECCCCCCCCC
Q ss_conf 99999999999866958961-----16754333224---------------857898744-8344016764155788765
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQ-----PYDMEVGAGTF---------------HPSTTLRAL-GPLSWKAAYVQPSRRPLDG 72 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~q-----pyd~e~GAgT~---------------hp~T~lr~l-g~~pw~~aYvqPsrRP~Dg 72 (307)
..|+..+-+|..++|++-++ +.+.+-++--| .|.-++..+ ...--++-.+-||.|--+.
T Consensus 24 s~i~~~~r~~~~~~~f~Ev~tP~L~~~~~~~~~~~f~~~~~~~~~~~~L~~Spql~~q~~~~~g~~~vf~i~~~FR~E~~ 103 (365)
T 3bju_A 24 SKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGI 103 (365)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 78887777533146259997356413577654544211113587023203331245667664240366664321264444
Q ss_pred CCCCCCCC
Q ss_conf 54667750
Q gi|254780757|r 73 RYAENPNR 80 (307)
Q Consensus 73 RYGeNPNR 80 (307)
+=--+|.-
T Consensus 104 ~~~~~~Ef 111 (365)
T 3bju_A 104 DLTHNPEF 111 (365)
T ss_dssp BTTBCSEE
T ss_pred CCCCCHHH
T ss_conf 44244010
No 18
>>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} (A:105-422)
Probab=75.03 E-value=3 Score=22.48 Aligned_cols=173 Identities=18% Similarity=0.226 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHCCCEEE-ECCCCCCCCC---CCCHHHHHH---HCCCCC--C---------EEEEECCCCCCCCCCCC
Q ss_conf 9999999999986695896-1167543332---248578987---448344--0---------16764155788765546
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTIL-QPYDMEVGAG---TFHPSTTLR---ALGPLS--W---------KAAYVQPSRRPLDGRYA 75 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~-qpyd~e~GAg---T~hp~T~lr---~lg~~p--w---------~~aYvqPsrRP~DgRYG 75 (307)
..++..+.+|..++|-+-+ -|.....++. .+-..+.++ .|-..| + ++--+.||.|..++|=.
T Consensus 25 s~i~~~~r~~~~~~~f~ev~tP~l~~~~~~~~~~~~~~~~~~~~~~L~~Spq~~kq~~~~~~~~~f~ia~~fR~e~~~~~ 104 (318)
T 1n9w_A 25 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTS 104 (318)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHHHHHSEEEEEEEC---------
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
T ss_conf 99999997657638978643974445557777775787732202576651999987530243541787410054546664
Q ss_pred CCCCCCCEEEEEEEEECC--CCHHHHHHH---HHH------------HHHCCCCCCCC----------------------
Q ss_conf 677500114444557579--833589999---999------------99819996217----------------------
Q gi|254780757|r 76 ENPNRLQHYYQFQVIIKP--NPLNLQNLY---IES------------LKAVGIDPLIH---------------------- 116 (307)
Q Consensus 76 eNPNRlq~y~QfQVilKP--sp~niq~lY---l~S------------L~~iGid~~~h---------------------- 116 (307)
.. |-.++|.-+=+.= +-+++.++- +.. ...+.++...-
T Consensus 105 rh---l~Eft~ld~e~~~~~~~~~~~~~~e~ll~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (318)
T 1n9w_A 105 RH---LNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGY 181 (318)
T ss_dssp -------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTSCC
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 56---860364787887763156677777778999999997000789998488641033314546699999999874088
Q ss_pred ------------------------CEEEEEC-------CCCCCHHHHCCCCEEEEECCEEEH-----------HHH----
Q ss_conf ------------------------1798832-------888700110123217688787414-----------777----
Q gi|254780757|r 117 ------------------------DVRFVED-------NWESPTLGAWGLGWECWCDGMEIS-----------QFT---- 150 (307)
Q Consensus 117 ------------------------DIrFveD-------nWEsPtLGAwGlGWEvwldGMEIt-----------QFT---- 150 (307)
+.-|+.+ --.+++-++.+.=+++.++|.|+. |-.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~g~Ei~~g~~r~~~~~~l~~~~~~ 261 (318)
T 1n9w_A 182 PVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKA 261 (318)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCHHHCCCCCCCEEEEEEEECCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 75677679999999999776507953999688245285033046775423342235778998522113789999999997
Q ss_pred ---------HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf ---------8998668257751456787899999998699821133206
Q gi|254780757|r 151 ---------YFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 151 ---------YFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
.|....-. -.|..+-+.-|+||+.|++-|.+||-+++.=
T Consensus 262 ~~~~~~~~~~~l~a~~~-G~pp~~G~~lGleRl~m~~~g~~~ir~Vi~F 309 (318)
T 1n9w_A 262 KGMDPEAFHGYLEVFKY-GMPPHGGFAIGAERLTQKLLGLPNVRYARAF 309 (318)
T ss_dssp TTCCGGGGHHHHGGGGB-CCCSEEEEEEEHHHHHHHHTTCSSGGGGCSC
T ss_pred CCCCHHHHHHHHHHHHC-CCCCCCEEEEHHHHHHHHHHCCCCHHEEECC
T ss_conf 59898999999999665-9999744767999999998099847525447
No 19
>>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} (A:125-429)
Probab=71.15 E-value=3.2 Score=22.37 Aligned_cols=174 Identities=11% Similarity=0.043 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEC------------------CCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 999999999998669589611------------------67543332248578987448344016764155788765546
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQP------------------YDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYA 75 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~qp------------------yd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYG 75 (307)
..++..+.+|+.++|-+-+++ ++.+--+=|-.|.-+.+.+-.---++-.+-||.|..+++-.
T Consensus 14 s~i~~~~r~~~~~~~f~ev~tP~l~~s~~e~~~~~~~~~~~g~~~~L~~s~q~~k~~~~~~~~~~~~i~~~fr~e~~~~~ 93 (305)
T 1wyd_A 14 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTP 93 (305)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSS
T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHH
T ss_conf 99999988754224513432510102245554444432111113333318899999986303550798530035430012
Q ss_pred CCCCCCCEEEEEEEEECCCCH-HH---HHHHHHHHH----------------------------------HCC-CCCCC-
Q ss_conf 677500114444557579833-58---999999999----------------------------------819-99621-
Q gi|254780757|r 76 ENPNRLQHYYQFQVIIKPNPL-NL---QNLYIESLK----------------------------------AVG-IDPLI- 115 (307)
Q Consensus 76 eNPNRlq~y~QfQVilKPsp~-ni---q~lYl~SL~----------------------------------~iG-id~~~- 115 (307)
. ++--++|...-+.-.-. .+ .+-++.++- ..+ ++...
T Consensus 94 ~---h~~EFt~ld~e~~~~~~~~~~~~~e~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (305)
T 1wyd_A 94 F---HLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYNI 170 (305)
T ss_dssp S---CCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSSCCC
T ss_pred H---CCCCEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 0---4431113156664301204567676778889999875020122222567842458587767888999987607865
Q ss_pred --------------------CCEEEEE------C--CCCCCHHHHCCCCEEEEECCEEEH-----------HHHHHHHHC
Q ss_conf --------------------7179883------2--888700110123217688787414-----------777899866
Q gi|254780757|r 116 --------------------HDVRFVE------D--NWESPTLGAWGLGWECWCDGMEIS-----------QFTYFQQVC 156 (307)
Q Consensus 116 --------------------hDIrFve------D--nWEsPtLGAwGlGWEvwldGMEIt-----------QFTYFQQvG 156 (307)
..+.++. + .=.++....++.-++.-++|.||. |-..|...|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~g~Ei~~g~~r~~~~~~~~~~~~~~~ 250 (305)
T 1wyd_A 171 KFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKG 250 (305)
T ss_dssp CTTSCCCHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEECCHHHHCCHHHHHHHHHHCC
T ss_conf 33344346777420111256627996682003632223679996600002100384898124355455999999999859
Q ss_pred C------------CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 8------------257751456787899999998699821133206
Q gi|254780757|r 157 G------------IECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 157 G------------i~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
- -.=-|.++-+.-|+||++|++.++.||-|++.=
T Consensus 251 ~~~~~~~~~l~~~~~g~pp~~G~giG~dRl~m~l~~~~~ir~Vi~F 296 (305)
T 1wyd_A 251 LKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPF 296 (305)
T ss_dssp CCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSS
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHEEECC
T ss_conf 8978999999998659999723777899999998189957548768
No 20
>>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284)
Probab=63.33 E-value=8.4 Score=19.27 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=74.7
Q ss_pred HHHHCCCEEEECCCCCCCCCCCCH--HHHHHHCCCCCCEEEEECCC-CCCCCCCCCCC-CCCCCEEEEEEEEECCCCHHH
Q ss_conf 998669589611675433322485--78987448344016764155-78876554667-750011444455757983358
Q gi|254780757|r 23 YWAQQGCTILQPYDMEVGAGTFHP--STTLRALGPLSWKAAYVQPS-RRPLDGRYAEN-PNRLQHYYQFQVIIKPNPLNL 98 (307)
Q Consensus 23 fW~~~GC~i~qpyd~e~GAgT~hp--~T~lr~lg~~pw~~aYvqPs-rRP~DgRYGeN-PNRlq~y~QfQVilKPsp~ni 98 (307)
..++....+..=..+-.--.+.-| ..+|..|-..-.+++.|--+ .|..+...-.- -.-+..+++-+++- ...+.-
T Consensus 10 ~~~~~~~~~~d~dg~l~~~~~~~pg~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~g~~~~f~~~~~s-~~~KP~ 88 (162)
T 2hx1_A 10 LLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSITADKIIS-SDSQXF 88 (162)
T ss_dssp HGGGCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCCGGGEEE-HSSHHH
T ss_pred HHHCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCHHEEEC-CCHHHH
T ss_conf 9961999999187801739984831999999999869958999689998769999885402444533103752-262888
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf 9999999998199962171798832888700110123217-68878
Q gi|254780757|r 99 QNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307)
Q Consensus 99 q~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307)
-++|..-++.+|+++. ++-||.|+=++--.+|-..||. ||+..
T Consensus 89 ~~~~~~~~~~~~~~~~--~~l~VgD~~~~Di~~A~~~G~~~i~v~~ 132 (162)
T 2hx1_A 89 XFAYDXLRQKXEISKR--EILXVGDTLHTDILGGNKFGLDTALVLT 132 (162)
T ss_dssp HHHHHHHHTTSCCCGG--GEEEEESCTTTHHHHHHHHTCEEEEESS
T ss_pred HHHHHHHHHHCCCCCC--EEEEECCCCHHHHHHHHHCCCCEEEECC
T ss_conf 9899887650599835--4999938807999999987998999899
No 21
>>3g1z_A Putative lysyl-tRNA synthetase; drug target, nucleotide, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: AMP; 1.95A {Salmonella typhimurium} (A:)
Probab=60.49 E-value=1.3 Score=25.10 Aligned_cols=173 Identities=17% Similarity=0.118 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEC-----CCCCCC--------------------CCCCCHHHHHHHCCC-CCCEEEEECCC
Q ss_conf 9999999999998669589611-----675433--------------------322485789874483-44016764155
Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQP-----YDMEVG--------------------AGTFHPSTTLRALGP-LSWKAAYVQPS 66 (307)
Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qp-----yd~e~G--------------------AgT~hp~T~lr~lg~-~pw~~aYvqPs 66 (307)
-..|+...-+|+.++|.+-+++ ++.|-+ +-|-.|..++..+.. .-=++-.+-||
T Consensus 20 rs~i~~~ir~ff~~~gF~Ev~TPil~~~~~eg~~~~~~~~~~~~~~~~~~~~~~L~~Spq~~~q~~~~~~~~~vf~i~~~ 99 (326)
T 3g1z_A 20 RAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGINLYLMTSPEYHMKRLLAAGCGPVFQLCRS 99 (326)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECC---CCCEEEEECSCSHHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999999988897998798216889876224025454146665678456886685555121102574412122434
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEC-CCCHHHHHHHHHHHHHC------------------------CCCC--------
Q ss_conf 78876554667750011444455757-98335899999999981------------------------9996--------
Q gi|254780757|r 67 RRPLDGRYAENPNRLQHYYQFQVIIK-PNPLNLQNLYIESLKAV------------------------GIDP-------- 113 (307)
Q Consensus 67 rRP~DgRYGeNPNRlq~y~QfQVilK-Psp~niq~lYl~SL~~i------------------------Gid~-------- 113 (307)
.|-.|+|--.+|-.-|. -.... -..+++.++--+=++.+ +.+.
T Consensus 100 fR~E~~~~~~~~eft~~----d~~~~~~~~~~~~~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (326)
T 3g1z_A 100 FRNEEMGRHHNPEFTML----EWYRPHYDMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLREAAA 175 (326)
T ss_dssp ECCCCCBTTBCSEEEEE----EEEEETCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHSCCTTTCCHHHHHHHHH
T ss_pred HCCCCCCCCCCHHHHCC----HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 41467655652021032----04431688999999999999988742677420364421010144632374056799999
Q ss_pred ------------------------------CCCCEEEEEC-CCC-------CCHHHHCCCCEEEEECCEEEH--------
Q ss_conf ------------------------------2171798832-888-------700110123217688787414--------
Q gi|254780757|r 114 ------------------------------LIHDVRFVED-NWE-------SPTLGAWGLGWECWCDGMEIS-------- 147 (307)
Q Consensus 114 ------------------------------~~hDIrFveD-nWE-------sPtLGAwGlGWEvwldGMEIt-------- 147 (307)
...+--++.+ .-+ +...+.+..-|+..++|+||.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~Ei~~g~~r~~~ 255 (326)
T 3g1z_A 176 KLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFIYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTD 255 (326)
T ss_dssp HTTCHHHHHHCCCHHHHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCC
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHEECHHHCCCCCCCCCCCCEECCCCCEECCCEEEEEC
T ss_conf 86321455344562089999987556765076786799943343110110246798623231222467434042015506
Q ss_pred ---HHHHHHHHCC-----C--------------C-CCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ---7778998668-----2--------------5-775145678789999999869982113320
Q gi|254780757|r 148 ---QFTYFQQVCG-----I--------------E-CSPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307)
Q Consensus 148 ---QFTYFQQvGG-----i--------------~-c~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307)
|-.-|.+.|- . . =.|.++-+..|+||+.|++.+.+||-|++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~pp~~G~glG~eRlvm~l~~~~~I~~vi~ 320 (326)
T 3g1z_A 256 AREQQQRFEQDNRKRAARGLPQQPIDQNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIA 320 (326)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHCCCCEEEEEEEHHHHHHHHHTCSSGGGTSS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHHCCC
T ss_conf 48899999999999983799700205999999775989972687769999999808994884536
No 22
>>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} (A:169-487)
Probab=57.13 E-value=2 Score=23.73 Aligned_cols=174 Identities=11% Similarity=0.043 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHCCCEEEECCC-----CCCC-------------CCCCCHHHHHHHCCCCC-CEEEEECCCCCCCCCCC
Q ss_conf 99999999999866958961167-----5433-------------32248578987448344-01676415578876554
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQPYD-----MEVG-------------AGTFHPSTTLRALGPLS-WKAAYVQPSRRPLDGRY 74 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~qpyd-----~e~G-------------AgT~hp~T~lr~lg~~p-w~~aYvqPsrRP~DgRY 74 (307)
..+|..+-+|..++|.+-+++=- .|-+ +=+-.|..++..+.... =++-.+.||.|..+++-
T Consensus 14 ~~i~~~~r~~f~~~~f~ev~tP~l~~~~~~~~~~~f~~~~~~~~~~L~~spq~~~q~~~~~~~~~v~~i~~~fR~e~~~~ 93 (319)
T 1eov_A 14 AGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNT 93 (319)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEECCCEEECCCHHHHHHHHHHHCCCCEEECCCEEECCCCCC
T ss_conf 99999999999888999998903046788765574045542786543038788999998743587273166230577888
Q ss_pred CCCCCCCCEEEEEEEEECC--CCHHHHHHHHHHHH------------------------HCCCCC---------------
Q ss_conf 6677500114444557579--83358999999999------------------------819996---------------
Q gi|254780757|r 75 AENPNRLQHYYQFQVIIKP--NPLNLQNLYIESLK------------------------AVGIDP--------------- 113 (307)
Q Consensus 75 GeNPNRlq~y~QfQVilKP--sp~niq~lYl~SL~------------------------~iGid~--------------- 113 (307)
..+.... +|.-+=+.- +-.++.++--+.++ ..+.+.
T Consensus 94 ~~~~~ef---t~ld~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (319)
T 1eov_A 94 HRHMTEF---TGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEM 170 (319)
T ss_dssp TTCCSEE---EEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHH
T ss_pred CCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCEEEEEHHHHHHH
T ss_conf 6666114---4332656677799999999999999999999887566776530347712133157885788537879999
Q ss_pred ------------------------------CCCCEEEEECC-CCCC-------HHHHCCCCEEEEECCEEEH--------
Q ss_conf ------------------------------21717988328-8870-------0110123217688787414--------
Q gi|254780757|r 114 ------------------------------LIHDVRFVEDN-WESP-------TLGAWGLGWECWCDGMEIS-------- 147 (307)
Q Consensus 114 ------------------------------~~hDIrFveDn-WEsP-------tLGAwGlGWEvwldGMEIt-------- 147 (307)
.++.+...... +..| -.......+|+-++|+||.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~g~Ei~~g~~r~~~ 250 (319)
T 1eov_A 171 LRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHD 250 (319)
T ss_dssp HHHTTCCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCC
T ss_pred HHHHCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCC
T ss_conf 99735513641000218999999998886278728997371114720138899981406789986399997061676289
Q ss_pred ---HHHHHHHHCCCCC--------------CCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf ---7778998668257--------------751456787899999998699821133206
Q gi|254780757|r 148 ---QFTYFQQVCGIEC--------------SPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 148 ---QFTYFQQvGGi~c--------------~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
|-.-|...|-.+- .|.++-+.-|+||++|.+.+.+||-|++.=
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~pp~~G~glG~dRl~m~~~~~~~IrdVi~F 310 (319)
T 1eov_A 251 HALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLF 310 (319)
T ss_dssp HHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHEEECC
T ss_conf 999999999859894575699999995679999735766899999998299927827726
No 23
>>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264)
Probab=54.32 E-value=8.6 Score=19.21 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=64.8
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf 898744834401676415578876554667750-0114444557579833589999999998199962171798832888
Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNR-LQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWE 126 (307)
Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNR-lq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWE 126 (307)
.+++.|-..-++++.+--..+.+-.++-+.=+. +..-....-+.||+|+ .|+.-++.+|+++ ++.-||.||-.
T Consensus 28 e~l~~L~~~Gi~~~i~Tn~~~~~~~~~~~~l~~~~~~~~~~~~~~kp~p~----~~~~~~~~~~~~~--~~~~~vgdd~~ 101 (154)
T 1yv9_A 28 RFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTAKAI----IMERAIAHLGVEK--EQVIMVGDNYE 101 (154)
T ss_dssp HHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCGGGEEEHSHH----HHHHHHHHHCSCG--GGEEEEESCTT
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHH----HHHHHHHHHCCCC--CEEEEECCCHH
T ss_conf 99999997799789993899998799999998750755331204778167----7878899848984--54999899627
Q ss_pred CCHHHHCCCCEE-EEEC
Q ss_conf 700110123217-6887
Q gi|254780757|r 127 SPTLGAWGLGWE-CWCD 142 (307)
Q Consensus 127 sPtLGAwGlGWE-vwld 142 (307)
+-..||--.|+- ||++
T Consensus 102 ~Di~~A~~~G~~ti~v~ 118 (154)
T 1yv9_A 102 TDIQSGIQNGIDSLLVT 118 (154)
T ss_dssp THHHHHHHHTCEEEEET
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 89999998799899989
No 24
>>1pgs_A Peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase F; endoglycosidase; 1.80A {Elizabethkingia meningoseptica} (A:138-314)
Probab=51.20 E-value=3.1 Score=22.42 Aligned_cols=22 Identities=27% Similarity=0.815 Sum_probs=18.6
Q ss_pred CCCHHHHCCCCEEEEECCEEEH
Q ss_conf 8700110123217688787414
Q gi|254780757|r 126 ESPTLGAWGLGWECWCDGMEIS 147 (307)
Q Consensus 126 EsPtLGAwGlGWEvwldGMEIt 147 (307)
|.-+-|+|=.|=.=||+||||.
T Consensus 100 ~Gv~PGtW~ygR~GWCpG~~Vp 121 (177)
T 1pgs_A 100 NNQSPGNWTPDRAGWCPGMAVP 121 (177)
T ss_dssp CCCTTSCCSSCCSSCCTTSBCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6897886446667779887356
No 25
>>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (C:54-358)
Probab=49.14 E-value=19 Score=16.74 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=79.8
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHH---HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCH
Q ss_conf 483440167641557887655466775001144445575798335---89999999998199962171798832888700
Q gi|254780757|r 53 LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLN---LQNLYIESLKAVGIDPLIHDVRFVEDNWESPT 129 (307)
Q Consensus 53 lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~n---iq~lYl~SL~~iGid~~~hDIrFveDnWEsPt 129 (307)
-++.|.+..++.++.|+..+ ...-+...++|....+..++.+ +..+...-++++|++....-++-....|--|.
T Consensus 167 ~~~~~~~lFeig~Vf~~~~~---~~~~~~~e~~~~~~~~~~~~~~~~dlk~~~~~l~~~lgi~~~~~~~~~~~~~~~~pg 243 (305)
T 2odr_C 167 KKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPE 243 (305)
T ss_dssp TSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBCTT
T ss_pred CCCCCEEEEEEEEEECCCCC---CCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 79998179964325777764---556558500247799995787999999999999999778866999766758898997
Q ss_pred HHHCCCCEE----EEECCEEEHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 110123217----68878741477-7899866825775145678789999999869982113
Q gi|254780757|r 130 LGAWGLGWE----CWCDGMEISQF-TYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYD 186 (307)
Q Consensus 130 LGAwGlGWE----vwldGMEItQF-TYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyD 186 (307)
..|-=.... .|+.---+.++ --.-.--|++-.....|| +||||+|-..+.+++-.
T Consensus 244 ~~a~i~~~~~~~g~~~~~g~~G~l~p~vl~~~gi~~~v~~~el--~l~~l~~l~~~i~di~~ 303 (305)
T 2odr_C 244 TQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGL--GVERLAMISGNFADVRE 303 (305)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEE--EHHHHHHHHTTCSCHHH
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEEEE--CHHHHHHHHCCCCHHHH
T ss_conf 4059999727598589998056527999987697984899985--68999998649946878
No 26
>>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} (A:159-504)
Probab=45.29 E-value=3.2 Score=22.29 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHCCCEEEE-----CCCCCCCCC---------------CCCHHHHHHHC-CCCCCEEEEECCCCCCCCC
Q ss_conf 99999999999866958961-----167543332---------------24857898744-8344016764155788765
Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQ-----PYDMEVGAG---------------TFHPSTTLRAL-GPLSWKAAYVQPSRRPLDG 72 (307)
Q Consensus 14 q~ii~~L~~fW~~~GC~i~q-----pyd~e~GAg---------------T~hp~T~lr~l-g~~pw~~aYvqPsrRP~Dg 72 (307)
..++..+.+|-.++|.+-++ +++.|-++. |-.|.-++..+ -.--=++-.+.||.|..|+
T Consensus 29 s~i~~~~r~~~~~~~f~Ev~tP~l~~~~~e~~~~~f~~~~~~~g~~~~L~~Spql~~q~~~~~~~~kvf~i~~~FR~E~~ 108 (346)
T 1e1o_A 29 SKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 108 (346)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCEECCCCCCCCCEECCCHHHHHHHHHHCCCCCEEEECCEEECCCC
T ss_conf 99999999999868928972985663678666764012577888554103585899999986022441786242336888
Q ss_pred CCCCCCCCCCEEEEEEEEEC-CCCHHHHHHH---HHHH------------------------------------------
Q ss_conf 54667750011444455757-9833589999---9999------------------------------------------
Q gi|254780757|r 73 RYAENPNRLQHYYQFQVIIK-PNPLNLQNLY---IESL------------------------------------------ 106 (307)
Q Consensus 73 RYGeNPNRlq~y~QfQVilK-Psp~niq~lY---l~SL------------------------------------------ 106 (307)
|--.+|--.| .-+-+. -+.+++.++- +.++
T Consensus 109 ~~~h~~EFt~----le~e~~~~~~~~~~~~~e~~i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (346)
T 1e1o_A 109 SVRHNPEFTM----MELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMA 184 (346)
T ss_dssp CC-CCSEEEE----EEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETTSCCEEEEHHHHHHHHSTTCCGG
T ss_pred CCCCCCCCHH----HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHH
T ss_conf 7554763030----113233189999999999999999998638844541055564079840060999999854777510
Q ss_pred ------------HHCCCCCCCC----------CEEEEECCCCCCH------------------HHHCCCCEEEEECCEEE
Q ss_conf ------------9819996217----------1798832888700------------------11012321768878741
Q gi|254780757|r 107 ------------KAVGIDPLIH----------DVRFVEDNWESPT------------------LGAWGLGWECWCDGMEI 146 (307)
Q Consensus 107 ------------~~iGid~~~h----------DIrFveDnWEsPt------------------LGAwGlGWEvwldGMEI 146 (307)
...++..... ...+++..+.+|+ -.....-+++-++|+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~dl~~~G~Ei 264 (346)
T 1e1o_A 185 DLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREI 264 (346)
T ss_dssp GGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEE
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCEEEEEEEEECCEEE
T ss_conf 16658999999997698535555655889999999888535787686678743584116789995634478775488998
Q ss_pred H-----------HHHHHHHHCCC-----C---------------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 4-----------77789986682-----5---------------7751456787899999998699821133206
Q gi|254780757|r 147 S-----------QFTYFQQVCGI-----E---------------CSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 147 t-----------QFTYFQQvGGi-----~---------------c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
. |---|-.-|.. + =.|..+-+.-|+||+.|++-|.+||-|.+.=
T Consensus 265 ~~G~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~G~pph~G~giG~eRl~m~~~g~~~Irdvi~F 339 (346)
T 1e1o_A 265 GNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILF 339 (346)
T ss_dssp EEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSS
T ss_pred EECEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCHHHEECCC
T ss_conf 545175479999999999999987548760223158999997589998513429999999998289808706268
No 27
>>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A (A:126-434)
Probab=45.16 E-value=4 Score=21.60 Aligned_cols=174 Identities=15% Similarity=0.087 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEC-----CCCCCCCC-------------CCCHHHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 9999999999998669589611-----67543332-------------24857898744834401676415578876554
Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQP-----YDMEVGAG-------------TFHPSTTLRALGPLSWKAAYVQPSRRPLDGRY 74 (307)
Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qp-----yd~e~GAg-------------T~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRY 74 (307)
-..||..+-+|+.++|.+-+++ ++.+-++- |-.|..+++.+-..-=++-.+-||.|..+++-
T Consensus 13 rs~i~~~iR~~f~~~~f~Ev~tP~l~~~~~~~~~~~f~~~~~~~~~~L~~s~q~~k~l~~~~~~~~f~i~~~fR~e~~~~ 92 (309)
T 1x54_A 13 KETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRT 92 (309)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHCCCHHEECCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 68899999976522112000233023204554321011100035554125510210000011324653332122355667
Q ss_pred CCCCCCCCEEEEEEEEECC-CCHHHHHHHHHHHHH---------------CCCCC--------C----------------
Q ss_conf 6677500114444557579-833589999999998---------------19996--------2----------------
Q gi|254780757|r 75 AENPNRLQHYYQFQVIIKP-NPLNLQNLYIESLKA---------------VGIDP--------L---------------- 114 (307)
Q Consensus 75 GeNPNRlq~y~QfQVilKP-sp~niq~lYl~SL~~---------------iGid~--------~---------------- 114 (307)
-.++.. ++|.-+=+.- +.+++.++--+-++. ++.+. .
T Consensus 93 ~rh~~E---Ft~le~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 169 (309)
T 1x54_A 93 RRHLTE---FWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSK 169 (309)
T ss_dssp SSCCSE---EEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHT
T ss_pred CCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 515772---20343224556764507788899999999875012788876314332101468973337799999999865
Q ss_pred ---------------------CCCEEEEE-----------CCCCCCHHHHCCCCEEEEECCEEEH-------HH----HH
Q ss_conf ---------------------17179883-----------2888700110123217688787414-------77----78
Q gi|254780757|r 115 ---------------------IHDVRFVE-----------DNWESPTLGAWGLGWECWCDGMEIS-------QF----TY 151 (307)
Q Consensus 115 ---------------------~hDIrFve-----------DnWEsPtLGAwGlGWEvwldGMEIt-------QF----TY 151 (307)
....-|+. ..+..+.....--+.|.-++|.||+ .| .=
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~el~~~~~Ei~~g~~r~~~~~~~~~~ 249 (309)
T 1x54_A 170 GVNVEWGDDLGADEERVLTEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNR 249 (309)
T ss_dssp TCCCCTTCCCCHHHHHHHHTTCSSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCHHHHCCCHHHHHHH
T ss_conf 99877465544156767999848987999870000431234675543200120033224828621656645789999999
Q ss_pred HHHHCCCC-------------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 99866825-------------7751456787899999998699821133206
Q gi|254780757|r 152 FQQVCGIE-------------CSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307)
Q Consensus 152 FQQvGGi~-------------c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307)
++.. |++ -.|..+-+.-|+|||.|++-+.+||-|++.=
T Consensus 250 ~~~~-~~~~~~~~~~l~~~~~g~pp~~G~alG~dRL~m~~~g~~~IrdV~~F 300 (309)
T 1x54_A 250 ILEE-GMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALF 300 (309)
T ss_dssp HHHT-TCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSS
T ss_pred HHHC-CCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHEEEEC
T ss_conf 9982-99978999999997649999742767899999998099817738407
No 28
>>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii OT3} (A:1-12,A:96-241)
Probab=42.20 E-value=24 Score=16.01 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=37.9
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCE-EEEECCEEEH
Q ss_conf 57983358999999999819996217179883288870011012321-7688787414
Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGW-ECWCDGMEIS 147 (307)
Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGW-EvwldGMEIt 147 (307)
.||+|+.++ .-++.+|+++ +++-||+|+.++-..||-..|| -||+..-..+
T Consensus 66 ~KP~~~~~~----~~~~~~~~~~--~~~l~VgD~~~~Di~~a~~aG~~ti~v~~~~~~ 117 (158)
T 2hoq_A 66 KKPHPKIFK----KALKAFNVKP--EEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHS 117 (158)
T ss_dssp CTTCHHHHH----HHHHHHTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEECCSCCC
T ss_pred CCCCCHHHH----HHHHHCCCHH--HHHEEECCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 333100112----3455200103--343032258376699999879979998279997
No 29
>>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis H37RV} (A:1-93,A:273-398)
Probab=40.39 E-value=12 Score=18.13 Aligned_cols=18 Identities=28% Similarity=0.807 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 557887655466775001
Q gi|254780757|r 65 PSRRPLDGRYAENPNRLQ 82 (307)
Q Consensus 65 PsrRP~DgRYGeNPNRlq 82 (307)
..-.|+|||||--|.+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~ 52 (219)
T 2fyf_A 35 TAIKPRDGRFGSGPSKVR 52 (219)
T ss_dssp GGGSCSSCBCCSSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 233789998488976889
No 30
>>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} (A:1-38,A:160-501)
Probab=40.16 E-value=25 Score=15.80 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=65.4
Q ss_pred HHCCCCCCEEEEECCCCCCCC--C--CCCCCCCCCCEEEEEEE--EECCCCH-------HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 744834401676415578876--5--54667750011444455--7579833-------589999999998199962171
Q gi|254780757|r 51 RALGPLSWKAAYVQPSRRPLD--G--RYAENPNRLQHYYQFQV--IIKPNPL-------NLQNLYIESLKAVGIDPLIHD 117 (307)
Q Consensus 51 r~lg~~pw~~aYvqPsrRP~D--g--RYGeNPNRlq~y~QfQV--ilKPsp~-------niq~lYl~SL~~iGid~~~hD 117 (307)
++...-|.+.+++.+|.|--- | |.|- .|+-+.+|... +.+|+-+ .+.++|.+.++.+||....
T Consensus 175 ~s~~~LPlrl~~~g~~FR~E~s~~~~~~Gl--~R~reF~q~e~~~f~~p~~e~~~~~~~~~~~~~~~~~~~lgl~~r~-- 250 (380)
T 1wle_A 175 VAFRDLPIRMVCSSTCYRAETDTGKEPWGL--YRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRV-- 250 (380)
T ss_dssp EEGGGCSEEEEEEEEEECCCCSCC--CCSS--SSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEE--
T ss_pred HHHHCCCCEEEEECCCEECCCCCCCCCCHH--HHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH--
T ss_conf 343102300133111010233578875004--5555411020256318964551899999998888999861750232--
Q ss_pred EEEEEC-CCCCCHHHHCCC---CEEEEE-------CCEEEHHHHHHHH---------HCCCCCCCCHH-HHHHHHHHHHH
Q ss_conf 798832-888700110123---217688-------7874147778998---------66825775145-67878999999
Q gi|254780757|r 118 VRFVED-NWESPTLGAWGL---GWECWC-------DGMEISQFTYFQQ---------VCGIECSPISG-EITYGLERLAM 176 (307)
Q Consensus 118 IrFveD-nWEsPtLGAwGl---GWEvwl-------dGMEItQFTYFQQ---------vGGi~c~pv~~-EiTYGLERiaM 176 (307)
++- .++ +|+... -=|+|. .-.-+++.+-||- -.|....|+.. +..-+.+|+-.
T Consensus 251 ---~~~~~~~---l~~~~~~~~diE~~~~~~~~~~ei~~~~~~~d~q~rr~~~~y~~~~~~~~~~~~i~~s~~~~~R~l~ 324 (380)
T 1wle_A 251 ---LDMPTQE---LGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLI 324 (380)
T ss_dssp ---EECCGGG---STTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHHHHHH
T ss_pred ---HHCCCCC---CCCCHHHEEEEEEEECCCCCEEEEEEECCCCHHHHHHHCCEEECCCCCEEEEEECCCCHHHHHHHHH
T ss_conf ---3217766---5611242775899845889778898771410587876156655799986666743063268878999
Q ss_pred HH
Q ss_conf 98
Q gi|254780757|r 177 YV 178 (307)
Q Consensus 177 yl 178 (307)
.+
T Consensus 325 al 326 (380)
T 1wle_A 325 AL 326 (380)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 31
>>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (A:54-362)
Probab=39.11 E-value=26 Score=15.69 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=87.3
Q ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHH---HHHHHHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 744834401676415578876554667750011444455757983358---99999999981999621717988328887
Q gi|254780757|r 51 RALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNL---QNLYIESLKAVGIDPLIHDVRFVEDNWES 127 (307)
Q Consensus 51 r~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~ni---q~lYl~SL~~iGid~~~hDIrFveDnWEs 127 (307)
..-++.|.+..++..+.|+.... .-.|+...+|--..+...+... ...-...++.+|+......++.....|..
T Consensus 165 ~~~~~~p~rlFEig~Vf~~~~~~---~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (309)
T 2odr_A 165 MNKKPLPFKLFSIDRCFRREQKE---DKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYT 241 (309)
T ss_dssp TTTSCSCEEEEEEEEEECCCSCC---CSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBC
T ss_pred HHCCCCCEEEECCCCCCCCCCCC---CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 84799982898556311677644---353287553788999958988999999999999997688708960677789999
Q ss_pred CHHHHC------CCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 001101------232176887874147778998668257751456787899999998699821133
Q gi|254780757|r 128 PTLGAW------GLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI 187 (307)
Q Consensus 128 PtLGAw------GlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl 187 (307)
|...|- .+|-...+.++..--=... .--|++-.....|| +||||+|..-+++++-.+
T Consensus 242 p~~~a~i~~~~~~~~~~~~~~~~g~v~p~~l-~~~~~~~~v~~~el--~l~~l~~~~~~~~~ir~~ 304 (309)
T 2odr_A 242 PETQTEVYAYHPKLKEWLEVATFGVYSPVAL-SKYGIDVPVMNLGL--GVERLAMISGNFADVREM 304 (309)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEEEEBCHHHH-HHTTCCSCEEEEEE--EHHHHHHHHTTCSCHHHH
T ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCHHHH-HHCCCCCCEEEEEE--CHHHHHHHHCCCCHHHHH
T ss_conf 9603799999588994899957737788999-86697987799885--489999997299657764
No 32
>>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (D:54-362)
Probab=39.11 E-value=26 Score=15.69 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=87.3
Q ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHH---HHHHHHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 744834401676415578876554667750011444455757983358---99999999981999621717988328887
Q gi|254780757|r 51 RALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNL---QNLYIESLKAVGIDPLIHDVRFVEDNWES 127 (307)
Q Consensus 51 r~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~ni---q~lYl~SL~~iGid~~~hDIrFveDnWEs 127 (307)
..-++.|.+..++..+.|+.... .-.|+...+|--..+...+... ...-...++.+|+......++.....|..
T Consensus 165 ~~~~~~p~rlFEig~Vf~~~~~~---~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (309)
T 2odr_D 165 MNKKPLPFKLFSIDRCFRREQKE---DKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYT 241 (309)
T ss_dssp TTTSCSCEEEEEEEEEECCCSCC---CSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCCEEEEECTTCCTTBC
T ss_pred HHCCCCCEEEECCCCCCCCCCCC---CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 84799981897646310677634---253287443688999968988999999999999997788718850677789999
Q ss_pred CHHHHC------CCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 001101------232176887874147778998668257751456787899999998699821133
Q gi|254780757|r 128 PTLGAW------GLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI 187 (307)
Q Consensus 128 PtLGAw------GlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl 187 (307)
|...|- .+|-...+.++..--=... .--|++-.....|| +||||+|..-+++++-.+
T Consensus 242 p~~~a~i~~~~~~~~~~~~~~~~g~v~p~~l-~~~~~~~~v~~~el--~l~~l~~~~~~~~~ir~~ 304 (309)
T 2odr_D 242 PETQTEVYAYHPKLKEWLEVATFGVYSPVAL-SKYGIDVPVMNLGL--GVERLAMISGNFADVREM 304 (309)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEEEEBCHHHH-HHTTCCSCEEEEEE--EHHHHHHHHTTCSCHHHH
T ss_pred CCEEEEEEEEECCCCEEEEEECCCCCCHHHH-HHCCCCCCEEEEEE--CHHHHHHHHHCCCHHHHH
T ss_conf 9604799999587994999937737789999-86697987799874--499999997099756653
No 33
>>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* (A:36-70,A:195-348)
Probab=39.00 E-value=26 Score=15.67 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=78.1
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCEEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 7898744834401676415578876554-6677500114444557-5798335899999999981999621717988328
Q gi|254780757|r 47 STTLRALGPLSWKAAYVQPSRRPLDGRY-AENPNRLQHYYQFQVI-IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDN 124 (307)
Q Consensus 47 ~T~lr~lg~~pw~~aYvqPsrRP~DgRY-GeNPNRlq~y~QfQVi-lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDn 124 (307)
.-.+.+-|++|.++==+-.+.|+..+.. -.||..-+. -.-+. -+=.-.+++.+--..|..+++.......+=.+.+
T Consensus 36 lk~n~~~~~~~vriFEIGrVFrne~~~d~~h~pEft~l--e~y~a~~~~df~dlkg~le~ll~~~~~~~~~~~~~~~~~~ 113 (189)
T 2du3_A 36 LSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSA--SCVLVDEELSVDDGKAVAEALLRQFGFENFRFRKDEKRSK 113 (189)
T ss_dssp HHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEE--EEEEECSSCCHHHHHHHHHHHHGGGTCCEEEEEECTTCCT
T ss_pred HHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCEEEEE--EEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 99997178998589604501103565665425556672--2698579998999999999999997798757986788799
Q ss_pred CCCCHHHH---------------CCCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 88700110---------------123217688787414777899866825775145678789999999869982113320
Q gi|254780757|r 125 WESPTLGA---------------WGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307)
Q Consensus 125 WEsPtLGA---------------wGlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307)
+-.|.-.| +..+|+.-.---++..-- ..--|++-... -.-.+||||+|...+.++|-+++|
T Consensus 114 ~~~Pgr~a~i~~~~~~~~G~~~~~~~~~~eig~~G~i~p~v--l~~~gi~~~v~--~fel~Le~L~~~k~~i~DIR~f~~ 189 (189)
T 2du3_A 114 YYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTA--LAEYDIPYPVM--NLGLGVERLAMILYGYDDVRKMVY 189 (189)
T ss_dssp TBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHH--HHTTTCCSCEE--EEEEEHHHHHHHHTTCSCHHHHHC
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHH--HHHCCCCCCEE--EEEECHHHHHHHHCCCCHHHHHHC
T ss_conf 99996205999850587655547689659995574788799--97469798679--987638899999739966777516
No 34
>>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC24; division cycle-associated protein...; HEC1, NDC80, nucleus, mitosis, centromere, cell cycle; 2.88A {Homo sapiens} (C:1-141)
Probab=38.83 E-value=20 Score=16.62 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=26.4
Q ss_pred EC-CCCHHHHHHHHHHHHHC-CCCCCCCCEEEEECCCCCCHHHHCCC
Q ss_conf 57-98335899999999981-99962171798832888700110123
Q gi|254780757|r 91 IK-PNPLNLQNLYIESLKAV-GIDPLIHDVRFVEDNWESPTLGAWGL 135 (307)
Q Consensus 91 lK-Psp~niq~lYl~SL~~i-Gid~~~hDIrFveDnWEsPtLGAwGl 135 (307)
+| |.|+-+|.+|-.=|+.+ |+++...-..-.-.+=|.|.+-.-.+
T Consensus 42 ~k~P~pe~v~~iy~~~l~~~~g~~~e~~~~~~~~~~l~~pe~~~~si 88 (141)
T 2ve7_C 42 YPNPKPEVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFL 88 (141)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTH
T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 45989799999999999999696987841577873368767899899
No 35
>>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A {Thermoproteus} (X:127-216)
Probab=36.39 E-value=29 Score=15.39 Aligned_cols=50 Identities=28% Similarity=0.477 Sum_probs=42.8
Q ss_pred CEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEE
Q ss_conf 11444455757983358999999999819996217179883288870011012321768878741
Q gi|254780757|r 82 QHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEI 146 (307)
Q Consensus 82 q~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEI 146 (307)
-.||-..|-||.-.....+--++.|+++||....-|- -=|+||-.||.|-
T Consensus 13 rtY~YiRiGlKTKSk~LRDWiaq~L~~~GIRA~~ADK---------------kDGYEvHID~~eA 62 (90)
T 2dch_X 13 KSYYYIRIGIKTKSKELRDWIAQTLNDLGIRASRADK---------------SDGYEVHIDGVEA 62 (90)
T ss_dssp EEEEEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE---------------TTEEEEEEETHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEC---------------CCCEEEEEEECCH
T ss_conf 4323443256547199999999999975983486405---------------7857999980518
No 36
>>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* (A:42-340,A:446-692)
Probab=35.98 E-value=21 Score=16.42 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=35.1
Q ss_pred CCCCCCC-----CCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHC
Q ss_conf 1999621-----71798832888700110123217688787414777899866
Q gi|254780757|r 109 VGIDPLI-----HDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVC 156 (307)
Q Consensus 109 iGid~~~-----hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvG 156 (307)
+|+.|.. .-+||----=.|++=+.-..||-|=.--||| |+|=|.-..
T Consensus 288 ~g~~pl~~~~~~QtvRFKPPp~~s~p~~~~~iGWRVEFRpmEi-QlTDFENAA 339 (546)
T 3ig5_A 288 RGVAPLLPKYNKQTLRFKPPTQQATPDKKDSPGWRVEFRPFEV-QLLDFENAA 339 (546)
T ss_dssp TTSCCSSTTTSGCSEEEECCCTTCCTTCTTSCCEEEEECCCBC-CSSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCHHHHHH
T ss_conf 2766565422333001168986677777789885456535552-366366779
No 37
>>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomics, protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} (A:1-88,A:248-352)
Probab=35.13 E-value=17 Score=17.03 Aligned_cols=46 Identities=24% Similarity=0.142 Sum_probs=37.1
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf 7579833589999999998199962171798832888700110123217688
Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307)
Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307)
.-||+|. +|+.-++.+|+++. ++-+|.||.++--.||...||...+
T Consensus 112 ~~KP~p~----~~~~a~~~~~v~~~--~~i~vgDd~~~Di~~A~~aG~~til 157 (193)
T 3kc2_A 112 GQSVKQK----LPLLGTKPSTSPFH--AVFXVGDNPASDIIGAQNYGWNSCL 157 (193)
T ss_dssp ----------------CCTTTTTSS--EEEEEESCTTTHHHHHHHHTCEEEE
T ss_pred CCCCCCC----CHHHCCCCCCCCCC--EEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf 2221000----00110123578855--3899758818999999986998899
No 38
>>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264)
Probab=34.83 E-value=25 Score=15.82 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHCCCCCCEEEEECC-CCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 7898744834401676415-578876554667750011444455757983358999999999819996217179883288
Q gi|254780757|r 47 STTLRALGPLSWKAAYVQP-SRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNW 125 (307)
Q Consensus 47 ~T~lr~lg~~pw~~aYvqP-srRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnW 125 (307)
..+++.|-.+-++++.+-. |.|+.+. +-+--.+|.--..++-++||.|+ +|..-++.+|++|. .+-||.|+=
T Consensus 27 ~e~l~~l~~~G~~~~i~Tn~s~~~~~~-~~~~l~~lgi~~~~~~~~~~~p~----~~~~~~~~~~~~~~--~~~~VgD~~ 99 (154)
T 3epr_A 27 ERFIERLQEKGIPYMLVTNNTTRTPES-VQEMLRGFNVETPLETIYTANAI----IMNKALEILNIPRN--QAVMVGDNY 99 (154)
T ss_dssp HHHHHHHHHHTCCEEEEECCCSSCHHH-HHHHHHTTTCCCCGGGEEEHSHH----HHHHHHHHHTSCGG--GEEEEESCT
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHHCCCCCCHHHCCCHCHH----HHHHHHHHHCCCCC--CEEEEECCC
T ss_conf 999999998799889993899999999-99987531655431210235205----66655565326866--089997995
Q ss_pred CCCHHHHCCCCEE-EEEC
Q ss_conf 8700110123217-6887
Q gi|254780757|r 126 ESPTLGAWGLGWE-CWCD 142 (307)
Q Consensus 126 EsPtLGAwGlGWE-vwld 142 (307)
+.-..||--.|+. ||+.
T Consensus 100 ~~Di~~A~~aG~~~v~v~ 117 (154)
T 3epr_A 100 LTDIMAGINNDIDTLLVT 117 (154)
T ss_dssp TTHHHHHHHHTCEEEEET
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 799999998799899989
No 39
>>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:)
Probab=33.58 E-value=20 Score=16.59 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=22.0
Q ss_pred CCCCC-CCCHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 43332-24857898744834401676415578
Q gi|254780757|r 38 EVGAG-TFHPSTTLRALGPLSWKAAYVQPSRR 68 (307)
Q Consensus 38 e~GAg-T~hp~T~lr~lg~~pw~~aYvqPsrR 68 (307)
+-|.| |..|.-.-|+|+|+.|+.. .+|.||
T Consensus 18 ~R~~~kticPsevARal~~~~Wr~l-m~~VR~ 48 (85)
T 2ns0_A 18 ARADSASICPSDVARAVAPDDWRPL-XEPVRE 48 (85)
T ss_dssp HSCTTCCBCHHHHHHHHCTTSCGGG-HHHHHH
T ss_pred HCCCCCCCCHHHHHHHHCCHHHHHH-HHHHHH
T ss_conf 6499897598999988684606887-299999
No 40
>>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} (A:102-212)
Probab=33.24 E-value=19 Score=16.71 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999985006
Q gi|254780757|r 226 HFIDSEKECLDLLKKGI 242 (307)
Q Consensus 226 ~F~~yE~Ea~rLle~~L 242 (307)
+|+.|.+-+.+|+++++
T Consensus 1 ~Fe~Y~~~a~~Li~~G~ 17 (111)
T 1qtq_A 1 YFDQLHAYAIELINKGL 17 (111)
T ss_dssp GHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 69999999999987799
No 41
>>2qsd_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, nysgrc; 2.50A {Idiomarina loihiensis} (A:1-63,A:167-187)
Probab=31.56 E-value=21 Score=16.44 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=11.7
Q ss_pred CCCCCCCCCEEEEEC
Q ss_conf 199962171798832
Q gi|254780757|r 109 VGIDPLIHDVRFVED 123 (307)
Q Consensus 109 iGid~~~hDIrFveD 123 (307)
-|-+...||||||--
T Consensus 20 ~g~nIE~HDV~Fvvg 34 (84)
T 2qsd_A 20 PGANIELHDIRFVVG 34 (84)
T ss_dssp TTCSSCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEC
T ss_conf 898416703799973
No 42
>>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A (A:1-17,A:105-238)
Probab=31.28 E-value=35 Score=14.83 Aligned_cols=46 Identities=15% Similarity=0.390 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHCC-CCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf 7983358999999999819-9962171798832888700110123217-68878
Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVG-IDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307)
Q Consensus 92 KPsp~niq~lYl~SL~~iG-id~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307)
||.| +.|+.-++.++ +++ .++-||.|+=++-..+|...||- ||++.
T Consensus 71 kp~p----~~~~~~~~~~~~~~~--~~~i~VgD~~~~Di~~A~~aG~~~v~v~~ 118 (151)
T 3ed5_A 71 KPXK----EYFNYVFERIPQFSA--EHTLIIGDSLTADIKGGQLAGLDTCWXNP 118 (151)
T ss_dssp TTCH----HHHHHHHHTSTTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEECT
T ss_pred CCCH----HHHHHHHHHHHCCCC--HHHEEECCCHHHHHHHHHHCCCEEEEECC
T ss_conf 1100----235899998641373--33200047808889999993997999889
No 43
>>2q9r_A Protein of unknown function; YP_001051499.1, DUF, structural genomics, joint center for structural genomics, JCSG; 1.91A {Shewanella baltica OS155} (A:)
Probab=30.09 E-value=36 Score=14.69 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=43.1
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 85006653233553013828999999999878883875017889999999999999999999854516
Q gi|254780757|r 238 LKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG 305 (307)
Q Consensus 238 le~~LP~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~ 305 (307)
++...|...+-...-|+||.|-|.--|-+++.+..+.. |. +..|-.++...-..|++.+++
T Consensus 77 lE~~iPd~~d~d~yGvyPA~DAc~aL~~lL~~~~~~~~----e~---a~~iS~lS~~TVa~~ie~q~~ 137 (200)
T 2q9r_A 77 LEDNTPEPADFEAYGVYPAXDAVVAISTLLGAIQGKIE----ED---IVNISKLSSSTVANYIEAISD 137 (200)
T ss_dssp HHHTCCCGGGCCSTTHHHHHHHHHHHHHHHHHHHHTCH----HH---HHTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCHHCCHHCCHHHHHHHHHHHHHHHHHHCCCH----HH---HHHHHHHHHHHHHHHHHHHCC
T ss_conf 98729991210040654899999999999998766898----99---999999999999999997546
No 44
>>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:108-421)
Probab=29.98 E-value=4.2 Score=21.50 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=69.5
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCC---CCCEEEEEE--EEECCCCHHHH----HHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 4483440167641557887655466775---001144445--57579833589----99999999819996217179883
Q gi|254780757|r 52 ALGPLSWKAAYVQPSRRPLDGRYAENPN---RLQHYYQFQ--VIIKPNPLNLQ----NLYIESLKAVGIDPLIHDVRFVE 122 (307)
Q Consensus 52 ~lg~~pw~~aYvqPsrRP~DgRYGeNPN---Rlq~y~QfQ--VilKPsp~niq----~lYl~SL~~iGid~~~hDIrFve 122 (307)
+-++-|.+++++.++.|-.-+-.|...+ |+.+++|.. ++..|+++..- .+.......++ ....++|++.
T Consensus 133 s~~~lP~~~~q~g~~fR~E~~~~g~~~~gl~R~REF~q~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 210 (314)
T 1ses_A 133 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILR--LLELPYRLVE 210 (314)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred HHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH--HCCCCCHHHH
T ss_conf 46535732577447532223344521034433102455777786145430246799999999999986--2267311022
Q ss_pred CCCCC-CHHHHCCCCEEEEEC-------CEEEHH----------HHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 28887-001101232176887-------874147----------778998668257751456787899999998
Q gi|254780757|r 123 DNWES-PTLGAWGLGWECWCD-------GMEISQ----------FTYFQQVCGIECSPISGEITYGLERLAMYV 178 (307)
Q Consensus 123 DnWEs-PtLGAwGlGWEvwld-------GMEItQ----------FTYFQQvGGi~c~pv~~EiTYGLERiaMyl 178 (307)
-+... ..-.++....|+|.. ..-..+ ++|..+-+-.++.++..+...|.||+.-.|
T Consensus 211 ~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~l 284 (314)
T 1ses_A 211 VATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAML 284 (314)
T ss_dssp CCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHH
T ss_pred CCCCCCCHHHHHHCCEEEEECCCCCEEEEEEECCCCHHHHHHCCCEEECCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 27556775876321407886488967878212020038887615878889998786687247603788999999
No 45
>>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} (A:1-80,A:201-360)
Probab=29.72 E-value=37 Score=14.65 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=76.7
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHH---HHHHHHHHHCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 8344016764155788765546677500114444557579833589---9999999981999621717988328887001
Q gi|254780757|r 54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQ---NLYIESLKAVGIDPLIHDVRFVEDNWESPTL 130 (307)
Q Consensus 54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq---~lYl~SL~~iGid~~~hDIrFveDnWEsPtL 130 (307)
...|.+.=-+-.+.|+..+.. .-.+-.++|...+.+-.+.++- .+.-.-|+.+||....-..+=-...|=.|+.
T Consensus 94 ~~~p~klFEigrVf~~d~~~d---~t~~~~~~~~~~~~~~~~~~f~dlKg~le~ll~~lgi~~~~~~~~~~~~p~~hPgr 170 (240)
T 2du7_A 94 RKLPLKLFSIDRCFRREQRED---RSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPET 170 (240)
T ss_dssp SCSSEEEEEEEEECCCCSSCS---SSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTCCCCCCEECTTCCTTBCTTT
T ss_pred CCCCEEEECCCCCCCCCCCCC---HHHCCCCHHHCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCE
T ss_conf 799826755654345665541---33065312100177407878999999999999997788837987788889999965
Q ss_pred HHC-------CCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 101-------2321768878741477789986682577514567878999999986998211332
Q gi|254780757|r 131 GAW-------GLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIV 188 (307)
Q Consensus 131 GAw-------GlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~ 188 (307)
.|- +.||.+.-.-=++..- ...--||+......|| +||||+|...++.++-++.
T Consensus 171 ~aeI~~~~~~~~g~~~iG~~G~lhP~--il~~~gi~~~V~~~EL--~le~L~~~~~~~~~~r~l~ 231 (240)
T 2du7_A 171 QTEVYAYHPKLGEWIEVATFGVYSPI--ALAKYNIDVPVMNLGL--GVERLAMIIYGYEDVRAMV 231 (240)
T ss_dssp CEEEEECCSSSSCSEEEEEEEEBCHH--HHHHTTCCSCEEEEEE--BHHHHHHHHTTCSCSHHHH
T ss_pred EEEEEEECCCCCEEEEEECCCCCCHH--HHHHCCCCCCEEEEEE--CHHHHHHHHCCCCHHHHHH
T ss_conf 78999980889818999578477889--9986698988789885--4899999971997677752
No 46
>>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} (A:1-204)
Probab=29.25 E-value=27 Score=15.65 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=44.5
Q ss_pred CCCEEEEEEEEE------CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf 001144445575------79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r 80 RLQHYYQFQVII------KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307)
Q Consensus 80 Rlq~y~QfQVil------KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307)
+|..++.+-++. ||.|+...++|+.-++.+|++|. ++-||+|+ .+--.+|--.|+. ||+.
T Consensus 102 ~l~~~~~~~~~~~~~~~~kp~p~~~~~~~~~~~~~l~~~p~--~~~~VgD~-~~Di~~A~~aG~~~i~v~ 168 (204)
T 1yj5_A 102 KLGVPFQVLVATHAGLNRKPVSGXWDHLQEQANEGIPISVE--DSVFVGDA-AGRLANWAPGRKKKDFSC 168 (204)
T ss_dssp HHTSCCEEEEECSSSSSSTTSTHHHHHHHHTSSSSCCCCGG--GCEEECSC-CCBCTTSBTTBCSCCSCC
T ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC--CEEEECCC-CCCCCCCCCCCCCCCCCC
T ss_conf 77997089987888888999348999999973757642313--13897345-676554333444332236
No 47
>>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:114-455)
Probab=28.27 E-value=39 Score=14.48 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=47.0
Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCC---CCCEEEEEEEEECCCCHH-------HHHHHHHHHHHCCCCCCC
Q ss_conf 4483440167641557887655466775---001144445575798335-------899999999981999621
Q gi|254780757|r 52 ALGPLSWKAAYVQPSRRPLDGRYAENPN---RLQHYYQFQVIIKPNPLN-------LQNLYIESLKAVGIDPLI 115 (307)
Q Consensus 52 ~lg~~pw~~aYvqPsrRP~DgRYGeNPN---Rlq~y~QfQVilKPsp~n-------iq~lYl~SL~~iGid~~~ 115 (307)
+-..-|-+.++..+|.|..-+-+|..++ |+.++.|....+==+|+. ..++|..-++.+|+....
T Consensus 154 s~~~lPl~~~~~~~~fR~E~~~~g~~~~Gl~R~ref~q~~~~~f~~~e~~~~~~~~~l~~~~~~~~~lg~~~~~ 227 (342)
T 2dq0_A 154 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRV 227 (342)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 68668964456589987343136875367887765522000231488611999999999999999976996379
No 48
>>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} (A:1-12,A:99-220)
Probab=28.23 E-value=37 Score=14.60 Aligned_cols=44 Identities=30% Similarity=0.262 Sum_probs=33.2
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE-EEC
Q ss_conf 75798335899999999981999621717988328887001101232176-887
Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC-WCD 142 (307)
Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv-wld 142 (307)
..||+|.-.+ .-++..| .+.-||.|+..+--.+|.-.||.+ |++
T Consensus 62 ~~KP~~~~~~----~al~~~~-----~~~l~vgD~~~~Di~~A~~aG~~~i~v~ 106 (134)
T 2zg6_A 62 AVKPNPKIFG----FALAKVG-----YPAVHVGDIYELDYIGAKRSYVDPILLD 106 (134)
T ss_dssp -----CCHHH----HHHHHHC-----SSEEEEESSCCCCCCCSSSCSEEEEEBC
T ss_pred CCCCHHHHHH----HHHHHHC-----CCCCEECCCCHHHHHHHHHCCCEEEEEC
T ss_conf 2685178999----9999919-----9663405772868999998599899989
No 49
>>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271)
Probab=26.67 E-value=41 Score=14.28 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCE-------EEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf 8335899999999981999621717-------98832888700110123217-6887
Q gi|254780757|r 94 NPLNLQNLYIESLKAVGIDPLIHDV-------RFVEDNWESPTLGAWGLGWE-CWCD 142 (307)
Q Consensus 94 sp~niq~lYl~SL~~iGid~~~hDI-------rFveDnWEsPtLGAwGlGWE-vwld 142 (307)
.|...++-+.+.|+..||+....+| -+|.|+.++-..||-..|+- ||.+
T Consensus 58 ~~~~~~~~~~~~l~~~gi~~~~d~i~~sp~~~i~VGDs~~~Di~~A~~aG~~ti~v~ 114 (145)
T 1vjr_A 58 NSSLGAQDYVRKLRNXGVDVPDDAVVTSKERXAXVGDRLYTDVKLGKNAGIVSILVL 114 (145)
T ss_dssp CTTSCHHHHHHHHHHTTCCCCGGGEEEHGGGEEEEESCHHHHHHHHHHHTCEEEEES
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEECCHCHHCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 998999999999985155665232345811035117781789999998799499989
No 50
>>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} (A:142-251)
Probab=26.55 E-value=29 Score=15.37 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999985006
Q gi|254780757|r 226 HFIDSEKECLDLLKKGI 242 (307)
Q Consensus 226 ~F~~yE~Ea~rLle~~L 242 (307)
+|+.|.+-+.+|+++|+
T Consensus 1 ~fe~Y~~~~~~L~~~G~ 17 (110)
T 2hz7_A 1 YFDRYYAYAEQLIRQGD 17 (110)
T ss_dssp GHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 79999999999998699
No 51
>>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (B:1-362)
Probab=26.06 E-value=42 Score=14.20 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=90.2
Q ss_pred EEECCCCCCCCC-CCCHHHHHHH------CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH---
Q ss_conf 961167543332-2485789874------483440167641557887655466775001144445575798335899---
Q gi|254780757|r 31 ILQPYDMEVGAG-TFHPSTTLRA------LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN--- 100 (307)
Q Consensus 31 i~qpyd~e~GAg-T~hp~T~lr~------lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~--- 100 (307)
+..|..-|.-+= ++.-...+++ -+..|.+..++-.+.|+...- .--+...++|.-+..+..+.+.-+
T Consensus 191 ~~np~~~e~~~LR~sl~p~ll~~~~~n~~~~~~p~rlFEiG~vfr~e~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (362)
T 2odr_B 191 KDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKE---DKSHLMTYHSASCAIAGEGVDINDGKA 267 (362)
T ss_dssp CCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCC---CSSCCSEEEEEEEEEECTTCCHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCEECCCCCC---CCCCCCCCEEEEEEEEECCCCHHHHHH
T ss_conf 44301255512551577238999999985799982798056124588755---353287564788999938998999999
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHC-------CCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999999981999621717988328887001101-------2321768878741477789986682577514567878999
Q gi|254780757|r 101 LYIESLKAVGIDPLIHDVRFVEDNWESPTLGAW-------GLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLER 173 (307)
Q Consensus 101 lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAw-------GlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLER 173 (307)
+--.-++.+|+......++-.+..+-.|...|- .-||.++..--++.+ -...--|++-.....|| ||||
T Consensus 268 ~~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~a~i~~~~~~~g~~~~~~~~g~i~p--~il~~~~i~~~v~~~el--~l~~ 343 (362)
T 2odr_B 268 IAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSP--VALSKYGIDVPVMNLGL--GVER 343 (362)
T ss_dssp HHHHHHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCH--HHHHHTTCCSCEEEEEE--EHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCH--HHHHHCCCCCCEEEEEE--CHHH
T ss_conf 9999999976877089857777899999603799999488984899957736788--99986698987799875--4899
Q ss_pred HHHHHCCCCCEEE
Q ss_conf 9999869982113
Q gi|254780757|r 174 LAMYVQNVNSVYD 186 (307)
Q Consensus 174 iaMylQ~vdnvyD 186 (307)
|+|...+++.+-+
T Consensus 344 l~~~~~~~~dir~ 356 (362)
T 2odr_B 344 LAMISGNFADVRE 356 (362)
T ss_dssp HHHHHTTCSCHHH
T ss_pred HHHHHCCCCHHHH
T ss_conf 9999719965766
No 52
>>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306)
Probab=24.60 E-value=45 Score=14.02 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCC---------CCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf 983358999999999819996---------2171798832888700110123217-68878
Q gi|254780757|r 93 PNPLNLQNLYIESLKAVGIDP---------LIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307)
Q Consensus 93 Psp~niq~lYl~SL~~iGid~---------~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307)
-+|...++.+.+-|+.+|++. +-+++-+|+|+..+--.||.-.|+. ||.+.
T Consensus 61 n~~~~~~~~~~~~L~~~Gl~~~fd~ii~s~~p~~~l~VGDs~~~Di~~a~~aG~~ti~v~~ 121 (166)
T 2oyc_A 61 NNSRRARPELALRFARLGFGGLRAEQLFSSDPARTLXVGDRLETDILFGHRCGXTTVLTLT 121 (166)
T ss_dssp CCCSSCHHHHHHHHHHTTCCSCCGGGEEEHCGGGEEEEESCTTTHHHHHHHHTCEEEEESS
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHEEEECCCCHHHHHHHHHCCCEEEEECC
T ss_conf 8999999999999874377643211200149889788689762679999987991999899
No 53
>>1zkd_A DUF185; X-RAY, NESG, RPR58, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.10A {Rhodopseudomonas palustris CGA009} (A:28-160,A:221-387)
Probab=24.23 E-value=34 Score=14.91 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred CHHHHH-HHHHHHHHHCCCEEEEC-CCCCCCCCCCC-HHHHHHHCCCCC-----CEEEEECCCC
Q ss_conf 799999-99999998669589611-67543332248-578987448344-----0167641557
Q gi|254780757|r 12 SFQNII-LTLTQYWAQQGCTILQP-YDMEVGAGTFH-PSTTLRALGPLS-----WKAAYVQPSR 67 (307)
Q Consensus 12 ~fq~ii-~~L~~fW~~~GC~i~qp-yd~e~GAgT~h-p~T~lr~lg~~p-----w~~aYvqPsr 67 (307)
.|-++| .-+.+.|...|+- .| .=+|+||||=. -+..|+.|..-| .+..+|++|-
T Consensus 33 ~f~e~ia~~l~~~~~~~~~~--~~~~IlEiGAGtG~l~~~iL~~l~~~p~~~~~~~Y~~vEiSp 94 (300)
T 1zkd_A 33 XFGELLGLWSASVWKAADEP--QTLRLIEIGPGRGTXXADALRALRVLPILYQSLSVHLVEINP 94 (300)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred HHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99999999999999975999--771699736867789998899876523320032578633753
No 54
>>3f7c_A Protein of unknown function (DUF416); YP_958225.1, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 2.00A {Marinobacter aquaeolei VT8} (A:16-112)
Probab=24.21 E-value=46 Score=13.97 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=27.5
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 85006653233553013828999999999878883
Q gi|254780757|r 238 LKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLLDA 272 (307)
Q Consensus 238 le~~LP~~~~~~~~lvlPAYD~~LKaSH~FNLLDA 272 (307)
+|...|...+-...-|+||.|-|.--|.+++-+=+
T Consensus 61 lE~~iP~~~d~d~yGvyPA~DAcvaL~~ll~~~l~ 95 (97)
T 3f7c_A 61 LETLCPNVDEYDAYGVYPAFDFCQLLEQALLNRLN 95 (97)
T ss_dssp HHHHCCCGGGCCSTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98729990530140560899999999999999876
No 55
>>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} (A:495-571)
Probab=23.82 E-value=46 Score=13.92 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=27.3
Q ss_pred HCCCCCCEEEEECCCCC---CCCCCCCCCCCCCCEEE
Q ss_conf 44834401676415578---87655466775001144
Q gi|254780757|r 52 ALGPLSWKAAYVQPSRR---PLDGRYAENPNRLQHYY 85 (307)
Q Consensus 52 ~lg~~pw~~aYvqPsrR---P~DgRYGeNPNRlq~y~ 85 (307)
.+|-|-=+|.-+++... .+||.||+.+.=.|.||
T Consensus 41 ~~gREG~nV~i~~~~~~~~~~~~g~Y~~~~~IyQ~~~ 77 (77)
T 2io8_A 41 IAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLW 77 (77)
T ss_dssp TTCCTTTTCEEECTTSCEEEECCCTTTTSCEEEEECC
T ss_pred CCCCCCCCEEEECCCCCEEECCCCCCCCCCEEEEEEC
T ss_conf 7778878769972898265223677689885999833
No 56
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=21.12 E-value=52 Score=13.55 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCC-------CCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf 335899999999981999621-------71798832888700110123217-6887
Q gi|254780757|r 95 PLNLQNLYIESLKAVGIDPLI-------HDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307)
Q Consensus 95 p~niq~lYl~SL~~iGid~~~-------hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307)
+.-.++-+.+-|+.+|++... .++-+|.|+.++--.||--.|+- ||..
T Consensus 43 ~~~~~~~~~~~L~~lg~~~~~~~i~~sp~~~~~VGD~~~~Di~~A~~aG~~ti~v~ 98 (131)
T 1zjj_A 43 STKTPEMYREKLLKMGIDVSSSIIITSGEELWMVGDRLDTDIAFAKKFGMKAIMVL 98 (131)
T ss_dssp CSSCHHHHHHHHHTTTCCCCGGGEEEHTCEEEEEESCTTTHHHHHHHTTCEEEEES
T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECHCCEEEEECCCHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999997699888154751143079976881778999998799699988
No 57
>>2c6n_A Angiotensin-converting enzyme, somatic isoform; hydrolase, angiotensin-I converting enzyme, N domain, zinc metallopeptidase, metalloprotease; HET: NAG NDG LPR; 3.0A {Homo sapiens} PDB: 2c6f_A* (A:264-413)
Probab=21.03 E-value=30 Score=15.25 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=21.3
Q ss_pred HHHHHHCCCCCCEEEEECCC--CCCCCCCCCCC
Q ss_conf 78987448344016764155--78876554667
Q gi|254780757|r 47 STTLRALGPLSWKAAYVQPS--RRPLDGRYAEN 77 (307)
Q Consensus 47 ~T~lr~lg~~pw~~aYvqPs--rRP~DgRYGeN 77 (307)
.-|+++||=.|-.-.|=+-| .+|+|||=-.+
T Consensus 35 e~Ff~SlGl~~lp~~FW~~S~~~kp~d~r~v~C 67 (150)
T 2c6n_A 35 EEFFTSLELSPMPPEFWEGSMLEKPADGREVVC 67 (150)
T ss_dssp HHHHHHTTCCCCCHHHHHSCBCSCCSSCCCCCC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 999997275315589998876415544567788
No 58
>>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} (A:1-43)
Probab=20.67 E-value=41 Score=14.31 Aligned_cols=10 Identities=30% Similarity=1.295 Sum_probs=6.6
Q ss_pred EEEEECCEEE
Q ss_conf 1768878741
Q gi|254780757|r 137 WECWCDGMEI 146 (307)
Q Consensus 137 WEvwldGMEI 146 (307)
-+|||||-.|
T Consensus 33 mdVW~NG~~~ 42 (43)
T 2kd2_A 33 MDVWCNGQKM 42 (43)
T ss_dssp TEEEESSSBC
T ss_pred EEEEECCEEE
T ss_conf 4457877861
No 59
>>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (A:)
Probab=20.46 E-value=54 Score=13.46 Aligned_cols=174 Identities=15% Similarity=0.029 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCC-----CCCC--------------------------------------CCHHH-
Q ss_conf 999999999999866958961167543-----3322--------------------------------------48578-
Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQPYDMEV-----GAGT--------------------------------------FHPST- 48 (307)
Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qpyd~e~-----GAgT--------------------------------------~hp~T- 48 (307)
-+.++..+.+|..++|..-..++.+.- +|.- .++..
T Consensus 103 r~~~~~~iR~~f~~~GF~Ev~tp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~l~~s~~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCCCCCHHHHCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCHH
T ss_conf 99999999999973791350487545757778876499435646332059973776445687531001023745567487
Q ss_pred --HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf --987448344016764155788765546677500114444557579833589999999998199962171798832888
Q gi|254780757|r 49 --TLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWE 126 (307)
Q Consensus 49 --~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWE 126 (307)
-....+..+-++--+-|+.|+.++..-.+|+..+.-. ++.--+-+..+...+.-.-+..++......-.+--+.+|.
T Consensus 183 ~~~~~~~~~~~~rvFeig~vfr~e~~~~~~~~ef~~~e~-~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 261 (350)
T 1b7y_A 183 QVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEG-LVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFV 261 (350)
T ss_dssp HHHHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEE-EEEETTCCHHHHHHHHHHHHHHHSCSSCCEEEEECCBTTE
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEE-EEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 898875579983688447432579999762565605647-9987521415678899999998618885588740567100
Q ss_pred CCHHHHC------CCCEEEEECCEEEHH----HHHHHHHCC--CCCCCCHH-HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 7001101------232176887874147----778998668--25775145-6787899999998699821133
Q gi|254780757|r 127 SPTLGAW------GLGWECWCDGMEISQ----FTYFQQVCG--IECSPISG-EITYGLERLAMYVQNVNSVYDI 187 (307)
Q Consensus 127 sPtLGAw------GlGWEvwldGMEItQ----FTYFQQvGG--i~c~pv~~-EiTYGLERiaMylQ~vdnvyDl 187 (307)
.|..-+- +.+.++...|+.--+ +--...+.- +..+++.. -..+|.+|++|+.-+...+..+
T Consensus 262 ~p~~~~~~~~~~~~~~~~~~~~g~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dla~~ 335 (350)
T 1b7y_A 262 EPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYF 335 (350)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCTTCEEEEEEEEHHHHHHHHTTCCCGGGT
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHH
T ss_conf 25731899978899479983676788899864588756417885556775999852398999997399858877
No 60
>>1bcp_B Pertussis toxin; ADP-ribosyltransferase, transferase, whooping cough; HET: ATP; 2.70A {Bordetella pertussis} (B:1-34,B:80-199)
Probab=20.43 E-value=35 Score=14.77 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=39.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEE-EEECCCCCCHHHHCCCC
Q ss_conf 6415578876554667750011444455757983358999999999819996217179-88328887001101232
Q gi|254780757|r 62 YVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVR-FVEDNWESPTLGAWGLG 136 (307)
Q Consensus 62 YvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIr-FveDnWEsPtLGAwGlG 136 (307)
-|+-|-+|-+|||++--.+|-+ -|.-+..-|+..+.|--+ =--||.|-||.-+..|-
T Consensus 85 vigAC~sPy~gry~~mY~~LRr------------------~Ly~iy~~Gl~vRVhVskeeqyydyedatf~tYalT 142 (154)
T 1bcp_B 85 VIGACTSPYDGKYWSMYSRLRK------------------MLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALT 142 (154)
T ss_dssp EEEEEECSSSSTTCTTHHHHHH------------------HHHHHHHHTCCCCEEEEEEEEECCSSSCSSCEEEEE
T ss_pred EEHCCCCCCCCCHHHHHHHHHH------------------HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 0000167545622667899999------------------999999738548999765446541014775314554
No 61
>>3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD superfamily, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:1-19,A:105-234)
Probab=20.27 E-value=54 Score=13.43 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=52.2
Q ss_pred HHHHHCCCCC-CEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 8987448344-016764155788765546677500114444557-57983358999999999819996217179883288
Q gi|254780757|r 48 TTLRALGPLS-WKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI-IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNW 125 (307)
Q Consensus 48 T~lr~lg~~p-w~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi-lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnW 125 (307)
.+|+.|...+ .+++-+--+.+..=-+.-++ .-|-+|+..=++ -||.| +.|+.-++.+|++|. ++-||+|+.
T Consensus 27 e~L~~Lk~~g~~~l~ivTn~~~~~~~~~l~~-~gl~~~F~~i~~~~kp~p----~~~~~a~~~~~~~p~--e~v~VGD~~ 99 (149)
T 3ddh_A 27 ETLKTLKETGKYKLVVATKGDLLDQENKLER-SGLSPYFDHIEVXSDKTE----KEYLRLLSILQIAPS--ELLXVGNSF 99 (149)
T ss_dssp HHHHHHHHHCCCEEEEEEESCHHHHHHHHHH-HTCGGGCSEEEEESCCSH----HHHHHHHHHHTCCGG--GEEEEESCC
T ss_pred HHHHHHHHCCEEEECCCCCCCHHHHHHHHHH-HHHHCCCCCCCCCCCCCH----HHHHHHHHHCCCCCC--EEEEEEECC
T ss_conf 9998865033034203344306666556776-522000122111236887----999999987044654--058996272
Q ss_pred CCCHHHHCCCCEE-EEECC
Q ss_conf 8700110123217-68878
Q gi|254780757|r 126 ESPTLGAWGLGWE-CWCDG 143 (307)
Q Consensus 126 EsPtLGAwGlGWE-vwldG 143 (307)
++--.+|...|+- ||++-
T Consensus 100 ~~Di~aA~~aG~~~i~v~~ 118 (149)
T 3ddh_A 100 KSDIQPVLSLGGYGVHIPF 118 (149)
T ss_dssp CCCCHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHCCCEEEEECC
T ss_conf 7789999980998999888
No 62
>>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:1-76,A:174-347)
Probab=20.01 E-value=52 Score=13.56 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=17.5
Q ss_pred HHHHCCCEEEECCCCCCCCCCCCHHHH
Q ss_conf 998669589611675433322485789
Q gi|254780757|r 23 YWAQQGCTILQPYDMEVGAGTFHPSTT 49 (307)
Q Consensus 23 fW~~~GC~i~qpyd~e~GAgT~hp~T~ 49 (307)
-..++|+.+. +..+.||+|||.|-..
T Consensus 101 ~l~~kGv~~~-~iTLHvG~gTF~pv~~ 126 (250)
T 1vky_A 101 KLKKKGVQFA-EVVLHVGIGTFRPVKV 126 (250)
T ss_dssp HHHHHTCEEE-EEEEEC----------
T ss_pred HHHHCCCCEE-EEEEEECCCCCCCCCC
T ss_conf 9998499268-8999973555657655
Done!