HHsearch results for GI: 254780757 and protein with PDBid: 2du7_A
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=90.58 E-value=1.1 Score=24.68 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=76.9
Q ss_pred HHHHC---CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH---HHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 98744---83440167641557887655466775001144445575798335899---9999999819996217179883
Q gi|254780757|r 49 TLRAL---GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN---LYIESLKAVGIDPLIHDVRFVE 122 (307)
Q Consensus 49 ~lr~l---g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~---lYl~SL~~iGid~~~hDIrFve 122 (307)
.++.+ .+.|.++..+..|.|...- +.+-.+-.+||.-.++--.--++.+ ..-.-++.+|... -.+|+++
T Consensus 206 ~l~~l~e~~~~Pir~~s~GrVyRrD~i---~D~tH~~~FhQ~Eglvvd~~vt~~dLK~~L~~f~~~~~~~~--~k~R~~~ 280 (549)
T 2du7_A 206 TLSSLIKKRKLPLKLFSIDRCFRREQR---EDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTK--FKFKPDE 280 (549)
T ss_dssp HHHTTTTTSCSSEEEEEEEEECCCCSS---CSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTCCC--CCCEECT
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCC---CCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC--CEEEECC
T ss_conf 999998527998056336654445555---64211787737776896078789999999999999977988--3898788
Q ss_pred CC--CCCCHHH--H-----CCCCE-EEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 28--8870011--0-----12321-7688787414777899866825775145678789999999869982113320688
Q gi|254780757|r 123 DN--WESPTLG--A-----WGLGW-ECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNAI 192 (307)
Q Consensus 123 Dn--WEsPtLG--A-----wGlGW-EvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~~ 192 (307)
+- |-.|+.- . |+=+| ||-=-|| |.+ ..+ .-.||+.. ..-.--|||||||-+-++++|-+|...+.
T Consensus 281 syFPfTePs~EveV~~~~~~~g~WlEIlGcGm-v~P-~VL-~~~Gid~~--g~AfGlGlERLAMl~ygI~DIR~Ly~p~~ 355 (549)
T 2du7_A 281 KKSKYYTPETQTEVYAYHPKLGEWIEVATFGV-YSP-IAL-AKYNIDVP--VMNLGLGVERLAMIIYGYEDVRAMVYPQF 355 (549)
T ss_dssp TCCTTBCTTTCEEEEECCSSSSCSEEEEEEEE-BCH-HHH-HHTTCCSC--EEEEEEBHHHHHHHHTTCSCSHHHHSSSS
T ss_pred CCCCCCCCCEEEEEEEEECCCCEEEEEECCCC-CCH-HHH-HHCCCCCC--EEEEEECHHHHHHHHCCCCHHHHHHCCCC
T ss_conf 88899999657899997088981899957847-788-999-85697987--68987639999999729976776416755