Query         gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 307
No_of_seqs    141 out of 623
Neff          3.4 
Searched_HMMs 23785
Date          Mon May 30 13:35:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780757.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1j5w_A Glycyl-tRNA synthetase  100.0       0       0 1221.6  22.5  290    4-307     6-296 (298)
  2 2ztg_A Alanyl-tRNA synthetase;  98.8 3.7E-08 1.5E-12   78.7  10.9  265    8-287    57-367 (739)
  3 2zze_A Alanyl-tRNA synthetase;  98.6 1.4E-06 5.7E-11   67.4  12.1  177    7-190    53-272 (752)
  4 1yfs_A Alanyl-tRNA synthetase;  98.2 2.4E-06   1E-10   65.6   7.0  173   10-188     2-240 (465)
  5 3hy0_A Alanyl-tRNA synthetase;  98.1 3.1E-05 1.3E-09   57.6  10.6  167   10-187     1-256 (441)
  6 3dsq_A Pyrrolysyl-tRNA synthet  94.7     0.3 1.2E-05   28.7  13.2  167   12-190    72-276 (288)
  7 2zin_A Pyrrolysyl-tRNA synthet  93.5     0.5 2.1E-05   27.0  10.6  159   13-187    80-277 (291)
  8 3ib6_A Uncharacterized protein  93.3    0.18 7.4E-06   30.4   5.9   47   91-143    96-143 (189)
  9 3l4g_A Phenylalanyl-tRNA synth  91.2   0.046 1.9E-06   34.6   0.8  123   56-191   346-481 (508)
 10 2du7_A O-phosphoseryl-tRNA syn  90.6     1.1 4.5E-05   24.7   7.9  134   49-192   206-355 (549)
 11 3k1z_A Haloacid dehalogenase-l  88.9     0.6 2.5E-05   26.5   5.0   91   48-146   113-210 (263)
 12 1qq5_A Protein (L-2-haloacid d  88.4    0.33 1.4E-05   28.3   3.4   44   92-142   147-191 (253)
 13 2om6_A Probable phosphoserine   86.7    0.94   4E-05   25.1   4.9   46   91-142   157-203 (235)
 14 2gfh_A Haloacid dehalogenase-l  85.5    0.94 3.9E-05   25.1   4.4   48   90-143   174-223 (260)
 15 3i7f_A Aspartyl-tRNA synthetas  85.1    0.41 1.7E-05   27.7   2.4  174   15-189   249-538 (548)
 16 1n9w_A Aspartyl-tRNA synthetas  84.5    0.49 2.1E-05   27.1   2.6   55  133-188   333-411 (422)
 17 1x42_A Hypothetical protein PH  83.9     1.7   7E-05   23.3   5.1   47   91-143   154-201 (232)
 18 3pdw_A Uncharacterized hydrola  83.1     1.6 6.9E-05   23.3   4.8   51   86-142   177-228 (266)
 19 2oyc_A PLP phosphatase, pyrido  83.1     1.7 7.1E-05   23.2   4.8   46   90-141   213-258 (306)
 20 1c0a_A Aspartyl tRNA synthetas  82.9     0.4 1.7E-05   27.7   1.6   59  131-189   468-553 (585)
 21 1e1o_A Lysyl-tRNA synthetase;   82.7    0.24   1E-05   29.3   0.4   57  133-189   409-496 (504)
 22 1ses_A Seryl-tRNA synthetase;   82.7     1.5 6.4E-05   23.5   4.5   86   56-148   244-348 (421)
 23 2rhq_A Phenylalanyl-tRNA synth  82.0     2.9 0.00012   21.5   6.9  169   12-190    54-277 (294)
 24 3ed5_A YFNB; APC60080, bacillu  81.9     1.8 7.7E-05   23.0   4.7   88   47-142   109-204 (238)
 25 2pke_A Haloacid delahogenase-l  81.6     2.5 0.00011   22.0   5.3   53   83-141   152-205 (251)
 26 2no4_A (S)-2-haloacid dehaloge  81.5       1 4.4E-05   24.7   3.3   46   91-143   160-206 (240)
 27 1zrn_A L-2-haloacid dehalogena  80.7    0.96   4E-05   25.0   2.9   45   91-142   150-195 (232)
 28 1yv9_A Hydrolase, haloacid deh  80.5       2 8.2E-05   22.8   4.4   44   92-141   183-226 (264)
 29 1l0w_A Aspartyl-tRNA synthetas  79.4     3.6 0.00015   20.9   6.3   58  132-189   463-547 (580)
 30 1wyd_A Hypothetical aspartyl-t  79.1       1 4.3E-05   24.8   2.6   65   15-79    139-222 (429)
 31 3ddh_A Putative haloacid dehal  79.1       2 8.4E-05   22.7   4.1   50   87-142   152-202 (234)
 32 2odr_B Phosphoseryl-tRNA synth  77.1     4.1 0.00017   20.4   5.7  125   53-189   220-359 (648)
 33 3epr_A Hydrolase, haloacid deh  76.4     2.9 0.00012   21.5   4.3   48   88-141   178-226 (264)
 34 3i28_A Epoxide hydrolase 2; ar  74.7     1.7 7.2E-05   23.2   2.7   87   48-141   107-202 (555)
 35 2g80_A Protein UTR4; YEL038W,   74.2     2.7 0.00011   21.7   3.7   44   92-142   187-231 (253)
 36 2b0c_A Putative phosphatase; a  73.1     5.2 0.00022   19.7   4.9   89   48-143    98-193 (206)
 37 3lss_A Seryl-tRNA synthetase;   72.3     5.4 0.00023   19.6   5.4  132   16-154   214-401 (484)
 38 2c4n_A Protein NAGD; nucleotid  69.5     4.8  0.0002   20.0   4.0   48   88-141   172-220 (250)
 39 2du3_A O-phosphoseryl-tRNA syn  69.1     1.4 5.9E-05   23.8   1.2  142   54-208   202-366 (534)
 40 1yns_A E-1 enzyme; hydrolase f  68.4     4.1 0.00017   20.4   3.5   88   47-142   136-231 (261)
 41 3a74_A Lysyl-tRNA synthetase;   68.2    0.54 2.3E-05   26.8  -1.0   72   15-90    179-271 (493)
 42 3m9l_A Hydrolase, haloacid deh  67.6     4.5 0.00019   20.2   3.6   45   91-142   126-171 (205)
 43 3e58_A Putative beta-phosphogl  65.7     5.3 0.00022   19.6   3.6   45   91-142   144-188 (214)
 44 2i6x_A Hydrolase, haloacid deh  65.3     3.6 0.00015   20.9   2.7   45   91-142   149-194 (211)
 45 2zg6_A Putative uncharacterize  64.8       6 0.00025   19.3   3.8   44   90-142   148-192 (220)
 46 1nnh_A Asparaginyl-tRNA synthe  64.6    0.76 3.2E-05   25.8  -0.9   57   14-70     19-101 (294)
 47 3cnh_A Hydrolase family protei  64.2     5.2 0.00022   19.7   3.4   44   91-141   140-183 (200)
 48 2pr7_A Haloacid dehalogenase/e  64.0     4.6 0.00019   20.1   3.0   88   49-144    26-120 (137)
 49 3bju_A Lysyl-tRNA synthetase;   63.5    0.97 4.1E-05   25.0  -0.5   58  132-189   413-501 (521)
 50 1cja_A Protein (actin-fragmin   63.3       8 0.00034   18.3   4.2   38   88-128    93-130 (342)
 51 3a5y_A GENX, putative lysyl-tR  63.1    0.81 3.4E-05   25.5  -0.9   71   14-89     40-137 (345)
 52 3kzx_A HAD-superfamily hydrola  61.9     7.4 0.00031   18.6   3.8   44   91-140   158-201 (231)
 53 2w43_A Hypothetical 2-haloalka  61.6     4.8  0.0002   19.9   2.8   45   90-143   126-171 (201)
 54 1eov_A ASPRS, aspartyl-tRNA sy  60.9     1.1 4.8E-05   24.5  -0.5   60   15-74    183-261 (487)
 55 1b7y_A Phers, protein (phenyla  60.7     2.3 9.6E-05   22.3   1.0  129   54-190   190-338 (350)
 56 2ho4_A Haloacid dehalogenase-l  60.7     8.3 0.00035   18.2   3.9   47   90-142   177-224 (259)
 57 2go7_A Hydrolase, haloacid deh  59.4       7 0.00029   18.8   3.3   43   91-140   139-181 (207)
 58 2fdr_A Conserved hypothetical   57.9     8.9 0.00037   18.0   3.6   44   92-142   143-187 (229)
 59 1te2_A Putative phosphatase; s  57.6     8.9 0.00037   18.0   3.6   44   91-141   149-192 (226)
 60 3err_A Fusion protein of micro  57.3      10 0.00042   17.6   5.6   61   54-114   351-423 (536)
 61 2odr_A Phosphoseryl-tRNA synth  56.2      10 0.00044   17.5   9.4  127   52-190   219-360 (665)
 62 3dv9_A Beta-phosphoglucomutase  55.9      10 0.00043   17.5   3.7   45   91-142   164-209 (247)
 63 2hoq_A Putative HAD-hydrolase   54.9      11 0.00046   17.4   4.6   45   92-142   150-195 (241)
 64 3nem_A Aspartyl-tRNA synthetas  54.9     1.6 6.8E-05   23.3  -0.5   67   14-80    141-226 (438)
 65 2wf7_A Beta-PGM, beta-phosphog  53.8      11 0.00048   17.2   3.7   45   91-142   144-189 (221)
 66 3m4p_A Ehasnrs, asparaginyl-tR  52.1     1.6 6.8E-05   23.4  -0.9   61   14-74    160-238 (456)
 67 3l5k_A Protein GS1, haloacid d  47.2     5.4 0.00023   19.6   1.1   96   46-142   117-217 (250)
 68 2fi1_A Hydrolase, haloacid deh  45.4      12 0.00052   17.0   2.7   89   46-145    87-182 (190)
 69 3f7c_A Protein of unknown func  44.5      15 0.00065   16.3   6.2   61  238-305    76-136 (200)
 70 1zcz_A Bifunctional purine bio  41.6     6.2 0.00026   19.1   0.7   36   67-102   176-217 (464)
 71 2pib_A Phosphorylated carbohyd  39.7      17 0.00072   15.9   2.7   43   91-140   139-182 (216)
 72 1vjr_A 4-nitrophenylphosphatas  35.6      21 0.00088   15.3   3.2   45   92-142   195-240 (271)
 73 2odr_D Phosphoseryl-tRNA synth  35.5      21 0.00088   15.3   9.0  128   51-190   218-360 (685)
 74 1wle_A Seryl-tRNA synthetase;   35.5      21 0.00088   15.3   4.9  132   15-154   224-413 (501)
 75 2hdo_A Phosphoglycolate phosph  33.6      22 0.00095   15.1   3.5   42   91-139   137-178 (209)
 76 2q9r_A Protein of unknown func  33.5      23 0.00095   15.1   7.4   61  238-305    77-137 (200)
 77 2dq3_A Seryl-tRNA synthetase;   32.9      23 0.00097   15.0   2.9   81   54-143   248-343 (425)
 78 2dq0_A Seryl-tRNA synthetase;   32.8      23 0.00097   15.0   2.8   81   55-144   270-365 (455)
 79 2cja_A Seryl-tRNA synthetase;   29.8      11 0.00047   17.3   0.5  117   56-178   343-493 (522)
 80 3mc1_A Predicted phosphatase,   29.5      26  0.0011   14.6   2.5   45   91-142   141-186 (226)
 81 1wdi_A Hypothetical protein TT  29.4      21 0.00089   15.3   1.8   27   46-73     81-107 (345)
 82 2x4d_A HLHPP, phospholysine ph  29.3      26  0.0011   14.6   4.8   47   90-142   188-235 (271)
 83 2odr_C Phosphoseryl-tRNA synth  29.2      26  0.0011   14.6   8.8  127   53-191   220-361 (701)
 84 1g8m_A Aicar transformylase-IM  27.2      28  0.0012   14.3   3.0   34   69-102   204-245 (593)
 85 2qlt_A (DL)-glycerol-3-phospha  26.2      30  0.0012   14.2   3.6   47   91-142   169-221 (275)
 86 1gji_A C-REL protein, C-REL pr  25.9      17 0.00071   16.0   0.8   14  158-171   158-171 (275)
 87 3cmq_A Phenylalanyl-tRNA synth  25.8      20 0.00083   15.5   1.2   77  105-187   214-296 (415)
 88 2hi0_A Putative phosphoglycola  25.3      31  0.0013   14.1   3.7   45   91-142   164-209 (240)
 89 1qtq_A GLNRS, protein (glutami  23.8      16 0.00067   16.2   0.4   71   97-168    76-153 (553)
 90 2hx1_A Predicted sugar phospha  22.5      34  0.0014   13.7   5.1   50   87-139   199-249 (284)
 91 2oiz_D Aromatic amine dehydrog  20.9      30  0.0013   14.1   1.3   21   53-73     53-73  (135)
 92 1v54_F VI, cytochrome C oxidas  20.9      36  0.0015   13.6   1.7   25  162-187     7-33  (98)
 93 1yy3_A S-adenosylmethionine:tR  20.4      30  0.0013   14.1   1.2   14  149-162   143-156 (346)

No 1  
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=100.00  E-value=0  Score=1221.61  Aligned_cols=290  Identities=57%  Similarity=1.021  Sum_probs=284.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf             43356777799999999999986695896116754333224857898744834401676415578876554667750011
Q gi|254780757|r    4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQH   83 (307)
Q Consensus         4 ~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~   83 (307)
                      +....+.|+||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+|||||+|||||||
T Consensus         6 ~~~~~~~m~fq~~i~~L~~fW~~~GC~i~qpyd~evGAgT~~P~T~lr~lgp~pw~~aYvqPsrRP~DgRYGeNPNRLq~   85 (298)
T 1j5w_A            6 IHHHHHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQR   85 (298)
T ss_dssp             -------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHCE
T ss_conf             33210322299999999999987796887675542464668889998631987632664246779998876789323110


Q ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCC
Q ss_conf             44445575798335899999999981999621717988328887001101232176887874147778998668257751
Q gi|254780757|r   84 YYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPI  163 (307)
Q Consensus        84 y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv  163 (307)
                      ||||||||||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||
T Consensus        86 y~QfQVilKPsp~n~q~lYL~SL~~igid~~~hDIrFveDnWEsPtLGAwGlGWEVwldGMEItQFTYFQQvGGi~c~pv  165 (298)
T 1j5w_A           86 YFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDI  165 (298)
T ss_dssp             EEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSC
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCCC
T ss_conf             03458997789466899999999983999202144786227778761211200599988768752440311277533442


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             45678789999999869982113320688878831106244746997776350179899999999999999999850066
Q gi|254780757|r  164 SGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIP  243 (307)
Q Consensus       164 ~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP  243 (307)
                      ++||||||||||||||+|||||||+||    +++||||||+|+|+|||+||||+||+++|+++|++||+||++||+++||
T Consensus       166 ~~EiTYGLERiaMylQ~vdnv~Dl~w~----~~vtYGDif~q~E~E~S~YNFe~ad~~~L~~~F~~~E~Ea~rLle~~L~  241 (298)
T 1j5w_A          166 PLEITYGLERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY  241 (298)
T ss_dssp             CEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             201002499999998487335030057----9974327753558999885535339999999999999999999866999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf             53233553013828999999999878883875017889999999999999999999854516-89
Q gi|254780757|r  244 NEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG-GH  307 (307)
Q Consensus       244 ~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~-g~  307 (307)
                                +||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+. |+
T Consensus       242 ----------lPAYD~~LKaSH~FNLLDARGaISVtER~~YI~RVR~LAk~~A~~y~e~r~~lgf  296 (298)
T 1j5w_A          242 ----------LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENS  296 (298)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ----------6669999999888888763478758999999999999999999999998875599


No 2  
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=98.84  E-value=3.7e-08  Score=78.74  Aligned_cols=265  Identities=18%  Similarity=0.278  Sum_probs=155.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCCCCC-CCC
Q ss_conf             6777799999999999986695896116754---------3332--248578987448344016764155788765-546
Q gi|254780757|r    8 KNDLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAG--TFHPSTTLRALGPLSWKAAYVQPSRRPLDG-RYA   75 (307)
Q Consensus         8 ~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAg--T~hp~T~lr~lg~~pw~~aYvqPsrRP~Dg-RYG   75 (307)
                      +.+++..+|-.+--+|+.++|+.++.+|.+=         +.||  .|-|.-+....-|..=+++=.|||-|-.|= .-|
T Consensus        57 ~~~~~~~eiR~~fl~FF~~~gH~~i~s~pvvp~~d~~llft~Agm~~Fkp~~~~G~~~pp~~~l~~sQkCiR~nDld~VG  136 (739)
T 2ztg_A           57 KKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVG  136 (739)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECGGGGGGTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCHHCHHHHCCCCCCCCCCCCCCCCCCEECCCHHHCC
T ss_conf             88688999999999999878987807858288999984676057410616551986689988714553512137687629


Q ss_pred             CCCCCCCEEEEEEEEECCC----------CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEE
Q ss_conf             6775001144445575798----------335899999999981999621717988328887001101232176887874
Q gi|254780757|r   76 ENPNRLQHYYQFQVIIKPN----------PLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGME  145 (307)
Q Consensus        76 eNPNRlq~y~QfQVilKPs----------p~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGME  145 (307)
                      .. +  .||.=|.-+=-=|          .+...+.-.+=|..|||++.  +|-|.||.|+..  |.-|--.|+-.+|+|
T Consensus       137 ~t-~--rH~TfFEMlGn~SFg~~~k~~Yfk~e~i~~~~e~l~~lGi~~~--~i~~~e~~W~~g--G~~GPc~E~~~~glE  209 (739)
T 2ztg_A          137 RT-G--RHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVKKE--DIVYKEEPWAGG--GNAGPCLEAIVGGLE  209 (739)
T ss_dssp             TS-S--SCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCCGG--GCEEEEEEEEET--TEEEEEEEEEETTEE
T ss_pred             CC-C--CCCHHEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHH--HCCCCCCCCCCC--CCCCCCCCCCCCCCC
T ss_conf             88-8--7630003566503189757777788999999999998399899--901456752248--996488421338600


Q ss_pred             EHHHHHHHH----HCCCC--------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCC---HHHHH
Q ss_conf             147778998----66825--------775145678789999999869982113320688-----87883110---62447
Q gi|254780757|r  146 ISQFTYFQQ----VCGIE--------CSPISGEITYGLERLAMYVQNVNSVYDIVFNAI-----EGQNVLYG---DIFAQ  205 (307)
Q Consensus       146 ItQFTYFQQ----vGGi~--------c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~~-----~~~~vtYG---dif~q  205 (307)
                      |--.-+.|-    -|.++        +.--.+.--|||||+++.+|++.++||..+...     +.-++.|+   +.+..
T Consensus       210 i~nlVFmq~~~~~~G~~e~~~~~~~~lp~~~VDTG~GLER~~~v~qg~pt~Yd~~f~~~i~~~~~~~~~~~~~~~~~~~~  289 (739)
T 2ztg_A          210 VATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRR  289 (739)
T ss_dssp             EEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHCHHHHHHHHHTSCCSSCTTCHHHHH
T ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             02100101454899870236544576788641677415666542079888443432578999998608876762255666


Q ss_pred             HHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHCCCCHHHHH
Q ss_conf             469977763--5017989999999999999999985006653233553013828999999999--878883875017889
Q gi|254780757|r  206 SEQEYSRYN--FEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCIKASHI--FNLLDARGVISTTER  281 (307)
Q Consensus       206 ~E~E~S~YN--FE~Ad~~~L~~~F~~yE~Ea~rLle~~LP~~~~~~~~lvlPAYD~~LKaSH~--FNLLDARGaISVTER  281 (307)
                      --.+.|++.  ....+.+.+....+......    .  +..  ........|.-..=.=|-|+  --.+=|-|++--.+-
T Consensus       290 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~--~~~--~~~~~~~~~~~~~rvIADH~Ra~~f~IaDGv~PSN~G  361 (739)
T 2ztg_A          290 IVAESSKLAGIMGELRGERLNQLRKSVADTV----G--VSV--EELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAG  361 (739)
T ss_dssp             HHHHHHHHHHHHTTCCTHHHHHHHHHHHHHH----S--SCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSH
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC----C--CCH--HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             6887776517666433025777754344422----7--776--7740123431001214289888898860575567677


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780757|r  282 QRYILR  287 (307)
Q Consensus       282 q~YI~R  287 (307)
                      ++|++|
T Consensus       362 rGYvlR  367 (739)
T 2ztg_A          362 AGYLAR  367 (739)
T ss_dssp             HHHHHH
T ss_pred             CCHHHH
T ss_conf             428999


No 3  
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=98.56  E-value=1.4e-06  Score=67.36  Aligned_cols=177  Identities=21%  Similarity=0.342  Sum_probs=125.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHC---CCEEEECCCCC---------C--CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf             567777999999999999866---95896116754---------3--332248578987448344016764155788765
Q gi|254780757|r    7 KKNDLSFQNIILTLTQYWAQQ---GCTILQPYDME---------V--GAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDG   72 (307)
Q Consensus         7 ~~~~~~fq~ii~~L~~fW~~~---GC~i~qpyd~e---------~--GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~Dg   72 (307)
                      .+.+++..+|=.+--+|+.++   |..++.||.+-         +  |-..|-|.-|....-|..=+++-.|||-|-.|=
T Consensus        53 ~~~~~~~~eiR~~fl~fF~~~~~~gH~~i~~~pvvp~~~~~llft~Agm~~Fkp~v~~G~~~pp~~~l~~sQ~CiR~nDl  132 (752)
T 2zze_A           53 IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDI  132 (752)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTG
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH
T ss_conf             77758999999999998386888997387147837799998246603664355721578768999972455200003747


Q ss_pred             CCCCCCCC-CCEEEEEEEEECCCC----------HHHHHHHHHHH-HHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE
Q ss_conf             54667750-011444455757983----------35899999999-9819996217179883288870011012321768
Q gi|254780757|r   73 RYAENPNR-LQHYYQFQVIIKPNP----------LNLQNLYIESL-KAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECW  140 (307)
Q Consensus        73 RYGeNPNR-lq~y~QfQVilKPsp----------~niq~lYl~SL-~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvw  140 (307)
                         +|--| -.||.=|.-+=-=|-          +...++-.+=| +.+||+|.  +|-|.|+-|+--  |--|=--||-
T Consensus       133 ---dnVG~t~rH~T~FEMlGn~sFg~~~~~~Y~k~e~i~~~~e~lt~~lgi~~~--~i~~~en~W~~G--G~~GPc~Ei~  205 (752)
T 2zze_A          133 ---DNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPE--DITFKENPWAGG--GNAGPAFEVL  205 (752)
T ss_dssp             ---GGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGG--GEEEEECCEEET--TEEECEEEEE
T ss_pred             ---HHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEECHH--HCCCCCCCCCCC--CCCCCCEEEE
T ss_conf             ---655788764055760412512899701769999999999975212342576--615545766589--8998875688


Q ss_pred             ECCEEEHHHHHHH--HH--CCC----------CCCCC---HHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             8787414777899--86--682----------57751---456787899999998699821133206
Q gi|254780757|r  141 CDGMEISQFTYFQ--QV--CGI----------ECSPI---SGEITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       141 ldGMEItQFTYFQ--Qv--GGi----------~c~pv---~~EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                      -+|+||--.-+.|  +.  |+.          ...|.   .+---|||||||+.+||+.++||..+.
T Consensus       206 ~~glEi~nlVFmq~~~~~~g~~~~~~~~~~~~~~~~Lp~k~VDTGmGLERl~~vlQg~~t~Ydtd~~  272 (752)
T 2zze_A          206 YRGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLG  272 (752)
T ss_dssp             ETTEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHSH
T ss_pred             ECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHCCCH
T ss_conf             7144421000100255888875654233453014668878658887899999998289970221341


No 4  
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=98.25  E-value=2.4e-06  Score=65.57  Aligned_cols=173  Identities=23%  Similarity=0.254  Sum_probs=111.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCC--CCCCHHHHHHHCCCCCCEEEEECCCCCCC----CCC-
Q ss_conf             77799999999999986695896116754---------333--22485789874483440167641557887----655-
Q gi|254780757|r   10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGA--GTFHPSTTLRALGPLSWKAAYVQPSRRPL----DGR-   73 (307)
Q Consensus        10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GA--gT~hp~T~lr~lg~~pw~~aYvqPsrRP~----DgR-   73 (307)
                      +||..+|-.+--+|+.++|+.++.+|.+=         ++|  -.|-| -|+...-|..-+++-+|||-|-+    |=. 
T Consensus         2 ~~t~~eiR~~fl~fF~~~gH~~i~s~~vvp~~d~~llft~Agm~~Fkp-~~~G~~~p~~~~~~~~Q~CiR~~gkhnDld~   80 (465)
T 1yfs_A            2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKN-VFLGLEKRPYKRATSCQKCLRVSGKHNDLEQ   80 (465)
T ss_dssp             CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHH-HHHTSSCCSCSEEEEEEEEECEETTEECGGG
T ss_pred             CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHCHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             988999999999999868998858878678999973000034431502-3358989998885466636335887654665


Q ss_pred             CCCCCCCCCEEEEEEEEECCCCH--------------------------------HHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             46677500114444557579833--------------------------------5899999999981999621717988
Q gi|254780757|r   74 YAENPNRLQHYYQFQVIIKPNPL--------------------------------NLQNLYIESLKAVGIDPLIHDVRFV  121 (307)
Q Consensus        74 YGeNPNRlq~y~QfQVilKPsp~--------------------------------niq~lYl~SL~~iGid~~~hDIrFv  121 (307)
                      -|.. +|  ||.=|..+=-=|-.                                ...+-|--=.+.+||++  +.|-+.
T Consensus        81 VG~t-~r--H~T~FEMlGn~sFgdYfK~eai~~a~e~lt~~l~l~~~~l~vt~~~~d~e~~~~~~~~~gi~~--~~i~~~  155 (465)
T 1yfs_A           81 VGYT-SR--HHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPS--ERIWRL  155 (465)
T ss_dssp             BTTB-SS--CCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCG--GGEEEE
T ss_pred             HCCC-CC--CCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCH--HHCEEC
T ss_conf             0888-87--512322055411587437889999999876650678665379982760788899998609987--882304


Q ss_pred             --ECC-CCCCHHHHCCCCEEEEECC----------EEEHHHH--HHHH-HCC-C-CCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             --328-8870011012321768878----------7414777--8998-668-2-5775145678789999999869982
Q gi|254780757|r  122 --EDN-WESPTLGAWGLGWECWCDG----------MEISQFT--YFQQ-VCG-I-ECSPISGEITYGLERLAMYVQNVNS  183 (307)
Q Consensus       122 --eDn-WEsPtLGAwGlGWEvwldG----------MEItQFT--YFQQ-vGG-i-~c~pv~~EiTYGLERiaMylQ~vdn  183 (307)
                        +|| |+.+--|.-|=-=|+-.|+          +||-...  -|.+ -.| + ++.--.+.--+||||||+.+|++.+
T Consensus       156 ~~~dNfW~~g~~GpcGPcsEi~yd~~~~~~~~~r~lEiwNlVFmqy~~~~~G~l~~Lp~k~IDTGmGLERl~~vlqg~~s  235 (465)
T 1yfs_A          156 GEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS  235 (465)
T ss_dssp             CHHHHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             75567231799988877525786367766898777986000243112579988856777645658419999999837887


Q ss_pred             EEEEE
Q ss_conf             11332
Q gi|254780757|r  184 VYDIV  188 (307)
Q Consensus       184 vyDl~  188 (307)
                      +||+.
T Consensus       236 ~ydtd  240 (465)
T 1yfs_A          236 NFEID  240 (465)
T ss_dssp             GGGST
T ss_pred             CCCHH
T ss_conf             55638


No 5  
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=98.13  E-value=3.1e-05  Score=57.55  Aligned_cols=167  Identities=26%  Similarity=0.280  Sum_probs=103.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCC--CCCCHHHHHHHCCCCCCEEEEECCCCCCC----C---
Q ss_conf             77799999999999986695896116754---------333--22485789874483440167641557887----6---
Q gi|254780757|r   10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGA--GTFHPSTTLRALGPLSWKAAYVQPSRRPL----D---   71 (307)
Q Consensus        10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GA--gT~hp~T~lr~lg~~pw~~aYvqPsrRP~----D---   71 (307)
                      .+|-.+|-.+--+|+.++|+.++.+|.+=         +.|  ..|-| -|+...-|.--+++-+|||-|-.    |   
T Consensus         1 ~~s~~eiR~~Fl~FF~~~gH~~v~s~~vvp~~d~~llft~Agm~~Fkp-~f~G~~~p~~~rl~~sQkCiR~ggkhnDld~   79 (441)
T 3hy0_A            1 SKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKD-VFLGLDKRNYSRATTSQRCVRAGGKHNDLEN   79 (441)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHH-HHHTSSCCSCSEEEEEEEEECEETTEECGGG
T ss_pred             CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEECCCHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             977899999999999868988848878678999973110045343246-6549999999973143416236898777877


Q ss_pred             ----CC----------------------------------CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             ----55----------------------------------4667750011444455757983358999999999819996
Q gi|254780757|r   72 ----GR----------------------------------YAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDP  113 (307)
Q Consensus        72 ----gR----------------------------------YGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~  113 (307)
                          ||                                  ||-.|+||.--+=         +.-.+.+---.+.+||+.
T Consensus        80 VG~t~rH~TfFEMlGn~SFgdyfK~eai~~awe~lt~~~~~~l~~~rl~vtv~---------~~D~ea~~~w~~~~gi~~  150 (441)
T 3hy0_A           80 VGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVY---------ESDDEAYEIWEKEVGIPR  150 (441)
T ss_dssp             BTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEE---------TTCHHHHHHHHHTTCCCG
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEEEEEEE---------ECCHHHHHHHHHCCCCCH
T ss_conf             28888625768754121448846788999999986023200205753699966---------367788999997279874


Q ss_pred             CCCCEEEE--------ECC-CCCCHHHHCCCCEEEEEC-------------------CEEEHHHH---HHHHHCC-C-CC
Q ss_conf             21717988--------328-887001101232176887-------------------87414777---8998668-2-57
Q gi|254780757|r  114 LIHDVRFV--------EDN-WESPTLGAWGLGWECWCD-------------------GMEISQFT---YFQQVCG-I-EC  160 (307)
Q Consensus       114 ~~hDIrFv--------eDn-WEsPtLGAwGlGWEvwld-------------------GMEItQFT---YFQQvGG-i-~c  160 (307)
                       .+=+|+-        +|| |+..--|.-|-.=||-.|                   ++||--.-   |.+.--| + ++
T Consensus       151 -~~i~~~~~~~~~~~~~dNfW~~G~~GPcGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~dG~l~~L  229 (441)
T 3hy0_A          151 -ERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPL  229 (441)
T ss_dssp             -GGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEE
T ss_pred             -HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEC
T ss_conf             -6289867656656534463215898688886689994365246899998776676135662265310003589976346


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             751456787899999998699821133
Q gi|254780757|r  161 SPISGEITYGLERLAMYVQNVNSVYDI  187 (307)
Q Consensus       161 ~pv~~EiTYGLERiaMylQ~vdnvyDl  187 (307)
                      .--.+.--+||||||+.+|++.++||.
T Consensus       230 p~k~IDTGmGLERl~~vlqg~~s~ydt  256 (441)
T 3hy0_A          230 PKPSVDTAMGLERIAAVLQHVNSNYDI  256 (441)
T ss_dssp             EEEEEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             765532242599999997189964100


No 6  
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=94.71  E-value=0.3  Score=28.70  Aligned_cols=167  Identities=18%  Similarity=0.173  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEECCCCC-------CCCCCCCH--------------------HHH-----HHHCCCCCCE
Q ss_conf             799999999999986695896116754-------33322485--------------------789-----8744834401
Q gi|254780757|r   12 SFQNIILTLTQYWAQQGCTILQPYDME-------VGAGTFHP--------------------STT-----LRALGPLSWK   59 (307)
Q Consensus        12 ~fq~ii~~L~~fW~~~GC~i~qpyd~e-------~GAgT~hp--------------------~T~-----lr~lg~~pw~   59 (307)
                      .+..++..+.+|..+.|...+.+-.++       .|.+.-||                    ..+     .....+.|-+
T Consensus        72 ~~~~l~~~ir~~~~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lrp~~~p~~~~~~~~~~~~~~~p~r  151 (288)
T 3dsq_A           72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIR  151 (288)
T ss_dssp             HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999999887989987526522155345765443302204763742013435771788999986301479848


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC--CCCH---HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH-C
Q ss_conf             676415578876554667750011444455757--9833---589999999998199962171798832888700110-1
Q gi|254780757|r   60 AAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK--PNPL---NLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGA-W  133 (307)
Q Consensus        60 ~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK--Psp~---niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGA-w  133 (307)
                      +.++-+|.|-.+..    ..|+-.++|.-+.+-  +...   ++.++.-+.|+.+|+.    |.+.+-+....+.... +
T Consensus       152 ~~~ig~vfR~E~~~----~~h~~eFtQ~e~~~~~~~~~~~~~~l~~l~~~~l~~~g~~----~~~~~~~~~~~~~~~~~~  223 (288)
T 3dsq_A          152 IFEIGTCYRKESQG----AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR----EFELVTESSVVYGDTVDV  223 (288)
T ss_dssp             EEEEEEEECSCCSS----SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC----CCEEEECCCCSSCCCEEE
T ss_pred             EEEECEEECCCCCC----CCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCCC----CCEEEECCCCCCCEEEEC
T ss_conf             99966255568688----8867827773158986988999999999999999985997----787997047777307861


Q ss_pred             CCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             232176887874147778998668257751456787899999998699821133206
Q gi|254780757|r  134 GLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       134 GlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                      +-||.-.-.||=-..  -....||++ +|+.+ .-+|+||+||..-+++++-++.=+
T Consensus       224 ~~~~~El~~~~~~~~--~~~~~~~~~-~~~~~-~g~gierlam~~~g~~dir~~~r~  276 (288)
T 3dsq_A          224 MKGDLELASGAMGPH--FLDEKWEIF-DPWVG-LGFGLERLLMIREGTQHVQSMARS  276 (288)
T ss_dssp             EETTEEEEEEEEESC--TTTTTTTCC-SCEEE-EEEEHHHHHHHHHTCSCGGGGSSC
T ss_pred             CCCEEEEECCCCCHH--HHHHCCCCC-CCCEE-EECCHHHHHHHHCCCCCHHHHHHC
T ss_conf             896688606875899--998658999-98788-735799999987099857776312


No 7  
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A*
Probab=93.49  E-value=0.5  Score=27.04  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCC-------CCCCCCCH-------------------HHHHH---H---CCCCCCEE
Q ss_conf             99999999999986695896116754-------33322485-------------------78987---4---48344016
Q gi|254780757|r   13 FQNIILTLTQYWAQQGCTILQPYDME-------VGAGTFHP-------------------STTLR---A---LGPLSWKA   60 (307)
Q Consensus        13 fq~ii~~L~~fW~~~GC~i~qpyd~e-------~GAgT~hp-------------------~T~lr---~---lg~~pw~~   60 (307)
                      .-.++..+.+|-.++|++-....-++       .|-+.-+|                   .+..+   .   -.+.|-++
T Consensus        80 ~~~i~~~ir~~f~~~Gf~EV~TP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~p~r~  159 (291)
T 2zin_A           80 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKI  159 (291)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999998879999765223312201368887741212132578011266423451457778776521334024


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC---CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCE
Q ss_conf             76415578876554667750011444455757---983358999999999819996217179883288870011012321
Q gi|254780757|r   61 AYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK---PNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGW  137 (307)
Q Consensus        61 aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK---Psp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGW  137 (307)
                      .++.+|.|..+..    ..|+..++|.-+.+-   .+-.++..+.-+-|+.+|++..     .+++...-     .|-..
T Consensus       160 f~ig~vfR~e~~~----~~h~~eF~q~e~~~~~~~~~~~dl~~~~~~~l~~lg~~~~-----~~~~~~~~-----~~~~~  225 (291)
T 2zin_A          160 FEIGPCYRKESDG----KEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFK-----IVGDSCMV-----YGDTL  225 (291)
T ss_dssp             EEEEEEECCCSCS----SSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCCCE-----EECC----------CEEE
T ss_pred             EEECCEEEECCCC----CCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE-----EECCCCCC-----CCCCC
T ss_conf             6641012203456----7888863899999989999799999999999998599278-----71366567-----67660


Q ss_pred             EEEECCEEEHHHHHH----HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             768878741477789----98668257751456787899999998699821133
Q gi|254780757|r  138 ECWCDGMEISQFTYF----QQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI  187 (307)
Q Consensus       138 EvwldGMEItQFTYF----QQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl  187 (307)
                      +++.+..||..+--+    -.--|++  +...-.-+|+||+||...+++|+-.+
T Consensus       226 ~~~~~~~ei~~~~~~~~~v~~~~gid--~p~~~~g~g~erla~~~~~~~dir~~  277 (291)
T 2zin_A          226 DVMHGDLELSSAVVGPIPLDREWGID--KPWIGAGFGLERLLKVKHDFKNIKRA  277 (291)
T ss_dssp             EEEETTEEEEEEEESCCGGGGGGTCC--SCEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred             CCCCCCEEEECCCEECHHHHHHCCCC--CCEEEECCCHHHHHHHHCCCCCHHHH
T ss_conf             21668757403860169999866999--98188675899999875299934555


No 8  
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459}
Probab=93.28  E-value=0.18  Score=30.36  Aligned_cols=47  Identities=28%  Similarity=0.473  Sum_probs=40.3

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf             579833589999999998199962171798832888700110123217-68878
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG  143 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG  143 (307)
                      -||+|    ++|..-++.+|++|.  ++-||.|+|.+--.+|...|+. ||++.
T Consensus        96 ~KP~p----~~~~~~l~~~~i~p~--~~l~VGD~~~~Di~~A~~aG~~ti~v~~  143 (189)
T 3ib6_A           96 EKPDK----TIFDFTLNALQIDKT--EAVMVGNTFESDIIGANRAGIHAIWLQN  143 (189)
T ss_dssp             CTTSH----HHHHHHHHHHTCCGG--GEEEEESBTTTTHHHHHHTTCEEEEECC
T ss_pred             CCCCH----HHHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHHCCCEEEEECC
T ss_conf             89884----899999997423466--3289974708879999985997999889


No 9  
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=91.24  E-value=0.046  Score=34.59  Aligned_cols=123  Identities=19%  Similarity=0.253  Sum_probs=71.9

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHH---HHHHHHHCCCCCCCCCEEEEEC--CCCCCHH
Q ss_conf             4401676415578876554667750011444455757983358999---9999998199962171798832--8887001
Q gi|254780757|r   56 LSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNL---YIESLKAVGIDPLIHDVRFVED--NWESPTL  130 (307)
Q Consensus        56 ~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~l---Yl~SL~~iGid~~~hDIrFveD--nWEsPtL  130 (307)
                      .|.+...+..+.|+.+-    .+..+-.+||..-++-.---++.+|   --.-++.+|    ..++||+.+  -+-.|+.
T Consensus       346 ~p~k~f~i~rvfR~e~~----D~tH~~~fhQ~eg~v~~~~~~~~~L~~~l~~~~~~lg----~~~vR~~paYfPfTePS~  417 (508)
T 3l4g_A          346 TPVKYFSIDRVFRNETL----DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLG----ITQLRFKPAYNPYTEPSM  417 (508)
T ss_dssp             CCEEEEEEEEEECCSCC----CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTTT----CCCCEEEECCCTTCSSEE
T ss_pred             CCEEECCCCCCCCCCCC----CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC----CCEEEECCCCCCCCCCEE
T ss_conf             98045245552346778----6765776530311462278569999999999999739----964870689899999808


Q ss_pred             HHCCCCEEEEECC----EEEHHHHHHH----HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             1012321768878----7414777899----86682577514567878999999986998211332068
Q gi|254780757|r  131 GAWGLGWECWCDG----MEISQFTYFQ----QVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNA  191 (307)
Q Consensus       131 GAwGlGWEvwldG----MEItQFTYFQ----QvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~  191 (307)
                      --     +||.+|    +||--.--|.    .-.|++.+-...-.--|||||||-+-++++|-++--++
T Consensus       418 Ev-----~v~~~g~~~WlEv~g~G~~rpevL~~~Gi~~~~~~~AfGlGLERlAMl~~gI~DIR~l~~~~  481 (508)
T 3l4g_A          418 EV-----FSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHK  481 (508)
T ss_dssp             EE-----EECCSTTSSCEEEEEEECCCHHHHGGGTCCTTEEEEEEEEESHHHHTTTTTCSCGGGTSSTT
T ss_pred             EE-----EEECCCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHHHCCC
T ss_conf             99-----99838999748982572577999986698989649998643989999980997677862578


No 10 
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=90.58  E-value=1.1  Score=24.68  Aligned_cols=134  Identities=19%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             HHHHC---CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH---HHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             98744---83440167641557887655466775001144445575798335899---9999999819996217179883
Q gi|254780757|r   49 TLRAL---GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN---LYIESLKAVGIDPLIHDVRFVE  122 (307)
Q Consensus        49 ~lr~l---g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~---lYl~SL~~iGid~~~hDIrFve  122 (307)
                      .++.+   .+.|.++..+..|.|...-   +.+-.+-.+||.-.++--.--++.+   ..-.-++.+|...  -.+|+++
T Consensus       206 ~l~~l~e~~~~Pir~~s~GrVyRrD~i---~D~tH~~~FhQ~Eglvvd~~vt~~dLK~~L~~f~~~~~~~~--~k~R~~~  280 (549)
T 2du7_A          206 TLSSLIKKRKLPLKLFSIDRCFRREQR---EDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTK--FKFKPDE  280 (549)
T ss_dssp             HHHTTTTTSCSSEEEEEEEEECCCCSS---CSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTCCC--CCCEECT
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCCC---CCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC--CEEEECC
T ss_conf             999998527998056336654445555---64211787737776896078789999999999999977988--3898788


Q ss_pred             CC--CCCCHHH--H-----CCCCE-EEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             28--8870011--0-----12321-7688787414777899866825775145678789999999869982113320688
Q gi|254780757|r  123 DN--WESPTLG--A-----WGLGW-ECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNAI  192 (307)
Q Consensus       123 Dn--WEsPtLG--A-----wGlGW-EvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~~  192 (307)
                      +-  |-.|+.-  .     |+=+| ||-=-|| |.+ ..+ .-.||+..  ..-.--|||||||-+-++++|-+|...+.
T Consensus       281 syFPfTePs~EveV~~~~~~~g~WlEIlGcGm-v~P-~VL-~~~Gid~~--g~AfGlGlERLAMl~ygI~DIR~Ly~p~~  355 (549)
T 2du7_A          281 KKSKYYTPETQTEVYAYHPKLGEWIEVATFGV-YSP-IAL-AKYNIDVP--VMNLGLGVERLAMIIYGYEDVRAMVYPQF  355 (549)
T ss_dssp             TCCTTBCTTTCEEEEECCSSSSCSEEEEEEEE-BCH-HHH-HHTTCCSC--EEEEEEBHHHHHHHHTTCSCSHHHHSSSS
T ss_pred             CCCCCCCCCEEEEEEEEECCCCEEEEEECCCC-CCH-HHH-HHCCCCCC--EEEEEECHHHHHHHHCCCCHHHHHHCCCC
T ss_conf             88899999657899997088981899957847-788-999-85697987--68987639999999729976776416755


No 11 
>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3; HDHD3, structural genomics, structural genomics consortium, SGC; 1.55A {Homo sapiens}
Probab=88.87  E-value=0.6  Score=26.47  Aligned_cols=91  Identities=21%  Similarity=0.278  Sum_probs=58.6

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             8987448344016764155788765546677500114444557------5798335899999999981999621717988
Q gi|254780757|r   48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVRFV  121 (307)
Q Consensus        48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIrFv  121 (307)
                      .+|+.|..+-++++-+--+-+  .-+---.-..+.+|+-+-+.      -||+|    ++|..-|+.+|++|  .++-||
T Consensus       113 ~~L~~L~~~g~~l~i~TN~~~--~~~~~l~~~gl~~~Fd~i~~s~~~g~~KP~p----~~f~~~l~~l~~~p--~~~l~V  184 (263)
T 3k1z_A          113 DTLRECRTRGLRLAVISNFDR--RLEGILGGLGLREHFDFVLTSEAAGWPKPDP----RIFQEALRLAHMEP--VVAAHV  184 (263)
T ss_dssp             HHHHHHHHTTCEEEEEESCCT--THHHHHHHTTCGGGCSCEEEHHHHSSCTTSH----HHHHHHHHHHTCCG--GGEEEE
T ss_pred             HHHHHHHHCCCCEEEECCCCC--CHHHHHHCCCCCCCCCCCEEECCCCCCCCCH----HHHHHHHHHCCCCH--HHEEEE
T ss_conf             999999977996577558531--0024442146543312001001169999798----99999999829997--687999


Q ss_pred             ECCCCCCHHHHCCCCEE-EEECCEEE
Q ss_conf             32888700110123217-68878741
Q gi|254780757|r  122 EDNWESPTLGAWGLGWE-CWCDGMEI  146 (307)
Q Consensus       122 eDnWEsPtLGAwGlGWE-vwldGMEI  146 (307)
                      .|+.++-..||...||. ||+++=+-
T Consensus       185 GD~~~~Di~~A~~aG~~tv~v~~~~~  210 (263)
T 3k1z_A          185 GDNYLCDYQGPRAVGMHSFLVVGPQA  210 (263)
T ss_dssp             ESCHHHHTHHHHTTTCEEEEECCSSC
T ss_pred             EECCHHHHHHHHHCCCEEEEECCCCC
T ss_conf             95878889999981998999821887


No 12 
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=88.38  E-value=0.33  Score=28.34  Aligned_cols=44  Identities=30%  Similarity=0.479  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||.|    +.|+.-++.+|++|.  ++-||+|+. +-..||-..||. ||++
T Consensus       147 KP~p----~~f~~a~~~lgv~p~--e~l~VgD~~-~dv~~A~~aG~~tv~v~  191 (253)
T 1qq5_A          147 KPHP----DSYALVEEVLGVTPA--EVLFVSSNG-FDVGGAKNFGFSVARVA  191 (253)
T ss_dssp             TTSH----HHHHHHHHHHCCCGG--GEEEEESCH-HHHHHHHHHTCEEEEEC
T ss_pred             CCCH----HHHHHHHHHHCCCHH--HEEEECCCH-HHHHHHHHCCCEEEEEC
T ss_conf             9989----999999999587846--689882899-99999998599499982


No 13 
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3}
Probab=86.68  E-value=0.94  Score=25.07  Aligned_cols=46  Identities=20%  Similarity=0.442  Sum_probs=37.9

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||.|+    +|..-++.+|++|  .++-||.|+.++--.||...||- ||++
T Consensus       157 ~KP~~~----~~~~~~~~~~~~p--~~~l~VGD~~~~Di~~A~~~G~~~i~v~  203 (235)
T 2om6_A          157 YKPRKE----MFEKVLNSFEVKP--EESLHIGDTYAEDYQGARKVGMWAVWIN  203 (235)
T ss_dssp             CTTCHH----HHHHHHHHTTCCG--GGEEEEESCTTTTHHHHHHTTSEEEEEC
T ss_pred             CCCCHH----HHHHHHHHHCCCH--HHEEEEEECCHHHHHHHHHCCCEEEEEC
T ss_conf             787089----9999999929795--6858998474876999998699899989


No 14 
>2gfh_A Haloacid dehalogenase-like hydrolase domain containing 4; 17391249, protein C20ORF147 homolog, structural genomics, PSI; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=85.46  E-value=0.94  Score=25.08  Aligned_cols=48  Identities=25%  Similarity=0.502  Sum_probs=39.3

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE--EEECC
Q ss_conf             7579833589999999998199962171798832888700110123217--68878
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE--CWCDG  143 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE--vwldG  143 (307)
                      .-||+|.    +|..-++.+|++|.  ++-||.|++++-..+|--.||.  +|++.
T Consensus       174 ~~KP~~~----~~~~~~~~~~~~~~--~~l~VGD~~~~Di~~A~~~G~~~~~~~~~  223 (260)
T 2gfh_A          174 EEKPAPS----IFYHCCDLLGVQPG--DCVMVGDTLETDIQGGLNAGLKATVWINK  223 (260)
T ss_dssp             SCTTCHH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHTTCSEEEEECT
T ss_pred             CCCCCHH----HHHHHHHHCCCCCC--EEEEEEECCHHHHHHHHHCCCEEEEEECC
T ss_conf             8898699----99999998098976--17999958587699999839929999779


No 15 
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=85.10  E-value=0.41  Score=27.66  Aligned_cols=174  Identities=17%  Similarity=0.123  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHCCCE-----EEECCCCCCCCCCCCHHHH-------------H-HHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             9999999999866958-----9611675433322485789-------------8-7448344016764155788765546
Q gi|254780757|r   15 NIILTLTQYWAQQGCT-----ILQPYDMEVGAGTFHPSTT-------------L-RALGPLSWKAAYVQPSRRPLDGRYA   75 (307)
Q Consensus        15 ~ii~~L~~fW~~~GC~-----i~qpyd~e~GAgT~hp~T~-------------l-r~lg~~pw~~aYvqPsrRP~DgRYG   75 (307)
                      .|+..+-+|..++|.+     ++++.+.|-||--|.+..|             + +.+-.---++-.+-||.|.-+.+-.
T Consensus       249 ~i~~~iR~ff~~~gFlEVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~SPel~~k~ll~~g~~rVfeI~~~FR~E~~~t~  328 (548)
T 3i7f_A          249 ACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTR  328 (548)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSS
T ss_pred             HHHHHHHHHHHHCCCEEEECCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf             99999999999779989888721236767655600011111266763326789999986266323443405664545555


Q ss_pred             CC-CCC--CCEEEE----EE------------------------------------EEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf             67-750--011444----45------------------------------------575798335899999999981999
Q gi|254780757|r   76 EN-PNR--LQHYYQ----FQ------------------------------------VIIKPNPLNLQNLYIESLKAVGID  112 (307)
Q Consensus        76 eN-PNR--lq~y~Q----fQ------------------------------------VilKPsp~niq~lYl~SL~~iGid  112 (307)
                      -+ |-=  |--|..    |.                                    .+.+|.+.-.-+--++-|+..|..
T Consensus       329 rHlpEFT~LE~e~a~~~~~~d~m~~~e~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~eai~~l~~~~~~  408 (548)
T 3i7f_A          329 RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRLTYKEAIEMLRASGET  408 (548)
T ss_dssp             SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCSCEEEEHHHHHHHHHHTTCC
T ss_pred             CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCC
T ss_conf             56875155010077898899999999999999999987646654321000255310135615435699999999972322


Q ss_pred             CCC---------------------CCEEEEECCCC--CCH-------HHHCCCCEEEEECCEEEH-----------HHHH
Q ss_conf             621---------------------71798832888--700-------110123217688787414-----------7778
Q gi|254780757|r  113 PLI---------------------HDVRFVEDNWE--SPT-------LGAWGLGWECWCDGMEIS-----------QFTY  151 (307)
Q Consensus       113 ~~~---------------------hDIrFveDnWE--sPt-------LGAwGlGWEvwldGMEIt-----------QFTY  151 (307)
                      ...                     .|.-||.|-..  +|-       =..+...+|+.++|+||.           |---
T Consensus       409 ~~~~~d~~~~~e~~l~~~i~~~~~~~~~~v~~~P~~~~pf~~~~~~~d~~~a~rfdL~i~G~Ei~nG~~rl~d~~~~~~r  488 (548)
T 3i7f_A          409 IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFLMKR  488 (548)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHHHHH
T ss_pred             CCCHHHCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCHHHHHHH
T ss_conf             35211016389999888888751789889948726429766688999968346899872988971645541889999999


Q ss_pred             HHHHCCCCC-------------CCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             998668257-------------75145678789999999869982113320
Q gi|254780757|r  152 FQQVCGIEC-------------SPISGEITYGLERLAMYVQNVNSVYDIVF  189 (307)
Q Consensus       152 FQQvGGi~c-------------~pv~~EiTYGLERiaMylQ~vdnvyDl~w  189 (307)
                      |...| ++-             -|.++-+.-|+|||.|.+.|.+||-|.+.
T Consensus       489 ~~~~g-~~~~~~~~yl~al~~G~PP~gG~glGlDRLvmll~g~~~Irdvi~  538 (548)
T 3i7f_A          489 CIEKG-VDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTL  538 (548)
T ss_dssp             HHHTT-CCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSS
T ss_pred             HHHCC-CCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHEEEC
T ss_conf             99859-998999999999657999861465389999999818983775861


No 16 
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1
Probab=84.51  E-value=0.49  Score=27.13  Aligned_cols=55  Identities=18%  Similarity=0.201  Sum_probs=32.3

Q ss_pred             CCCCEEEEECCEEEH-----------HHHHHHHHCCCCC-------------CCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             123217688787414-----------7778998668257-------------7514567878999999986998211332
Q gi|254780757|r  133 WGLGWECWCDGMEIS-----------QFTYFQQVCGIEC-------------SPISGEITYGLERLAMYVQNVNSVYDIV  188 (307)
Q Consensus       133 wGlGWEvwldGMEIt-----------QFTYFQQvGGi~c-------------~pv~~EiTYGLERiaMylQ~vdnvyDl~  188 (307)
                      ...-+|+.++|+||.           |..-|..-|. +-             -|.++-+.-|+|||.|.+-|.+||-|.+
T Consensus       333 ~a~rfeL~~~G~El~nG~~el~d~~e~~~~~~~~g~-~~e~~~~fl~al~~G~PP~~G~glGiDRLvm~l~g~~~Irdvi  411 (422)
T 1n9w_A          333 TTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGM-DPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYAR  411 (422)
T ss_dssp             BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTC-CGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGC
T ss_pred             CEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHEEE
T ss_conf             535654558789998012113689999999987498-9899999999966399997457669999999980898676264


No 17 
>1x42_A Hypothetical protein PH0459; haloacid dehalogenase, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} SCOP: c.108.1.1
Probab=83.92  E-value=1.7  Score=23.29  Aligned_cols=47  Identities=28%  Similarity=0.422  Sum_probs=38.5

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf             579833589999999998199962171798832888700110123217-68878
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG  143 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG  143 (307)
                      -||+|    +.|..-++.+|++|  .++-+|+|+=++-..+|.-+||- ||++.
T Consensus       154 ~KP~~----~~~~~~~~~l~~~p--~~~l~vgD~~~~Di~~A~~~G~~~v~v~~  201 (232)
T 1x42_A          154 FKPHP----RIFELALKKAGVKG--EEAVYVGDNPVKDCGGSKNLGMTSILLDR  201 (232)
T ss_dssp             CTTSH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHTTTCEEEEECT
T ss_pred             CCCCH----HHHHHHHHHCCCCH--HHCEEEEECCHHHHHHHHHCCCEEEEECC
T ss_conf             89859----99999999919998--89817765758659999986998999889


No 18 
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis}
Probab=83.10  E-value=1.6  Score=23.30  Aligned_cols=51  Identities=20%  Similarity=0.354  Sum_probs=41.2

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             44557579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   86 QFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        86 QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ...++-||+|.    .|...++.+||+|.  ++-+|-|++++--.||--.|+- ||..
T Consensus       177 ~~~~~~KP~~~----~~~~a~~~lgi~pe--~~l~IGD~~~~DI~~a~~aG~~si~V~  228 (266)
T 3pdw_A          177 QPVFIGKPESI----IMEQAMRVLGTDVS--ETLMVGDNYATDIMAGINAGMDTLLVH  228 (266)
T ss_dssp             CCEECSTTSSH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHHTCEEEEEC
T ss_pred             CCEEECCCCHH----HHHHHHHHHCCCCC--CEEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             41231376347----89998988514754--369982581778999998799699989


No 19 
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=83.05  E-value=1.7  Score=23.25  Aligned_cols=46  Identities=24%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             7579833589999999998199962171798832888700110123217688
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      .=||+|.    .|..-++.+|++|.  ++-+|.|+.++--+||--.||...+
T Consensus       213 ~GKP~p~----~~~~a~~~lgv~p~--e~lmVGD~~~tDI~gA~~aG~~sil  258 (306)
T 2oyc_A          213 VGKPSPY----MFECITENFSIDPA--RTLMVGDRLETDILFGHRCGMTTVL  258 (306)
T ss_dssp             CSTTSTH----HHHHHHHHSCCCGG--GEEEEESCTTTHHHHHHHHTCEEEE
T ss_pred             CCCCCHH----HHHHHHHHCCCCCC--CEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf             1578627----89999986399957--7899917860789999987995999


No 20 
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=82.86  E-value=0.4  Score=27.74  Aligned_cols=59  Identities=24%  Similarity=0.413  Sum_probs=44.1

Q ss_pred             HHCCCCEEEEECCEEEH-----------HHHHHHHHCCCC----------C------CCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             10123217688787414-----------777899866825----------7------75145678789999999869982
Q gi|254780757|r  131 GAWGLGWECWCDGMEIS-----------QFTYFQQVCGIE----------C------SPISGEITYGLERLAMYVQNVNS  183 (307)
Q Consensus       131 GAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~----------c------~pv~~EiTYGLERiaMylQ~vdn  183 (307)
                      ....-.+++-++|+||.           |-.-|.+.|--+          +      -|..+-+--|+|||.|++-|.+|
T Consensus       468 ~~~~~~fDL~~~G~Ei~~Gs~R~~d~~~q~~~~~~~g~~~~e~~~~~~~yl~a~~yG~PPhgG~GlG~DRLvm~ltg~~n  547 (585)
T 1c0a_A          468 NAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDN  547 (585)
T ss_dssp             TCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSC
T ss_pred             CCEEEEEEEECCCEEECCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCC
T ss_conf             64168886402888972401011799999999998599956865579999999766999876274189999999809995


Q ss_pred             EEEEEE
Q ss_conf             113320
Q gi|254780757|r  184 VYDIVF  189 (307)
Q Consensus       184 vyDl~w  189 (307)
                      |-|.+-
T Consensus       548 IRDvi~  553 (585)
T 1c0a_A          548 IRDVIA  553 (585)
T ss_dssp             GGGGSS
T ss_pred             HHEEEC
T ss_conf             760751


No 21 
>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=82.68  E-value=0.24  Score=29.31  Aligned_cols=57  Identities=25%  Similarity=0.404  Sum_probs=37.8

Q ss_pred             CCCCEEEEECCEEEH-----------HHHHHHHH------CCCCC--------------CCCHHHHHHHHHHHHHHHCCC
Q ss_conf             123217688787414-----------77789986------68257--------------751456787899999998699
Q gi|254780757|r  133 WGLGWECWCDGMEIS-----------QFTYFQQV------CGIEC--------------SPISGEITYGLERLAMYVQNV  181 (307)
Q Consensus       133 wGlGWEvwldGMEIt-----------QFTYFQQv------GGi~c--------------~pv~~EiTYGLERiaMylQ~v  181 (307)
                      ..-.+++-++|+||.           |-..|++.      |.-+-              -|..+-+..|||||.|++-|.
T Consensus       409 ~~~~fdl~~~G~Ei~~G~~ri~d~~~q~~~~~~~~~~~~~~~~~~~~~de~yl~a~~yG~pPhgG~glGldRlvm~l~g~  488 (504)
T 1e1o_A          409 ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNS  488 (504)
T ss_dssp             BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTC
T ss_pred             HHEEEEEEECCEEEEECEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCC
T ss_conf             61067775488998643152579999999999999987548660223038999996479998600368899999998269


Q ss_pred             CCEEEEEE
Q ss_conf             82113320
Q gi|254780757|r  182 NSVYDIVF  189 (307)
Q Consensus       182 dnvyDl~w  189 (307)
                      +||-|.+-
T Consensus       489 ~nIRdvi~  496 (504)
T 1e1o_A          489 HTIRDVIL  496 (504)
T ss_dssp             SSGGGTSS
T ss_pred             CHHHHEEC
T ss_conf             70885316


No 22 
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=82.65  E-value=1.5  Score=23.54  Aligned_cols=86  Identities=16%  Similarity=0.150  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEEEEC
Q ss_conf             440167641557887655466775001144445-----5757983358999-------9999998199962171798832
Q gi|254780757|r   56 LSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRFVED  123 (307)
Q Consensus        56 ~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrFveD  123 (307)
                      -|.+.+-.-||+|-..|.||...--|.+-|||.     ++..++|++..+.       +-.-++.|||..       .-=
T Consensus       244 LPlr~~~~s~cfR~EaGs~GkdtrGl~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~i~~~L~lpy-------rvv  316 (421)
T 1ses_A          244 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPY-------RLV  316 (421)
T ss_dssp             CSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCE-------EEE
T ss_pred             CCCEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-------HHH
T ss_conf             5732577447532223344521034433102455777786145430246799999999999986226731-------102


Q ss_pred             CCCCCHHHHCC---CCEEEEECC----EEEHH
Q ss_conf             88870011012---321768878----74147
Q gi|254780757|r  124 NWESPTLGAWG---LGWECWCDG----MEISQ  148 (307)
Q Consensus       124 nWEsPtLGAwG---lGWEvwldG----MEItQ  148 (307)
                      ++.+--||++.   .--|||+-|    .||+-
T Consensus       317 ~~~~~dlg~~a~~~~diE~w~P~~~~~~Evss  348 (421)
T 1ses_A          317 EVATGDMGPGKWRQVDIEVYLPSEGRYRETHS  348 (421)
T ss_dssp             ECCHHHHCTTCSEEEEEEEEETTTTEEEEEEE
T ss_pred             HCCCCCCCHHHHHHCCEEEEECCCCCEEEEEE
T ss_conf             22755677587632140788648896787821


No 23 
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=82.04  E-value=2.9  Score=21.49  Aligned_cols=169  Identities=17%  Similarity=0.242  Sum_probs=97.7

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEECCCCCC--------CCCCCCHH---------------------HHHHHC----CCCCC
Q ss_conf             7999999999999866958961167543--------33224857---------------------898744----83440
Q gi|254780757|r   12 SFQNIILTLTQYWAQQGCTILQPYDMEV--------GAGTFHPS---------------------TTLRAL----GPLSW   58 (307)
Q Consensus        12 ~fq~ii~~L~~fW~~~GC~i~qpyd~e~--------GAgT~hp~---------------------T~lr~l----g~~pw   58 (307)
                      -...+|-.+.+++...|..+...-.+|-        ...--|||                     .-.|.|    ++.|.
T Consensus        54 Pl~~~~~~I~~if~~mGF~~~~gpeIe~~~~NFdaLniP~dHPARd~~DTfYi~~~~lLRtHTS~~q~r~l~~~~~~~p~  133 (294)
T 2rhq_A           54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPV  133 (294)
T ss_dssp             HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf             59999999999997789716458841043057663488998302040451885035203776807789999851568983


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC---CCCHHHHHHHHHHHHHCCCCCCCCCEE-------EEECCCCCC
Q ss_conf             1676415578876554667750011444455757---983358999999999819996217179-------883288870
Q gi|254780757|r   59 KAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK---PNPLNLQNLYIESLKAVGIDPLIHDVR-------FVEDNWESP  128 (307)
Q Consensus        59 ~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK---Psp~niq~lYl~SL~~iGid~~~hDIr-------FveDnWEsP  128 (307)
                      ++.++-.|.|...    .....+-.+||.--++-   .+-.|....--.-++.++-  .+..+|       |+|-.||--
T Consensus       134 ~~~~~G~VyRrD~----iDatH~p~FhQ~Eg~~v~~~~~~~~Lk~~l~~f~~~~f~--~~~~~r~rpsyFPfTePs~Evd  207 (294)
T 2rhq_A          134 KIICPGKVYRRDS----DDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFG--ADREIRLRPSYFPFTEPSVEVD  207 (294)
T ss_dssp             EEEEEEEEECCCC----CBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHC--TTCCEEEEECCBTTEEEEEEEE
T ss_pred             EEEECCCEEECCC----CCHHHCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCCEEE
T ss_conf             8984684772687----873442222230159964787776644378899998706--7745897446585458862267


Q ss_pred             HH----------HHCCCCEEEEE-CCEEEHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             01----------10123217688-787414777899866825775145-6787899999998699821133206
Q gi|254780757|r  129 TL----------GAWGLGWECWC-DGMEISQFTYFQQVCGIECSPISG-EITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       129 tL----------GAwGlGWEvwl-dGMEItQFTYFQQvGGi~c~pv~~-EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                      .-          --|+-||-=++ -||==-.  .+ ...|+|-+..+| -.--|||||||-+-+++++-++ |+
T Consensus       208 v~~~~~~g~~~~v~~~~~WlEi~G~Gmv~P~--VL-~~~Gid~~~~~G~AfGlGlERlAMl~~gI~DIR~f-~~  277 (294)
T 2rhq_A          208 VSCFKCKGKGCNVCKHTGWIEILGAGMVHPN--VL-EMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYF-YT  277 (294)
T ss_dssp             EECSSSTTSCCTTTTTSSEEEEEEEEEECHH--HH-HTTTCCTTTCEEEEEEECHHHHHHHHHTCCCTTHH-HH
T ss_pred             EEEECCCCCCCEECCCCCCEEEEEECCCCHH--HH-HHCCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHH-HH
T ss_conf             7762048987414058874688630342789--99-97299967787999863388999998399758877-62


No 24 
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=81.92  E-value=1.8  Score=22.96  Aligned_cols=88  Identities=11%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHC-CCCCCCCCEE
Q ss_conf             78987448344016764155788765546677500114444557------5798335899999999981-9996217179
Q gi|254780757|r   47 STTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAV-GIDPLIHDVR  119 (307)
Q Consensus        47 ~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~i-Gid~~~hDIr  119 (307)
                      ..+|+.|..+ .+.+.+--+.+.. .+.--+...+.+|+.+.+.      -||+|+    +|...++.+ |++|  .++-
T Consensus       109 ~~~l~~l~~~-~~~~~~tn~~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~----~f~~~~~~l~~~~p--~~~l  180 (238)
T 3ed5_A          109 FDLISNLQQQ-FDLYIVTNGVSHT-QYKRLRDSGLFPFFKDIFVSEDTGFQKPMKE----YFNYVFERIPQFSA--EHTL  180 (238)
T ss_dssp             HHHHHHHHTT-SEEEEEECSCHHH-HHHHHHHTTCGGGCSEEEEGGGTTSCTTCHH----HHHHHHHTSTTCCG--GGEE
T ss_pred             HHHHHHHHHC-CCEEEECCCCHHH-HHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH----HHHHHHHHHCCCCC--CCEE
T ss_conf             9999999838-9876543888999-9999986232000122211010036797199----99999998447898--8679


Q ss_pred             EEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             8832888700110123217-6887
Q gi|254780757|r  120 FVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus       120 FveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||.|+.++--.||...||. ||++
T Consensus       181 ~vGD~~~~Di~~A~~~G~~ti~v~  204 (238)
T 3ed5_A          181 IIGDSLTADIKGGQLAGLDTCWMN  204 (238)
T ss_dssp             EEESCTTTTHHHHHHTTCEEEEEC
T ss_pred             EEEECCHHHHHHHHHCCCEEEEEC
T ss_conf             999796887999998499799989


No 25 
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, structural genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=81.60  E-value=2.5  Score=21.96  Aligned_cols=53  Identities=9%  Similarity=0.152  Sum_probs=41.0

Q ss_pred             EEEEEEEEE-CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             144445575-79833589999999998199962171798832888700110123217688
Q gi|254780757|r   83 HYYQFQVII-KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        83 ~y~QfQVil-KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      .|+.+.+.. ||.|+    .|..-++..|++|  +++-+|+|+.++-..||--+|+..+.
T Consensus       152 ~~fd~~~~~~kP~p~----~~~~~l~~~~~~p--~e~l~VGDs~~~Di~~A~~aG~~~v~  205 (251)
T 2pke_A          152 DLFPRIEVVSEKDPQ----TYARVLSEFDLPA--ERFVMIGNSLRSDVEPVLAIGGWGIY  205 (251)
T ss_dssp             GTCCCEEEESCCSHH----HHHHHHHHHTCCG--GGEEEEESCCCCCCHHHHHTTCEEEE
T ss_pred             CCCHHHHHHCCCCHH----HHHHHHHHCCCCC--CCEEEEEECCHHHHHHHHHHCCEEEE
T ss_conf             530567640345718----9999998636678--74799985878889999991997999


No 26 
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrolase; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=81.53  E-value=1  Score=24.75  Aligned_cols=46  Identities=28%  Similarity=0.502  Sum_probs=38.6

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf             579833589999999998199962171798832888700110123217-68878
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG  143 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG  143 (307)
                      .||+|.    +|..-++.+|++|  +++-||+|. .+-..+|.-.||- ||++.
T Consensus       160 ~KP~p~----~~~~~~~~lg~~p--~e~l~IgDs-~~Di~aA~~aG~~~v~v~~  206 (240)
T 2no4_A          160 YKPDPR----IYQFACDRLGVNP--NEVCFVSSN-AWDLGGAGKFGFNTVRINR  206 (240)
T ss_dssp             CTTSHH----HHHHHHHHHTCCG--GGEEEEESC-HHHHHHHHHHTCEEEEECT
T ss_pred             CCCCHH----HHHHHHHHHCCCC--CCEEEEECC-HHHHHHHHHCCCEEEEECC
T ss_conf             413499----9999999909691--628999888-8889999993996999888


No 27 
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=80.75  E-value=0.96  Score=25.02  Aligned_cols=45  Identities=31%  Similarity=0.606  Sum_probs=38.2

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      .||+|    +.|..-++.+|++|  +++-||+|+. +-..||--+||- ||++
T Consensus       150 ~KP~p----~~f~~~~~~l~~~p--~~~l~VgDs~-~Di~~A~~aG~~~v~v~  195 (232)
T 1zrn_A          150 YKPDN----RVYELAEQALGLDR--SAILFVASNA-WDATGARYFGFPTCWIN  195 (232)
T ss_dssp             CTTSH----HHHHHHHHHHTSCG--GGEEEEESCH-HHHHHHHHHTCCEEEEC
T ss_pred             CCCCH----HHHHHHHHHHCCCC--CCEEEEECCH-HHHHHHHHCCCEEEEEE
T ss_conf             58977----88889999809793--0189896899-99999998499699980


No 28 
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} SCOP: c.108.1.14
Probab=80.46  E-value=2  Score=22.77  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             79833589999999998199962171798832888700110123217688
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      ||+|.    .|...++.+||+|.  ++-+|-|++++--.||--.|+-..+
T Consensus       183 KP~~~----~~~~a~~~~gi~p~--~~l~IGD~~~~Di~~A~~aG~~si~  226 (264)
T 1yv9_A          183 KPKAI----IMERAIAHLGVEKE--QVIMVGDNYETDIQSGIQNGIDSLL  226 (264)
T ss_dssp             TTSHH----HHHHHHHHHCSCGG--GEEEEESCTTTHHHHHHHHTCEEEE
T ss_pred             CCCHH----HHHHHHHHHCCCCC--EEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf             78778----88788998489967--4999928836899999987998999


No 29 
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=79.44  E-value=3.6  Score=20.89  Aligned_cols=58  Identities=24%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             HCCCCEEEEECCEEEH-----------HHHHHHHHCCCC----------------CCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             0123217688787414-----------777899866825----------------7751456787899999998699821
Q gi|254780757|r  132 AWGLGWECWCDGMEIS-----------QFTYFQQVCGIE----------------CSPISGEITYGLERLAMYVQNVNSV  184 (307)
Q Consensus       132 AwGlGWEvwldGMEIt-----------QFTYFQQvGGi~----------------c~pv~~EiTYGLERiaMylQ~vdnv  184 (307)
                      .+...++..++|+||.           |---|...|--+                =-|..+-+--|+|||.|++-|++||
T Consensus       463 ~~a~~fDLv~~G~El~gGsqR~~d~~~q~~~~~~~gl~~~e~~~~~~~yld~~~yG~pPhgGfGlG~dRLvm~ltg~~nI  542 (580)
T 1l0w_A          463 VRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSI  542 (580)
T ss_dssp             CBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSG
T ss_pred             CCEEEEEECCCCEEEEECEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCH
T ss_conf             71259997148789702626337999999999983799056676799999997769998763655899999998089966


Q ss_pred             EEEEE
Q ss_conf             13320
Q gi|254780757|r  185 YDIVF  189 (307)
Q Consensus       185 yDl~w  189 (307)
                      -|.+=
T Consensus       543 Rdvi~  547 (580)
T 1l0w_A          543 REVIA  547 (580)
T ss_dssp             GGGSS
T ss_pred             HEEEC
T ss_conf             63866


No 30 
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str}
Probab=79.14  E-value=1  Score=24.82  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHCCCEEEE-----CCCCCCCCCCC-------------CHHHHHHHCCCCCCEEEEECCCCCCCCCCCC-
Q ss_conf             9999999999866958961-----16754333224-------------8578987448344016764155788765546-
Q gi|254780757|r   15 NIILTLTQYWAQQGCTILQ-----PYDMEVGAGTF-------------HPSTTLRALGPLSWKAAYVQPSRRPLDGRYA-   75 (307)
Q Consensus        15 ~ii~~L~~fW~~~GC~i~q-----pyd~e~GAgT~-------------hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYG-   75 (307)
                      .|+..+-+|..++|.+=..     ..+.|-||--|             .|..+.+.+-.--=++-.+-||.|.-+++-- 
T Consensus       139 ~i~~~iR~f~~~~gf~EV~TP~L~~~~~~g~a~~f~~~~~~~~~~L~~Spel~K~l~~~g~~rvf~i~~~FR~E~~~~~r  218 (429)
T 1wyd_A          139 LALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPF  218 (429)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSS
T ss_pred             HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC
T ss_conf             99999998777438555338643466676422344105159772430389988888653110006750320036787643


Q ss_pred             CCCC
Q ss_conf             6775
Q gi|254780757|r   76 ENPN   79 (307)
Q Consensus        76 eNPN   79 (307)
                      .||-
T Consensus       219 H~pE  222 (429)
T 1wyd_A          219 HLAE  222 (429)
T ss_dssp             CCSE
T ss_pred             CCCC
T ss_conf             4566


No 31 
>3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD superfamily, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=79.10  E-value=2  Score=22.69  Aligned_cols=50  Identities=18%  Similarity=0.262  Sum_probs=41.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             4557579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   87 FQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        87 fQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      .-..-||.|+    .|..-++.+|++|  .++-||.|++++-..||..+||. ||++
T Consensus       152 ~~~~~k~~p~----~~~~~~~~~~~~p--~e~l~VGDs~~~Di~~A~~~G~~~i~v~  202 (234)
T 3ddh_A          152 IEVMSDKTEK----EYLRLLSILQIAP--SELLMVGNSFKSDIQPVLSLGGYGVHIP  202 (234)
T ss_dssp             EEEESCCSHH----HHHHHHHHHTCCG--GGEEEEESCCCCCCHHHHHHTCEEEECC
T ss_pred             EECCCCCCCH----HHHHHHHHHCCCC--CEEEEEECCCHHHHHHHHHCCCEEEEEC
T ss_conf             0104458928----9999999822137--2389995184767999998499899988


No 32 
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=77.08  E-value=4.1  Score=20.42  Aligned_cols=125  Identities=21%  Similarity=0.300  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-CC--CCHHHHHHHHHHHHHCCCCCCCCCEEEEECC----C
Q ss_conf             483440167641557887655466775001144445575-79--8335899999999981999621717988328----8
Q gi|254780757|r   53 LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVII-KP--NPLNLQNLYIESLKAVGIDPLIHDVRFVEDN----W  125 (307)
Q Consensus        53 lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVil-KP--sp~niq~lYl~SL~~iGid~~~hDIrFveDn----W  125 (307)
                      -+++|.+.-.+-.|.|+...   +....+-.++|.--++ ..  +-.+.......-|+.+|+.    +++|.-+.    +
T Consensus       220 r~~~pirlFEiGrVFR~D~~---~D~tH~~~fhQleGlivg~~vdf~dLKg~le~lL~~Lg~~----~~k~r~~~s~~Pf  292 (648)
T 2odr_B          220 KKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKSKY  292 (648)
T ss_dssp             TSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCCTT
T ss_pred             CCCCCEEEEEEEEEECCCCC---CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCEEEECCCCCCC
T ss_conf             79998389987778737874---4243576200478999778768899999999999996788----7389965677899


Q ss_pred             CCCHHHH-------CCCCEE-EEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             8700110-------123217-688787414777899866825775145678789999999869982113320
Q gi|254780757|r  126 ESPTLGA-------WGLGWE-CWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVF  189 (307)
Q Consensus       126 EsPtLGA-------wGlGWE-vwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~w  189 (307)
                      =.|...|       ++-||= |=-=||==-  .-. .-.||+.....  .--|||||||..-+++++-++..
T Consensus       293 ~hPg~ea~V~~~~~~~~~WlEIgg~G~vHP--~VL-k~~GId~~V~A--FGLGLERLAMlk~gi~DIR~l~~  359 (648)
T 2odr_B          293 YTPETQTEVYAYHPKLKEWLEVATFGVYSP--VAL-SKYGIDVPVMN--LGLGVERLAMISGNFADVREMVY  359 (648)
T ss_dssp             BCTTCCEEEEEEETTTTEEEEEEEEEEBCH--HHH-HHTTCCSCEEE--EEEEHHHHHHHHTTCSCHHHHHC
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEECCCCCH--HHH-HHCCCCCCEEE--EEECHHHHHHHHCCCCHHHHHHC
T ss_conf             899115899998167984899980653179--999-86696985799--99638999998739973777607


No 33 
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=76.39  E-value=2.9  Score=21.52  Aligned_cols=48  Identities=19%  Similarity=0.276  Sum_probs=38.3

Q ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE
Q ss_conf             557579833589999999998199962171798832888700110123217-688
Q gi|254780757|r   88 QVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC  141 (307)
Q Consensus        88 QVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl  141 (307)
                      ..+-||+|.    .|..-|+.+||+|  .++-+|.|++++--+||--.||- ||.
T Consensus       178 ~~~~KP~~~----~~~~~l~~~gi~~--~~~l~IGD~l~~DI~~a~~aG~~silV  226 (264)
T 3epr_A          178 VFIGKPNAI----IMNKALEILNIPR--NQAVMVGDNYLTDIMAGINNDIDTLLV  226 (264)
T ss_dssp             EECSTTSHH----HHHHHHHHHTSCG--GGEEEEESCTTTHHHHHHHHTCEEEEE
T ss_pred             EEECCCCHH----HHHHHHHHHCCCC--CCEEEEECCCHHHHHHHHHCCCCEEEE
T ss_conf             653265216----6788899729593--638999589378999999879989998


No 34 
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm, detoxification, magnesium, metal-binding, peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A*
Probab=74.70  E-value=1.7  Score=23.17  Aligned_cols=87  Identities=18%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCCCC---CCCCEEEEEEE------EECCCCHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             8987448344016764155788765546677---50011444455------75798335899999999981999621717
Q gi|254780757|r   48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENP---NRLQHYYQFQV------IIKPNPLNLQNLYIESLKAVGIDPLIHDV  118 (307)
Q Consensus        48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNP---NRlq~y~QfQV------ilKPsp~niq~lYl~SL~~iGid~~~hDI  118 (307)
                      ..|+.|-.+-.+++-+--+......+....-   -.+..|+-+-|      +-||.|    ++|+..++.+|++|  .++
T Consensus       107 ~~l~~l~~~g~~l~i~SN~~~~~~~~~~~~~~~~~~l~~~Fd~i~~S~~vg~~KPdp----~iy~~a~~~lg~~p--~e~  180 (555)
T 3i28_A          107 QAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEP----QIYKFLLDTLKASP--SEV  180 (555)
T ss_dssp             HHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCH----HHHHHHHHHHTCCG--GGE
T ss_pred             HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCEEEEHHCCCCCCCCH----HHHHHHHHHHCCCH--HHE
T ss_conf             999999978994999849974236989887652212687688998830268899999----99999999829986--568


Q ss_pred             EEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             98832888700110123217688
Q gi|254780757|r  119 RFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus       119 rFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      -||+|.-++ -.||..+|+..-+
T Consensus       181 l~v~D~~~~-i~~A~~~G~~~i~  202 (555)
T 3i28_A          181 VFLDDIGAN-LKPARDLGMVTIL  202 (555)
T ss_dssp             EEEESCHHH-HHHHHHHTCEEEE
T ss_pred             EEEECCHHH-HHHHHHCCCEEEE
T ss_conf             999289889-9999974993998


No 35 
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), structural genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Probab=74.23  E-value=2.7  Score=21.74  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||+|+    .|+.-++.+|++|.  ++-||+|. .+-..||--.|.- ||++
T Consensus       187 KP~P~----~y~~a~~~lgv~p~--~~v~VgDs-~~Di~aA~~AGm~tv~V~  231 (253)
T 2g80_A          187 KTETQ----SYANILRDIGAKAS--EVLFLSDN-PLELDAAAGVGIATGLAS  231 (253)
T ss_dssp             TTCHH----HHHHHHHHHTCCGG--GEEEEESC-HHHHHHHHTTTCEEEEEC
T ss_pred             CCCHH----HHHHHHHHHCCCCC--CEEEEECC-HHHHHHHHHCCCEEEEEE
T ss_conf             99979----99999998589944--28999789-999999998599899996


No 36 
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomics, PSI, protein structure initiative; HET: G1P; 2.00A {Escherichia coli K12} SCOP: c.108.1.2
Probab=73.06  E-value=5.2  Score=19.71  Aligned_cols=89  Identities=20%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             8987448344016764155788765546677500114444557------5798335899999999981999621717988
Q gi|254780757|r   48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVRFV  121 (307)
Q Consensus        48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIrFv  121 (307)
                      .++..+-...+.++-+--+-+....+.-+.-..+.+|+-+-+.      -||.|+    .|..-++.+|++|.  ++-||
T Consensus        98 ~l~~~l~~~~~~~~~~tn~~~~~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~----~~~~~~~~l~~~~~--~~l~I  171 (206)
T 2b0c_A           98 AIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEAR----IYQHVLQAEGFSPS--DTVFF  171 (206)
T ss_dssp             HHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHH----HHHHHHHHHTCCGG--GEEEE
T ss_pred             HHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHHHCCCCC--EEEEE
T ss_conf             9999999779976542488799999999855550343213433112233323099----99999999287987--18999


Q ss_pred             ECCCCCCHHHHCCCCEE-EEECC
Q ss_conf             32888700110123217-68878
Q gi|254780757|r  122 EDNWESPTLGAWGLGWE-CWCDG  143 (307)
Q Consensus       122 eDnWEsPtLGAwGlGWE-vwldG  143 (307)
                      +|+- +--.+|--+|+. ||++.
T Consensus       172 gDs~-~di~~A~~~G~~ti~v~~  193 (206)
T 2b0c_A          172 DDNA-DNIEGANQLGITSILVKD  193 (206)
T ss_dssp             ESCH-HHHHHHHTTTCEEEECCS
T ss_pred             ECCH-HHHHHHHHCCCEEEEECC
T ss_conf             6898-889999985998999999


No 37 
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=72.30  E-value=5.4  Score=19.59  Aligned_cols=132  Identities=18%  Similarity=0.162  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCC---CCCCCCC--------------------------HHHHHHH-----CCCCCCEEE
Q ss_conf             99999999986695896116754---3332248--------------------------5789874-----483440167
Q gi|254780757|r   16 IILTLTQYWAQQGCTILQPYDME---VGAGTFH--------------------------PSTTLRA-----LGPLSWKAA   61 (307)
Q Consensus        16 ii~~L~~fW~~~GC~i~qpyd~e---~GAgT~h--------------------------p~T~lr~-----lg~~pw~~a   61 (307)
                      +|.--.++..++|..-+.|-++-   +--||-+                          |.|-+-+     -..-|.+.+
T Consensus       214 Li~y~ld~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~i~~~~~~l~Li~TaEvpl~~~~~~eil~~~~LP~k~~  293 (484)
T 3lss_A          214 LVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYA  293 (484)
T ss_dssp             HHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEE
T ss_pred             HHHHHHHHHHHCCCEEECCCHHHHHHHCCCCCCCCCCHHHCEEEECCCCCEEEECCCCCCHHHHHHHCEEHHHCCCCCCC
T ss_conf             99999997651697441486322222037645776520104031026764246224666366666430102322876563


Q ss_pred             EECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHH-------HHHHHHHHHHCCCCCCCCCEEEEECCCCCCH
Q ss_conf             641557887655466775001144445-----5757983358-------9999999998199962171798832888700
Q gi|254780757|r   62 YVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNL-------QNLYIESLKAVGIDPLIHDVRFVEDNWESPT  129 (307)
Q Consensus        62 YvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~ni-------q~lYl~SL~~iGid~~~hDIrFveDnWEsPt  129 (307)
                      =+-||.|+.-|.||...--|.+-|||.     ++.+|.....       .+..-+=++.|||-.+.-++       -|--
T Consensus       294 ~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE~f~~~~p~~~~s~~~~e~~~~~~e~~~~~L~lpyrvv~~-------~sgd  366 (484)
T 3lss_A          294 GMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNI-------CSGA  366 (484)
T ss_dssp             EEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEEC-------CTTT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-------CCCC
T ss_conf             018888854434466778705761134489999846861222899999999999999854870699740-------5877


Q ss_pred             HHHCC---CCEEEEECCE----EE---HHHHHHHH
Q ss_conf             11012---3217688787----41---47778998
Q gi|254780757|r  130 LGAWG---LGWECWCDGM----EI---SQFTYFQQ  154 (307)
Q Consensus       130 LGAwG---lGWEvwldGM----EI---tQFTYFQQ  154 (307)
                      ||++.   .--|||+-|.    ||   |-+|=||-
T Consensus       367 lg~~a~~k~DiE~W~P~~~~y~EvsS~Snc~DyQs  401 (484)
T 3lss_A          367 LNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQS  401 (484)
T ss_dssp             CCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHH
T ss_pred             CCCCHHHEEEEEEEECCCCCEEEEEEECCCCCHHH
T ss_conf             78223346888988667797577877425523766


No 38 
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=69.52  E-value=4.8  Score=19.97  Aligned_cols=48  Identities=21%  Similarity=0.324  Sum_probs=37.6

Q ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE
Q ss_conf             557579833589999999998199962171798832888700110123217-688
Q gi|254780757|r   88 QVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC  141 (307)
Q Consensus        88 QVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl  141 (307)
                      +..-||+|.    .|..-++.+|++|  +++-+|-|++++--.||--.|+. ||.
T Consensus       172 ~~~~KP~~~----~~~~a~~~lgv~~--~e~~mVGDs~~~DI~~a~~aG~~si~V  220 (250)
T 2c4n_A          172 FYVGKPSPW----IIRAALNKMQAHS--EETVIVGDNLRTDILAGFQAGLETILV  220 (250)
T ss_dssp             EECSTTSTH----HHHHHHHHHTCCG--GGEEEEESCTTTHHHHHHHTTCEEEEE
T ss_pred             CCCCCCCHH----HHHHHHHHHCCCC--CCEEEECCCHHHHHHHHHHCCCCEEEE
T ss_conf             102477278----8888888743586--644897168066799999879989998


No 39 
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=69.12  E-value=1.4  Score=23.82  Aligned_cols=142  Identities=23%  Similarity=0.329  Sum_probs=83.1

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCC---CHHHHHHHHHHHHHCCCCCCCCCEEEEEC----CCC
Q ss_conf             83440167641557887655466775001144445575798---33589999999998199962171798832----888
Q gi|254780757|r   54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPN---PLNLQNLYIESLKAVGIDPLIHDVRFVED----NWE  126 (307)
Q Consensus        54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPs---p~niq~lYl~SL~~iGid~~~hDIrFveD----nWE  126 (307)
                      .|-|.++-.+--|.|...   .....++-.+||.--++--.   -.|.....-.=|+.+|..    |++|.-+    -.-
T Consensus       202 ~~~Piri~s~GrVyRrD~---aiDatH~~~FhQvEGlvVd~~vs~~dLkg~L~~fl~~~f~~----~~k~R~rpsyFPFt  274 (534)
T 2du3_A          202 LPLPIKLFSIDRCFRREQ---GEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFE----NFRFRKDEKRSKYY  274 (534)
T ss_dssp             SCSSEEEEEEEEEECCCT---TCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTCC----EEEEEECTTCCTTB
T ss_pred             CCCCEEEECCCCCCCCCC---CCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCEEEECCCCCCCC
T ss_conf             899858961562223565---56543174105710488669888999999999999997687----75797468879999


Q ss_pred             CCH-----------H----HHCCCCE-EEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             700-----------1----1012321-76887874147778998668257751456787899999998699821133206
Q gi|254780757|r  127 SPT-----------L----GAWGLGW-ECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       127 sPt-----------L----GAwGlGW-EvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                      .|+           +    -.|+-|| ||-=-||==-  ..+. -.|||..  ..-.--|||||||-.-++++|-+|...
T Consensus       275 ePs~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P--~VL~-~~GIdy~--g~AfGlGlERLAML~ygI~DIR~Ly~p  349 (534)
T 2du3_A          275 IPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSP--TALA-EYDIPYP--VMNLGLGVERLAMILYGYDDVRKMVYP  349 (534)
T ss_dssp             CTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCH--HHHH-TTTCCSC--EEEEEEEHHHHHHHHTTCSCHHHHHCT
T ss_pred             CCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCH--HHHH-HCCCCCC--EEEEEECHHHHHHHHCCCCHHHHHHCC
T ss_conf             9953479999505886555575896699967746687--8886-4698987--799865288999987199668875177


Q ss_pred             CCCCCCCCCCHHHHHHHH
Q ss_conf             888788311062447469
Q gi|254780757|r  191 AIEGQNVLYGDIFAQSEQ  208 (307)
Q Consensus       191 ~~~~~~vtYGdif~q~E~  208 (307)
                      +.. ....+.|+-....+
T Consensus       350 ~~~-~~~~~sD~~~~~~~  366 (534)
T 2du3_A          350 QIH-GEIKLSDLDIAREI  366 (534)
T ss_dssp             TTT-TCCCCCHHHHHHHC
T ss_pred             CCC-CCCCCCHHHHHHHC
T ss_conf             666-10026679998508


No 40 
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=68.39  E-value=4.1  Score=20.42  Aligned_cols=88  Identities=9%  Similarity=0.004  Sum_probs=53.1

Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-------EEECCCCHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             789874483440167641557887655466775001144445-------5757983358999999999819996217179
Q gi|254780757|r   47 STTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-------VIIKPNPLNLQNLYIESLKAVGIDPLIHDVR  119 (307)
Q Consensus        47 ~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-------VilKPsp~niq~lYl~SL~~iGid~~~hDIr  119 (307)
                      ..+|..|....++++-+--+-++. -+.-..-.-+..++.+-       ..-||+|    +.|+.-++.+|++|.  ++-
T Consensus       136 ~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~~~~~~~~~~~~~d~~~~~KP~p----~~~~~~~~~~~~~p~--~~l  208 (261)
T 1yns_A          136 VPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDILELVDGHFDTKIGHKVES----ESYRKIADSIGCSTN--NIL  208 (261)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCGGGCSEEECGGGCCTTCH----HHHHHHHHHHTSCGG--GEE
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCCHH--HEE
T ss_conf             999999975488446526886899-9999975143444442322234565568787----999999999488923--589


Q ss_pred             EEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             8832888700110123217-6887
Q gi|254780757|r  120 FVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus       120 FveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||+|+. +--.||.-.|+- ||++
T Consensus       209 ~igD~~-~Dv~~A~~aG~~tv~v~  231 (261)
T 1yns_A          209 FLTDVT-REASAAEEADVHVAVVV  231 (261)
T ss_dssp             EEESCH-HHHHHHHHTTCEEEEEC
T ss_pred             EEECCH-HHHHHHHHCCCEEEEEE
T ss_conf             895688-99999998599799996


No 41 
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=68.22  E-value=0.54  Score=26.80  Aligned_cols=72  Identities=14%  Similarity=0.074  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCCE-----EEECCCCCCCCCCCC---------------HHHHHHHC-CCCCCEEEEECCCCCCCCCC
Q ss_conf             9999999999866958-----961167543332248---------------57898744-83440167641557887655
Q gi|254780757|r   15 NIILTLTQYWAQQGCT-----ILQPYDMEVGAGTFH---------------PSTTLRAL-GPLSWKAAYVQPSRRPLDGR   73 (307)
Q Consensus        15 ~ii~~L~~fW~~~GC~-----i~qpyd~e~GAgT~h---------------p~T~lr~l-g~~pw~~aYvqPsrRP~DgR   73 (307)
                      .++..+.+|..++|++     ++++.+.+-||..|-               |..++..| -.-==++--+-||.|--|.|
T Consensus       179 ~i~~~iR~fl~~~gFlEVeTP~L~~~~~~~~a~~f~~~~~~~~~~~~L~~Spql~~k~lmv~g~~rvfqI~~~FR~E~~~  258 (493)
T 3a74_A          179 LIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIS  258 (493)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCB
T ss_pred             HHHHHHHHHHHHCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECEECCCCCC
T ss_conf             99999999998659733317764100378666552015446886743367821578988874105478970003578788


Q ss_pred             CCCCCCCCCEEEEEEEE
Q ss_conf             46677500114444557
Q gi|254780757|r   74 YAENPNRLQHYYQFQVI   90 (307)
Q Consensus        74 YGeNPNRlq~y~QfQVi   90 (307)
                      -    -|+--++|.-.=
T Consensus       259 ~----~h~pEFT~le~e  271 (493)
T 3a74_A          259 T----RHNPEFTMLELY  271 (493)
T ss_dssp             T----TBCSEEEEEEEE
T ss_pred             C----CCCCHHHHHHHH
T ss_conf             7----886066877888


No 42 
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens}
Probab=67.64  E-value=4.5  Score=20.16  Aligned_cols=45  Identities=18%  Similarity=0.190  Sum_probs=34.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||+|    +.|...++.+|++|  .++-||+|. .+--.+|.-.|.. ||.+
T Consensus       126 ~KP~p----~~~~~~~~~l~i~~--~e~i~igDs-~~di~aA~~aGi~~i~v~  171 (205)
T 3m9l_A          126 PKPHP----GGLLKLAEAWDVSP--SRMVMVGDY-RFDLDCGRAAGTRTVLVN  171 (205)
T ss_dssp             CTTSS----HHHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEEEECS
T ss_pred             CCCCH----HHHHHHHHHCCCCC--CCEEEEECC-HHHHHHHHHCCCEEEEEC
T ss_conf             68877----99999998444351--432899567-877999998699899989


No 43 
>3e58_A Putative beta-phosphoglucomutase; structural genomics, PSI-2, protein structure initiative; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=65.73  E-value=5.3  Score=19.63  Aligned_cols=45  Identities=24%  Similarity=0.419  Sum_probs=35.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEEC
Q ss_conf             5798335899999999981999621717988328887001101232176887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwld  142 (307)
                      .||.|+    .|..-++.+|++|.  ++-||+|++ +--.+|-..|+-+|.-
T Consensus       144 ~Kp~~~----~~~~~~~~~g~~~~--~~l~VgD~~-~Di~aA~~aG~~~i~v  188 (214)
T 3e58_A          144 SKPNPE----IYLTALKQLNVQAS--RALIIEDSE-KGIAAGVAADVEVWAI  188 (214)
T ss_dssp             CTTSSH----HHHHHHHHHTCCGG--GEEEEECSH-HHHHHHHHTTCEEEEE
T ss_pred             CCCCHH----HHHHHHHHCCCCCC--CEEEEECCH-HHHHHHHHCCCEEEEE
T ss_conf             676569----99999998299936--379995699-9999999859989998


No 44 
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis W83}
Probab=65.28  E-value=3.6  Score=20.86  Aligned_cols=45  Identities=27%  Similarity=0.485  Sum_probs=36.3

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||+|+    +|...++.+|++|.  ++-||+|. ++--.+|--+||. ||.+
T Consensus       149 ~KP~~~----~~~~~~~~l~i~p~--e~l~VgDs-~~di~~A~~~G~~ti~v~  194 (211)
T 2i6x_A          149 YKPNED----IFLEMIADSGMKPE--ETLFIDDG-PANVATAERLGFHTYCPD  194 (211)
T ss_dssp             CTTSHH----HHHHHHHHHCCCGG--GEEEECSC-HHHHHHHHHTTCEEECCC
T ss_pred             CCCHHH----HHHHHHHHCCCCHH--HEEEECCC-HHHHHHHHHCCCEEEEEC
T ss_conf             786066----99999998399931--37888079-888999998599899989


No 45 
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=64.83  E-value=6  Score=19.25  Aligned_cols=44  Identities=30%  Similarity=0.327  Sum_probs=35.5

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             7579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      .-||+|+    +|+.-|+.+|+     +.-||.|+=++--.||-.+||. ||+|
T Consensus       148 ~~KP~~~----~f~~~l~~~~~-----~~~~IgD~~~~Di~~A~~~G~~~v~v~  192 (220)
T 2zg6_A          148 AVKPNPK----IFGFALAKVGY-----PAVHVGDIYELDYIGAKRSYVDPILLD  192 (220)
T ss_dssp             -----CC----HHHHHHHHHCS-----SEEEEESSCCCCCCCSSSCSEEEEEBC
T ss_pred             CCCCCHH----HHHHHHHHCCC-----CEEEEEECCHHHHHHHHHCCCEEEEEC
T ss_conf             9999999----99999998499-----989997085879999998399899989


No 46 
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1
Probab=64.59  E-value=0.76  Score=25.76  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEE-----CCC---CCCCCCC----C-------------CHHHHHH-HCCCCCCEEEEECCCC
Q ss_conf             99999999999866958961-----167---5433322----4-------------8578987-4483440167641557
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTILQ-----PYD---MEVGAGT----F-------------HPSTTLR-ALGPLSWKAAYVQPSR   67 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i~q-----pyd---~e~GAgT----~-------------hp~T~lr-~lg~~pw~~aYvqPsr   67 (307)
                      ..|+..+-+|..++|.+-+.     |..   ...|+++    |             .|.-.++ +|..--=++-.+-||.
T Consensus        19 s~i~~~iR~ff~~~~f~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~~k~~l~~g~~~vf~I~~~F   98 (294)
T 1nnh_A           19 TKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI   98 (294)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEECEE
T ss_conf             99999999999988999984873456677767765567663563567896675157888889899873025644650456


Q ss_pred             CCC
Q ss_conf             887
Q gi|254780757|r   68 RPL   70 (307)
Q Consensus        68 RP~   70 (307)
                      |--
T Consensus        99 R~E  101 (294)
T 1nnh_A           99 RLE  101 (294)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             478


No 47 
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase- like superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=64.25  E-value=5.2  Score=19.69  Aligned_cols=44  Identities=25%  Similarity=0.450  Sum_probs=35.6

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             579833589999999998199962171798832888700110123217688
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      -||.|.    +|..-++.+|++|  +++-||+|+.. --.+|--+||...+
T Consensus       140 ~KP~~~----~y~~~~~~~~~~p--~~~v~igD~~~-di~~A~~~G~~~i~  183 (200)
T 3cnh_A          140 MKPNPA----MYRLGLTLAQVRP--EEAVMVDDRLQ-NVQAARAVGMHAVQ  183 (200)
T ss_dssp             CTTCHH----HHHHHHHHHTCCG--GGEEEEESCHH-HHHHHHHTTCEEEE
T ss_pred             CCCCHH----HHHHHHHHHCCCH--HHEEEECCCHH-HHHHHHHCCCEEEE
T ss_conf             898699----9999999819695--57788848999-99999985998999


No 48 
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=64.03  E-value=4.6  Score=20.11  Aligned_cols=88  Identities=14%  Similarity=0.099  Sum_probs=50.9

Q ss_pred             HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE------EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             98744834401676415578876554667750011444455------757983358999999999819996217179883
Q gi|254780757|r   49 TLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQV------IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVE  122 (307)
Q Consensus        49 ~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQV------ilKPsp~niq~lYl~SL~~iGid~~~hDIrFve  122 (307)
                      +|+.|-..-++++-+-.+.++.=-+.-+. ..+.+|+..=+      .-||+|+.    |...++.+|+++.  ++-||+
T Consensus        26 ~l~~lk~~g~~~~i~Tn~~~~~~~~~l~~-~~l~~~fd~i~~~~~~~~~KP~p~~----~~~~~~~~~~~~~--~~~~ig   98 (137)
T 2pr7_A           26 LLAAAKKNGVGTVILSNDPGGLGAAPIRE-LETNGVVDKVLLSGELGVEKPEEAA----FQAAADAIDLPMR--DCVLVD   98 (137)
T ss_dssp             HHHHHHHTTCEEEEEECSCCGGGGHHHHH-HHHTTSSSEEEEHHHHSCCTTSHHH----HHHHHHHTTCCGG--GEEEEE
T ss_pred             HHHHHHHCCCEEEEECCCCHHHHHHHHHH-CCCHHHEEEEEEECCCCCCCCCHHH----HHHHHHHHCCCCC--EEEEEE
T ss_conf             99999987995999889998999999998-4986464699970467887863443----0048887433543--368981


Q ss_pred             CCCCCCHHHHCCCCEE-EEECCE
Q ss_conf             2888700110123217-688787
Q gi|254780757|r  123 DNWESPTLGAWGLGWE-CWCDGM  144 (307)
Q Consensus       123 DnWEsPtLGAwGlGWE-vwldGM  144 (307)
                      |+. +-..+|.-+||. ||.+..
T Consensus        99 D~~-~di~~a~~~G~~ti~~~~~  120 (137)
T 2pr7_A           99 DSI-LNVRGAVEAGLVGVYYQQF  120 (137)
T ss_dssp             SCH-HHHHHHHHHTCEEEECSCH
T ss_pred             CCH-HHHHHHHHCCCEEEEECCC
T ss_conf             688-8899999829989999997


No 49 
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=63.46  E-value=0.97  Score=24.97  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=38.7

Q ss_pred             HCCCCEEEEECCEEEH-----------HHHHHHHHC------CCC--------------CCCCHHHHHHHHHHHHHHHCC
Q ss_conf             0123217688787414-----------777899866------825--------------775145678789999999869
Q gi|254780757|r  132 AWGLGWECWCDGMEIS-----------QFTYFQQVC------GIE--------------CSPISGEITYGLERLAMYVQN  180 (307)
Q Consensus       132 AwGlGWEvwldGMEIt-----------QFTYFQQvG------Gi~--------------c~pv~~EiTYGLERiaMylQ~  180 (307)
                      .+.-.+|.-++|+||.           |--.|.+.+      +-+              =-|..+-+..|||||.|++-|
T Consensus       413 ~~~~~fdL~i~G~Ei~~G~~r~~d~~~q~~~~~~~~~~~~~~~~~~~~~de~yl~a~~yG~PPhgG~glGldRLvm~l~g  492 (521)
T 3bju_A          413 GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTD  492 (521)
T ss_dssp             TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTT
T ss_pred             CEEEEECEEECCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHC
T ss_conf             80465157757999986789937999999999999999853767411005999999548999740135899999999828


Q ss_pred             CCCEEEEEE
Q ss_conf             982113320
Q gi|254780757|r  181 VNSVYDIVF  189 (307)
Q Consensus       181 vdnvyDl~w  189 (307)
                      .+||-|.+.
T Consensus       493 ~~nIRdvi~  501 (521)
T 3bju_A          493 SNNIKEVLL  501 (521)
T ss_dssp             CSSGGGSCS
T ss_pred             CCCHHHCCC
T ss_conf             982888061


No 50 
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=63.26  E-value=8  Score=18.34  Aligned_cols=38  Identities=18%  Similarity=0.083  Sum_probs=28.0

Q ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf             55757983358999999999819996217179883288870
Q gi|254780757|r   88 QVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESP  128 (307)
Q Consensus        88 QVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsP  128 (307)
                      .|||||||.-.||+|..-|..+ +....-.+|+||  |+++
T Consensus        93 ~vVlK~s~t~~~Evygs~LAr~-Lglp~PemRlIe--~~~e  130 (342)
T 1cja_A           93 VFIVKRSTNIESETFCSLLCMR-LGLHAPKVRVVS--SNSE  130 (342)
T ss_dssp             EEEEECCTTHHHHHHHHHHHHH-HTCCCCCEEEEE--SSSH
T ss_pred             EEEEECCCCHHHHHHHHHHHHH-HCCCCCCEEEEE--CCCH
T ss_conf             7999658823999999999999-599999669971--5768


No 51 
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=63.14  E-value=0.81  Score=25.53  Aligned_cols=71  Identities=10%  Similarity=0.078  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEE-----CCCCCCCCC---------------------CCCHHHHHH-HCCCCCCEEEEECCC
Q ss_conf             99999999999866958961-----167543332---------------------248578987-448344016764155
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTILQ-----PYDMEVGAG---------------------TFHPSTTLR-ALGPLSWKAAYVQPS   66 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i~q-----pyd~e~GAg---------------------T~hp~T~lr-~lg~~pw~~aYvqPs   66 (307)
                      ..||..+-+|+.++|.+=.+     +.+. -||+                     +-.|.-.+. ++-.---++-.+-||
T Consensus        40 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-~ga~~~pf~~~~~~~~~~~~~~~yL~~SpQl~lq~l~~~g~~rVf~I~p~  118 (345)
T 3a5y_A           40 AAIMAEIRRFFADRGVLEVETPCMSQATV-TDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRS  118 (345)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSEESSCC-CCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEECC
T ss_conf             99999999999888978987986478898-76456616887236666678577755487999999996799872798345


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             78876554667750011444455
Q gi|254780757|r   67 RRPLDGRYAENPNRLQHYYQFQV   89 (307)
Q Consensus        67 rRP~DgRYGeNPNRlq~y~QfQV   89 (307)
                      .|--+.+    +-++--++|.-.
T Consensus       119 FR~E~~~----~~H~~EFtmlE~  137 (345)
T 3a5y_A          119 FRNEEMG----RYHNPEFTMLEW  137 (345)
T ss_dssp             ECCCCCB----TTBCSEEEEEEE
T ss_pred             CCCCCCC----CCCCCCEEEEEE
T ss_conf             3269989----885763455344


No 52 
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant 1; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 1.90A {Ehrlichia chaffeensis}
Probab=61.95  E-value=7.4  Score=18.57  Aligned_cols=44  Identities=30%  Similarity=0.433  Sum_probs=34.9

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE
Q ss_conf             57983358999999999819996217179883288870011012321768
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECW  140 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvw  140 (307)
                      -||.|    +.|+.-++.+|++|. .++-||+|.. +-..+|-.+|+-..
T Consensus       158 ~KP~~----~~~~~~~~~~~~~p~-~~~~~VgDs~-~Di~aA~~~G~~~v  201 (231)
T 3kzx_A          158 IKPSP----EPVLAALTNINIEPS-KEVFFIGDSI-SDIQSAIEAGCLPI  201 (231)
T ss_dssp             CTTSS----HHHHHHHHHHTCCCS-TTEEEEESSH-HHHHHHHHTTCEEE
T ss_pred             CCCCH----HHHHHHHHHCCCCHH-HCEEEEECCH-HHHHHHHHCCCEEE
T ss_conf             78989----999999999198935-7459993888-88999998499899


No 53 
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=61.64  E-value=4.8  Score=19.92  Aligned_cols=45  Identities=24%  Similarity=0.410  Sum_probs=33.7

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf             7579833589999999998199962171798832888700110123217-68878
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG  143 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG  143 (307)
                      .-||+|+    .|+.-++.+|  |  +++-||+|. .+--.||--+||. ||++.
T Consensus       126 ~~KP~p~----~~~~~~~~l~--~--~~~l~igD~-~~Di~~A~~aG~~~i~v~~  171 (201)
T 2w43_A          126 EYKPSPK----VYKYFLDSIG--A--KEAFLVSSN-AFDVIGAKNAGMRSIFVNR  171 (201)
T ss_dssp             CCTTCHH----HHHHHHHHHT--C--SCCEEEESC-HHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCHH----HHHHHHHHCC--C--CCEEEECCC-HHHHHHHHHHCCEEEEECC
T ss_conf             7898599----9999998425--5--650796475-7899999990993999899


No 54 
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=60.93  E-value=1.1  Score=24.46  Aligned_cols=60  Identities=17%  Similarity=0.128  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHCCCEEE-----ECCCCCCCCCCCC-------------HHHHHHHC-CCCCCEEEEECCCCCCCCCCC
Q ss_conf             999999999986695896-----1167543332248-------------57898744-834401676415578876554
Q gi|254780757|r   15 NIILTLTQYWAQQGCTIL-----QPYDMEVGAGTFH-------------PSTTLRAL-GPLSWKAAYVQPSRRPLDGRY   74 (307)
Q Consensus        15 ~ii~~L~~fW~~~GC~i~-----qpyd~e~GAgT~h-------------p~T~lr~l-g~~pw~~aYvqPsrRP~DgRY   74 (307)
                      .|+..+.+|..++|.+=+     .+.+.|-+|-.|+             |.-++..| -.--=++-.+-||.|.-+++=
T Consensus       183 ~i~~~iR~ff~~~gFlEVeTPiL~~~~~~g~~~~f~~~~~~~~~yL~~Spel~~k~l~~~g~~rvfei~~~FR~E~~~t  261 (487)
T 1eov_A          183 GVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNT  261 (487)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCC
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCCCC
T ss_conf             9999987310149889998854245675203431330002765303350699999987524556537630130566555


No 55 
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A*
Probab=60.73  E-value=2.3  Score=22.27  Aligned_cols=129  Identities=20%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCCCEEEEECC--CCCC
Q ss_conf             8344016764155788765546677500114444557579---8335899999999981999621717988328--8870
Q gi|254780757|r   54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKP---NPLNLQNLYIESLKAVGIDPLIHDVRFVEDN--WESP  128 (307)
Q Consensus        54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKP---sp~niq~lYl~SL~~iGid~~~hDIrFveDn--WEsP  128 (307)
                      ...|+++.++--+.|+.+-..    ..+-.+||.--++.-   +-.+....--.=++.++.  .+..+||...=  .-.|
T Consensus       190 ~~pp~r~i~~GrVyR~d~~D~----tH~p~FhQ~Egl~vd~~it~~~Lk~~l~~~~~~~f~--~~~~~R~rp~yFPfTeP  263 (350)
T 1b7y_A          190 HTPPFRIVVPGRVFRFEQTDA----THEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG--PDSKVRFQPVYFPFVEP  263 (350)
T ss_dssp             CCSSEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC--SSCCEEEEECCBTTEEE
T ss_pred             CCCCEEEEECCCCCCCCCCCC----CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCC
T ss_conf             499816983676546899887----558754688999813002279889999999997418--98648757887898888


Q ss_pred             HHH--HC---CCCE-EEEECCEEEHHHHHHHHHC------CCCCC--CCHH-HHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             011--01---2321-7688787414777899866------82577--5145-6787899999998699821133206
Q gi|254780757|r  129 TLG--AW---GLGW-ECWCDGMEISQFTYFQQVC------GIECS--PISG-EITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       129 tLG--Aw---GlGW-EvwldGMEItQFTYFQQvG------Gi~c~--pv~~-EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                      ++-  .+   +=|| ||-=-||==.+  .++.+|      |++-.  -.+| -.--|||||||-.-+++++-++-=|
T Consensus       264 s~Evdi~~~~~~~WiEi~G~Gmv~p~--vl~~~g~~~~~~g~~~~~~~~~g~AfG~GleRlaMl~~gi~DiR~~~~~  338 (350)
T 1b7y_A          264 GAQFAVWWPEGGKWLELGGAGMVHPK--VFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGG  338 (350)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEECHH--HHHHHHHHHHHTTCCCCCTTCEEEEEEEEHHHHHHHHTTCCCGGGTTSC
T ss_pred             CCEEEEEECCCCEEEEEECCCCCCHH--HHHHCCCCHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHHHCC
T ss_conf             73499996879956898056377789--9975589766517885456675999864388999997399768877517


No 56 
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=60.69  E-value=8.3  Score=18.21  Aligned_cols=47  Identities=19%  Similarity=0.384  Sum_probs=38.3

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             7579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      +-||+|.    ++..-++.+|++|  .++-+|-|+.++--.||-..||. ||..
T Consensus       177 ~~KP~p~----~~~~~~~~lgi~p--~~~~~VGD~~~~DI~~a~~aG~~si~V~  224 (259)
T 2ho4_A          177 VGKPEKT----FFLEALRDADCAP--EEAVMIGDDCRDDVDGAQNIGMLGILVK  224 (259)
T ss_dssp             CSTTSHH----HHHHHGGGGTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEES
T ss_pred             ECCCCHH----HHHHHHHHHCCCC--CCEEEECCCHHHHHHHHHHCCCCEEEEC
T ss_conf             2068469----9999999824485--2104754773778999998799699989


No 57 
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics; 2.10A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.6
Probab=59.43  E-value=7  Score=18.76  Aligned_cols=43  Identities=16%  Similarity=0.140  Sum_probs=35.4

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE
Q ss_conf             57983358999999999819996217179883288870011012321768
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECW  140 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvw  140 (307)
                      -||.|+    .|+.-++.+|++|  .++-||+|. .+--.+|.-+|+.++
T Consensus       139 ~Kp~~~----~~~~~~~~~~~~p--~~~l~vgD~-~~di~~A~~aG~~~i  181 (207)
T 2go7_A          139 RKPSPE----AATYLLDKYQLNS--DNTYYIGDR-TLDVEFAQNSGIQSI  181 (207)
T ss_dssp             CTTSSH----HHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHHTCEEE
T ss_pred             CCCCHH----HHHHHHHHCCCCH--HHEEEECCC-HHHHHHHHHCCCEEE
T ss_conf             898699----9999999909693--028888689-899999998499499


No 58 
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, HAD-superfamily hydrolase, putative B-phosphoglucomutase, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=57.94  E-value=8.9  Score=18.00  Aligned_cols=44  Identities=27%  Similarity=0.484  Sum_probs=33.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||.|    +.|+..++.+|++|  +++-||+|. .+--.+|-..|.- ||..
T Consensus       143 KP~~----~~~~~~~~~l~v~p--~~~l~IgD~-~~Di~aA~~~G~~~i~v~  187 (229)
T 2fdr_A          143 KPKP----DIFLHGAAQFGVSP--DRVVVVEDS-VHGIHGARAAGMRVIGFT  187 (229)
T ss_dssp             TTSS----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHTTCEEEEEC
T ss_pred             CCCH----HHHHHHHHHCCCCC--CCEEEEECC-HHHHHHHHHCCCEEEEEC
T ss_conf             9879----99999999739997--626998058-878999998699899984


No 59 
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli O157} SCOP: c.108.1.6
Probab=57.56  E-value=8.9  Score=18.01  Aligned_cols=44  Identities=20%  Similarity=0.410  Sum_probs=35.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             579833589999999998199962171798832888700110123217688
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      -||+|    +.|+.-++.+|++|  +++-||.|. .+--.+|--+|+.+..
T Consensus       149 ~Kp~~----~~~~~~~~~l~~~~--~~~l~VgDs-~~Di~aA~~~G~~~i~  192 (226)
T 1te2_A          149 SKPHP----QVYLDCAAKLGVDP--LTCVALEDS-VNGMIASKAARMRSIV  192 (226)
T ss_dssp             CTTST----HHHHHHHHHHTSCG--GGEEEEESS-HHHHHHHHHTTCEEEE
T ss_pred             CCCCH----HHHHHHHHHHCCCC--HHEEEEECC-HHHHHHHHHCCCEEEE
T ss_conf             89889----99999999929791--126999629-9899999993998999


No 60 
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus}
Probab=57.26  E-value=10  Score=17.63  Aligned_cols=61  Identities=20%  Similarity=0.196  Sum_probs=45.4

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHH-------HHHHHHHHHHHCCCCCC
Q ss_conf             83440167641557887655466775001144445-----575798335-------89999999998199962
Q gi|254780757|r   54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLN-------LQNLYIESLKAVGIDPL  114 (307)
Q Consensus        54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~n-------iq~lYl~SL~~iGid~~  114 (307)
                      ..-|.+.+=+-||+|..-|.||.+.--|.+-+||-     ++.+|++++       +.+++-.-++.|||-..
T Consensus       351 ~~LP~~~~~~s~cfR~Eag~~g~dtrGL~RvhQF~KvE~~~~~~~~~e~s~~~~~~~l~~~e~i~~~L~lpyr  423 (536)
T 3err_A          351 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYR  423 (536)
T ss_dssp             GGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             6589765546982455556557544213331343148999853651345799999999999999742488559


No 61 
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=56.17  E-value=10  Score=17.51  Aligned_cols=127  Identities=22%  Similarity=0.294  Sum_probs=70.0

Q ss_pred             HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-C--CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC-
Q ss_conf             4483440167641557887655466775001144445575-7--98335899999999981999621717988328887-
Q gi|254780757|r   52 ALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVII-K--PNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWES-  127 (307)
Q Consensus        52 ~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVil-K--Psp~niq~lYl~SL~~iGid~~~hDIrFveDnWEs-  127 (307)
                      .-++.|.+.-.+-.|.|+...   +....+-.++|.-.++ .  .+-.+..-.--.-|+.+|+.    +++|.-+.=.+ 
T Consensus       219 ~r~~~plrlFEiGrVFR~D~~---~D~tHl~~fhQleGlvvg~~vdf~DLKg~le~lL~~lg~~----~vkfr~~~s~~P  291 (665)
T 2odr_A          219 NKKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKSK  291 (665)
T ss_dssp             TTSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCCT
T ss_pred             HCCCCCEEEEEEEEEECCCCC---CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCEEEECCCCCC
T ss_conf             579998589977788747875---5465586114899999867567899999999999996788----718996577789


Q ss_pred             ---CHHH-------HCCCCEEEEEC-CEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             ---0011-------01232176887-874147778998668257751456787899999998699821133206
Q gi|254780757|r  128 ---PTLG-------AWGLGWECWCD-GMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       128 ---PtLG-------AwGlGWEvwld-GMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                         |..-       .++-||=-.+. || |.. .- ..--||+.....  .--|||||||..-+++++-++...
T Consensus       292 f~hPg~eaeV~~~~~k~~~WlEIgg~G~-vhP-~V-Lk~~GId~~V~A--FGLGLERLAMlk~gI~DIR~L~~p  360 (665)
T 2odr_A          292 YYTPETQTEVYAYHPKLKEWLEVATFGV-YSP-VA-LSKYGIDVPVMN--LGLGVERLAMISGNFADVREMVYP  360 (665)
T ss_dssp             TBCTTCCEEEEEEETTTTEEEEEEEEEE-BCH-HH-HHHTTCCSCEEE--EEEEHHHHHHHHTTCSCHHHHHCG
T ss_pred             CCCCCEEEEEEEEECCCCEEEEEEECCC-CCH-HH-HHHCCCCCCEEE--EEECHHHHHHHHCCCCHHHHHHCC
T ss_conf             9899405899999456983999992443-079-99-987697985799--997589999987399768876166


No 62 
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- 2, protein structure initiative; HET: MSE; 1.72A {Bacteroides vulgatus atcc 8482}
Probab=55.93  E-value=10  Score=17.54  Aligned_cols=45  Identities=24%  Similarity=0.311  Sum_probs=35.1

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||+|    +.|...++.+|++|.  ++-||.|+ .+--.+|-..|.- ||+.
T Consensus       164 ~KP~p----~~~~~a~~~l~~~~~--~~i~VGDs-~~Di~aA~~aG~~~I~v~  209 (247)
T 3dv9_A          164 GKPNP----EPYLMALKKGGFKPN--EALVIENA-PLGVQAGVAAGIFTIAVN  209 (247)
T ss_dssp             CTTSS----HHHHHHHHHHTCCGG--GEEEEECS-HHHHHHHHHTTSEEEEEC
T ss_pred             CCCCH----HHHHHHHHHHCCCCC--EEEEEECC-HHHHHHHHHCCCEEEEEC
T ss_conf             79988----999999999289986--38999067-877999999599899988


No 63 
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii OT3}
Probab=54.91  E-value=11  Score=17.37  Aligned_cols=45  Identities=31%  Similarity=0.575  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||+|+    .|..-++.+|++|.  ++-||.|+.++--.+|--.|+- ||+.
T Consensus       150 KP~~~----~~~~~~~~~~~~p~--~~v~IgD~~~~Di~~A~~~G~~~i~v~  195 (241)
T 2hoq_A          150 KPHPK----IFKKALKAFNVKPE--EALMVGDRLYSDIYGAKRVGMKTVWFR  195 (241)
T ss_dssp             TTCHH----HHHHHHHHHTCCGG--GEEEEESCTTTTHHHHHHTTCEEEEEC
T ss_pred             CCCHH----HHHHHHHHHCCCHH--HEEEECCCCHHHHHHHHHCCCEEEEEC
T ss_conf             98289----99999998258805--615753584766999998699899986


No 64 
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=54.87  E-value=1.6  Score=23.35  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHCCCEE-----EECCCCCCCCCCCCHHH-------------HHHHCC-CCCCEEEEECCCCCCCCCCC
Q ss_conf             999999999998669589-----61167543332248578-------------987448-34401676415578876554
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTI-----LQPYDMEVGAGTFHPST-------------TLRALG-PLSWKAAYVQPSRRPLDGRY   74 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i-----~qpyd~e~GAgT~hp~T-------------~lr~lg-~~pw~~aYvqPsrRP~DgRY   74 (307)
                      -.|+..+.+|..++|.+=     +.+.+.|-||-.|.+..             ++..|= .--=++--+-||.|-.|.+=
T Consensus       141 s~i~~~iR~fl~~~gF~EVeTPiL~~~~~eg~a~~f~~~~~~~~~~L~~Spel~lk~l~~~G~~rvfei~~~FR~E~~~~  220 (438)
T 3nem_A          141 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT  220 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf             99999999987547967997764424466655444663136887535038568878876514885289733014455777


Q ss_pred             CCCCCC
Q ss_conf             667750
Q gi|254780757|r   75 AENPNR   80 (307)
Q Consensus        75 GeNPNR   80 (307)
                      --+++-
T Consensus       221 ~rh~~e  226 (438)
T 3nem_A          221 TRHLNE  226 (438)
T ss_dssp             TTCCSE
T ss_pred             CCCCCC
T ss_conf             554423


No 65 
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=53.82  E-value=11  Score=17.25  Aligned_cols=45  Identities=24%  Similarity=0.336  Sum_probs=34.7

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||.|    +.|..-++.+|++|.  ++-||.|. .+--.+|--.|+- ||++
T Consensus       144 ~KP~p----~~~~~~~~~~g~~p~--~~l~vgD~-~~di~aA~~aG~~~i~v~  189 (221)
T 2wf7_A          144 SKPAP----DIFIAAAHAVGVAPS--ESIGLEDS-QAGIQAIKDSGALPIGVG  189 (221)
T ss_dssp             CTTSS----HHHHHHHHHTTCCGG--GEEEEESS-HHHHHHHHHHTCEEEEES
T ss_pred             CCCCH----HHHHHHHHHHCCCHH--HEEEECCC-HHHHHHHHHCCCEEEEEC
T ss_conf             68888----999999999397867--87988289-889999998599999999


No 66 
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=52.09  E-value=1.6  Score=23.35  Aligned_cols=61  Identities=18%  Similarity=0.135  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHCCCEE-----EECCCCCCCCCCCCH-------------HHHHHHCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             999999999998669589-----611675433322485-------------7898744834401676415578876554
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTI-----LQPYDMEVGAGTFHP-------------STTLRALGPLSWKAAYVQPSRRPLDGRY   74 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i-----~qpyd~e~GAgT~hp-------------~T~lr~lg~~pw~~aYvqPsrRP~DgRY   74 (307)
                      ..|+..+-+|..++|.+-     +++.+.|-+|--|.+             .-.++.+-..-=++-++-||.|--+++=
T Consensus       160 s~i~~~iR~f~~~~gF~EVeTP~L~~~~~eg~~~~f~~~~~~~~~~L~~spql~kq~~~~g~~rvf~i~~~fR~E~~~~  238 (456)
T 3m4p_A          160 SEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRT  238 (456)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCC
T ss_pred             HHHHHHHHHHHCCCCEEEECCCEECCCCCCCHHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCEEEECCCEECCCCCC
T ss_conf             9999999862035636885297672546643121354322211132038788751233430465056224033366531


No 67 
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=47.19  E-value=5.4  Score=19.55  Aligned_cols=96  Identities=11%  Similarity=0.068  Sum_probs=61.3

Q ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC----CCCHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             57898744834401676415578876554667750011444455757----98335899999999981999621717988
Q gi|254780757|r   46 PSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK----PNPLNLQNLYIESLKAVGIDPLIHDVRFV  121 (307)
Q Consensus        46 p~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK----Psp~niq~lYl~SL~~iGid~~~hDIrFv  121 (307)
                      ...+|..|-....+++-+-.+++..--.--.....+..|+..-|+--    +.++.--+.|+.-++.+|++|...++-||
T Consensus       117 ~~e~L~~L~~~g~~~~i~t~~~~~~~~~~~~~~~~l~~~f~~~v~~~~~~v~~~KP~~~~~~~~~~~l~~~p~~~~~v~v  196 (250)
T 3l5k_A          117 AEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVF  196 (250)
T ss_dssp             HHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHHTTSSCEECTTCTTCCSCTTSTHHHHHHHHTSSSCCCGGGEEEE
T ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             99999999987997022127865888888876304353445478426542103576438999999994859862238997


Q ss_pred             ECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             32888700110123217-6887
Q gi|254780757|r  122 EDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus       122 eDnWEsPtLGAwGlGWE-vwld  142 (307)
                      +|.. +-..+|-..|+- ||+.
T Consensus       197 gDs~-~Di~aA~~aG~~~i~v~  217 (250)
T 3l5k_A          197 EDAP-NGVEAALAAGMQVVMVP  217 (250)
T ss_dssp             ESSH-HHHHHHHHTTCEEEECC
T ss_pred             CCCH-HHHHHHHHCCCEEEEEC
T ss_conf             6878-87999998699899988


No 68 
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.3
Probab=45.35  E-value=12  Score=16.95  Aligned_cols=89  Identities=15%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             578987448344016764155788765546677500114444557------57983358999999999819996217179
Q gi|254780757|r   46 PSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVR  119 (307)
Q Consensus        46 p~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIr  119 (307)
                      -..+|..|..+...++.+-.+.+..- ..-++ -.+.+|+.+=+.      -||+|+    .|..-++.+|+++    .-
T Consensus        87 ~~~~L~~L~~~g~~~~v~sn~~~~~~-~~l~~-~~l~~~fd~i~~~~~~~~~KP~~~----~~~~~~~~~~~~~----~l  156 (190)
T 2fi1_A           87 VSDLLEDISNQGGRHFLVSHRNDQVL-EILEK-TSIAAYFTEVVTSSSGFKRKPNPE----SMLYLREKYQISS----GL  156 (190)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCTHHH-HHHHH-TTCGGGEEEEECGGGCCCCTTSCH----HHHHHHHHTTCSS----EE
T ss_pred             HHHHHHHHHHCCEEEEEECCCCCCCC-CCHHC-CCCCCCCCCEECCCCCCCCCCCHH----HHHHHHHHCCCCC----EE
T ss_conf             99999998745813899537864320-10001-366433352331333578898779----9999999769997----69


Q ss_pred             EEECCCCCCHHHHCCCCEE-EEECCEE
Q ss_conf             8832888700110123217-6887874
Q gi|254780757|r  120 FVEDNWESPTLGAWGLGWE-CWCDGME  145 (307)
Q Consensus       120 FveDnWEsPtLGAwGlGWE-vwldGME  145 (307)
                      ||+|. .+--.+|--+||. ||.++-+
T Consensus       157 ~VgDs-~~di~aA~~~G~~~i~v~~~~  182 (190)
T 2fi1_A          157 VIGDR-PIDIEAGQAAGLDTHLFTSIV  182 (190)
T ss_dssp             EEESS-HHHHHHHHHTTCEEEECSCHH
T ss_pred             EECCC-HHHHHHHHHCCCEEEEECCCC
T ss_conf             99079-999999998699799999988


No 69 
>3f7c_A Protein of unknown function (DUF416); YP_958225.1, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=44.49  E-value=15  Score=16.25  Aligned_cols=61  Identities=21%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             85006653233553013828999999999878883875017889999999999999999999854516
Q gi|254780757|r  238 LKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG  305 (307)
Q Consensus       238 le~~LP~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~  305 (307)
                      ++...|...+-...-|+||-|-|.--|.+++.+.++..    +.   +..|-.++...-..|++..++
T Consensus        76 lE~~iPd~~dfd~yGvyPA~DAc~AL~~~L~~~l~~~~----~~---a~~iS~lS~~TVa~~iE~~~~  136 (200)
T 3f7c_A           76 LETLCPNVDEYDAYGVYPAFDFCQLLEQALLNRLNPNK----HR---ATEASQLATRTVMDFVEMSEG  136 (200)
T ss_dssp             HHHHCCCGGGCCSTTHHHHHHHHHHHHHHHHHHHCTTS----CC---HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCH----HH---HHHHHHHHHHHHHHHHHHHCC
T ss_conf             98729990430150562899999999999999876887----88---999999999999999997446


No 70 
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=41.59  E-value=6.2  Score=19.15  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCCCCCCCEEEE---EEEEE---CCCCHHHHHHH
Q ss_conf             78876554667750011444---45575---79833589999
Q gi|254780757|r   67 RRPLDGRYAENPNRLQHYYQ---FQVII---KPNPLNLQNLY  102 (307)
Q Consensus        67 rRP~DgRYGeNPNRlq~y~Q---fQVil---KPsp~niq~lY  102 (307)
                      +.-.|=||||||.-=--.|.   +.+++   .+|-.|+.|+-
T Consensus       176 ~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~qGKeLSYNNllDad  217 (464)
T 1zcz_A          176 REDLQLRYGENPHEKAFVYGKPAFEILHEGKTISFNNILDAE  217 (464)
T ss_dssp             EECCCCSCSSSTTSCEEEESCCSEEEECSSSCCCHHHHHHHH
T ss_pred             HCCCCCCCCCCHHHCCEEECCCCHHHHCCCCCCCCCCHHHHH
T ss_conf             224677689993331807554318775268887715366289


No 71 
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=39.68  E-value=17  Score=15.93  Aligned_cols=43  Identities=30%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EE
Q ss_conf             579833589999999998199962171798832888700110123217-68
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CW  140 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vw  140 (307)
                      -||.|+    .|..-++.+|++|  .++-||.|. ++--.+|--.|.- ||
T Consensus       139 ~Kp~~~----~~~~~~~~~~~~p--~~~~~VGDs-~~Di~~A~~aG~~~i~  182 (216)
T 2pib_A          139 GKPDPE----IYLLVLERLNVVP--EKVVVFEDS-KSGVEAAKSAGIERIY  182 (216)
T ss_dssp             CTTSTH----HHHHHHHHHTCCG--GGEEEEECS-HHHHHHHHHTTCCEEE
T ss_pred             CCCCHH----HHHHHHHHCCCCC--CCEEEECCC-HHHHHHHHHCCCCEEE
T ss_conf             899689----9999999739882--431798178-8789999986995899


No 72 
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=35.61  E-value=21  Score=15.31  Aligned_cols=45  Identities=20%  Similarity=0.129  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||+|.-    +...++.+|+++  .++-+|-|++.+--.||--.|+. ||.+
T Consensus       195 KP~~~~----~~~~~~~~~~~~--~e~v~vGD~~~~DI~~a~~aGi~tv~V~  240 (271)
T 1vjr_A          195 KPNPLV----VDVISEKFGVPK--ERMAMVGDRLYTDVKLGKNAGIVSILVL  240 (271)
T ss_dssp             TTSTHH----HHHHHHHHTCCG--GGEEEEESCHHHHHHHHHHHTCEEEEES
T ss_pred             CCCHHH----HHHHHHHHHHCC--CCCEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             998689----999998620011--1343655882578999998799599989


No 73 
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=35.51  E-value=21  Score=15.30  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=67.8

Q ss_pred             HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH---HHHHHHHHCCCCCCCCCEEEE--ECCC
Q ss_conf             74483440167641557887655466775001144445575798335899---999999981999621717988--3288
Q gi|254780757|r   51 RALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN---LYIESLKAVGIDPLIHDVRFV--EDNW  125 (307)
Q Consensus        51 r~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~---lYl~SL~~iGid~~~hDIrFv--eDnW  125 (307)
                      ..-++.|.+.-.+-.|.|+...   +....+-.++|.--++--.--++-+   .--.-|+.+|+.    +++|.  +...
T Consensus       218 ~~r~~~piRlFEiGrVFR~D~i---~DatHl~efhQleGlivg~~Vdf~DLKgiLE~lL~~Lg~~----~vkfr~~~s~~  290 (685)
T 2odr_D          218 MNKKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKS  290 (685)
T ss_dssp             TTTSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCC
T ss_pred             HHCCCCCEEEEEEEEEEECCCC---CCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCC----CEEEEECCCCC
T ss_conf             8479998489964677705775---4454576314589999967747999999999999986788----73999666778


Q ss_pred             C--CCHHH-------HCCCCEE-EEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             8--70011-------0123217-6887874147778998668257751456787899999998699821133206
Q gi|254780757|r  126 E--SPTLG-------AWGLGWE-CWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       126 E--sPtLG-------AwGlGWE-vwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                      .  .|..-       .++-||= |--=||==-  .-. .--||+.....-|  -|||||||..-+++++-++...
T Consensus       291 Pf~hPg~eaeV~~~~~~~~~WlEIgg~G~vhP--~VL-k~~GId~~V~AFG--LGLERLAMlk~gI~DIR~L~~p  360 (685)
T 2odr_D          291 KYYTPETQTEVYAYHPKLKEWLEVATFGVYSP--VAL-SKYGIDVPVMNLG--LGVERLAMISGNFADVREMVYP  360 (685)
T ss_dssp             TTBCTTCCEEEEEEETTTTEEEEEEEEEEBCH--HHH-HHTTCCSCEEEEE--EEHHHHHHHHTTCSCHHHHHCG
T ss_pred             CCCCCCEEEEEEEECCCCCEEEEEEECCCCCH--HHH-HHCCCCCCEEEEE--ECHHHHHHHHCCCCHHHHHCCC
T ss_conf             88799502799998067983899980665079--999-8769798579999--7789999987399737765156


No 74 
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.48  E-value=21  Score=15.30  Aligned_cols=132  Identities=20%  Similarity=0.251  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCC-----CCCCCC--------------------------CHHHHH---HHCC--CCCC
Q ss_conf             999999999986695896116754-----333224--------------------------857898---7448--3440
Q gi|254780757|r   15 NIILTLTQYWAQQGCTILQPYDME-----VGAGTF--------------------------HPSTTL---RALG--PLSW   58 (307)
Q Consensus        15 ~ii~~L~~fW~~~GC~i~qpyd~e-----~GAgT~--------------------------hp~T~l---r~lg--~~pw   58 (307)
                      -+|.--.++..++|..-+.|=++=     .|.|-+                          .|-|-+   ..|.  .-|.
T Consensus       224 ALi~f~ld~l~~~Gy~~v~pP~iV~~~~~~gtGqlPkfe~~~~~~~~~~~~ddl~LipTAEvpL~~~~~~eil~~~~LPi  303 (501)
T 1wle_A          224 GLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPI  303 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSE
T ss_pred             HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCC
T ss_conf             99999999755259889924355016677554248434312277740443222001032234532023432032000871


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHH-------HHHHHHHHCCCCCCCCCEEEEECCCC
Q ss_conf             167641557887655466775001144445-----575798335899-------99999998199962171798832888
Q gi|254780757|r   59 KAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQN-------LYIESLKAVGIDPLIHDVRFVEDNWE  126 (307)
Q Consensus        59 ~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~-------lYl~SL~~iGid~~~hDIrFveDnWE  126 (307)
                      +.+=+-||.|.--| +|....-|.+-|||.     ++.+|+.++..+       ..-+-|+.|||-...-++       -
T Consensus       304 k~~a~s~CFR~EAG-~GkdtrGl~RvHQF~KVE~f~~~~p~~e~s~~~~e~~l~~~e~il~~L~LpyRvv~~-------~  375 (501)
T 1wle_A          304 RMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDM-------P  375 (501)
T ss_dssp             EEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEC-------C
T ss_pred             CCCCCCCCCCCCCC-CCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-------C
T ss_conf             14312773055634-456776722566214268999836870133999999999999998644885499871-------6


Q ss_pred             CCHHHHCC---CCEEEEECCE----EE---HHHHHHHH
Q ss_conf             70011012---3217688787----41---47778998
Q gi|254780757|r  127 SPTLGAWG---LGWECWCDGM----EI---SQFTYFQQ  154 (307)
Q Consensus       127 sPtLGAwG---lGWEvwldGM----EI---tQFTYFQQ  154 (307)
                      +--||++-   .--|||+-|.    ||   |-+|=||-
T Consensus       376 sgDLg~~a~kkyDiE~W~P~~~~y~EvsS~Snc~DfQa  413 (501)
T 1wle_A          376 TQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQS  413 (501)
T ss_dssp             GGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHH
T ss_pred             CCCCCHHHHHEEEEEEEECCCCCEEEEEEEECCCCHHH
T ss_conf             77767434445768998558897677887703133866


No 75 
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6
Probab=33.55  E-value=22  Score=15.08  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=32.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE
Q ss_conf             5798335899999999981999621717988328887001101232176
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC  139 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv  139 (307)
                      -||.|+    .|..-++.+|++|  .++-||+|. .+--.+|--.|..+
T Consensus       137 ~KP~~~----~~~~~~~~~~~~p--~~~i~IgD~-~~Di~~A~~aGi~~  178 (209)
T 2hdo_A          137 RKPDPL----PLLTALEKVNVAP--QNALFIGDS-VSDEQTAQAANVDF  178 (209)
T ss_dssp             CTTSSH----HHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEE
T ss_pred             CCCHHH----HHHHHHHHHCCCH--HHEEEEECC-HHHHHHHHHCCCEE
T ss_conf             475299----9999999809692--028999089-88999999849919


No 76 
>2q9r_A Protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.91A {Shewanella baltica OS155}
Probab=33.46  E-value=23  Score=15.07  Aligned_cols=61  Identities=18%  Similarity=0.310  Sum_probs=44.5

Q ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             85006653233553013828999999999878883875017889999999999999999999854516
Q gi|254780757|r  238 LKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG  305 (307)
Q Consensus       238 le~~LP~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~  305 (307)
                      ++...|...+-...-|+||.|-|.--|.+++.+..+..    +   -+..|-.++...-..|++..++
T Consensus        77 lE~~~Pd~~d~d~yGvyPA~DAc~AL~~lL~~l~~~~~----~---~a~~iS~lS~~TVa~fie~~~~  137 (200)
T 2q9r_A           77 LEDNTPEPADFEAYGVYPAMDAVVAISTLLGAIQGKIE----E---DIVNISKLSSSTVANYIEAISD  137 (200)
T ss_dssp             HHHTCCCGGGCCSTTHHHHHHHHHHHHHHHHHHHHTCH----H---HHHTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCCHHCCHHCCHHHHHHHHHHHHHHHHHHCCCH----H---HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99748892110150643899999999999998737888----9---9999999999999999998556


No 77 
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=32.89  E-value=23  Score=15.01  Aligned_cols=81  Identities=23%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE-----EECCCCHHHH-------HHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             834401676415578876554667750011444455-----7579833589-------9999999981999621717988
Q gi|254780757|r   54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQV-----IIKPNPLNLQ-------NLYIESLKAVGIDPLIHDVRFV  121 (307)
Q Consensus        54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQV-----ilKPsp~niq-------~lYl~SL~~iGid~~~hDIrFv  121 (307)
                      ..-|.+.+=+-||.|+.-|.||....-|.+-|||.-     +.+  |+++.       ++..+-++.|||..     |-|
T Consensus       248 ~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~--~~~s~~~~~~~~~~~~~~~~~L~l~~-----rvv  320 (425)
T 2dq3_A          248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH--PDTSYDELEKLVKDAEEVLQLLGLPY-----RVV  320 (425)
T ss_dssp             TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC--GGGHHHHHHHHHHHHHHHHHHHTCCE-----EEE
T ss_pred             HHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECC--CHHHHHHHHHHHHHHHHHHHHCCCCC-----EEE
T ss_conf             54884034537877866554576777515432100232466417--33589999999999999999716870-----899


Q ss_pred             ECCCCCCHHHHCC---CCEEEEECC
Q ss_conf             3288870011012---321768878
Q gi|254780757|r  122 EDNWESPTLGAWG---LGWECWCDG  143 (307)
Q Consensus       122 eDnWEsPtLGAwG---lGWEvwldG  143 (307)
                      +=  -+--||++.   .-=|||.-|
T Consensus       321 ~~--~~~dlg~~~~~~~DiE~W~P~  343 (425)
T 2dq3_A          321 EL--CTGDLGFSAAKTYDIEVWFPS  343 (425)
T ss_dssp             EC--CTTTCCTTCSEEEEEEEEEGG
T ss_pred             EE--CCCCCCCCCCEEECEEEEECC
T ss_conf             96--788888764257340777230


No 78 
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.77  E-value=23  Score=14.99  Aligned_cols=81  Identities=20%  Similarity=0.214  Sum_probs=51.9

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEEEE
Q ss_conf             3440167641557887655466775001144445-----5757983358999-------999999819996217179883
Q gi|254780757|r   55 PLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRFVE  122 (307)
Q Consensus        55 ~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrFve  122 (307)
                      .-|.+.+=+-||.|+.-|.||...--|.+-|||.     ++.+|.  +.-+.       -.+=|+.|||-.+.-+     
T Consensus       270 ~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe--~s~~~~e~~~~~~~~i~~~L~lpyrvv~-----  342 (455)
T 2dq0_A          270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE--ESWEWHEKIIRNAEELFQELEIPYRVVN-----  342 (455)
T ss_dssp             TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT--THHHHHHHHHHHHHHHHHHTTCCEEEEE-----
T ss_pred             HCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCC--CCHHHHHHHHHHHHHHHHHCCCCEEEEE-----
T ss_conf             789202465897886555578764012201221426899834897--3199999999999999997599658988-----


Q ss_pred             CCCCCCHHHHC---CCCEEEEECCE
Q ss_conf             28887001101---23217688787
Q gi|254780757|r  123 DNWESPTLGAW---GLGWECWCDGM  144 (307)
Q Consensus       123 DnWEsPtLGAw---GlGWEvwldGM  144 (307)
                        =-+--||+.   -.--|||+-|.
T Consensus       343 --~~s~dlg~~a~~k~DiE~w~P~~  365 (455)
T 2dq0_A          343 --ICTGDLGYVAAKKYDIEAWMPGQ  365 (455)
T ss_dssp             --CCGGGSCSSCSEEEEEEEEETTT
T ss_pred             --ECCCCCCCCCCEEEEEEEEECCC
T ss_conf             --13766787712189999885577


No 79 
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=29.76  E-value=11  Score=17.30  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=57.8

Q ss_pred             CCCEEEEECC-CCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH-------HHHHHHH-HCCCCCCCCCEEEEEC-C-
Q ss_conf             4401676415-57887655466775001144445575798335899-------9999999-8199962171798832-8-
Q gi|254780757|r   56 LSWKAAYVQP-SRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN-------LYIESLK-AVGIDPLIHDVRFVED-N-  124 (307)
Q Consensus        56 ~pw~~aYvqP-srRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~-------lYl~SL~-~iGid~~~hDIrFveD-n-  124 (307)
                      -|.+.+=+.+ |||-.-|-+ ....|+..+.|---+.=-+|+.+.+       .|.+-+. .+|+..     |-|.+ + 
T Consensus       343 LPlk~~~~s~~~fR~E~g~~-~Gl~Rv~eF~~~E~~~~~t~e~~~e~~~~~l~~~~~if~~~L~L~~-----r~v~~~~~  416 (522)
T 2cja_A          343 IPVKVFDRSGTSHRYESGGI-HGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEW-----RKARVTPW  416 (522)
T ss_dssp             CSEEEEECSSEEECCCSSSC-CCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCCE-----EEEEC---
T ss_pred             CCHHHHHCCCEEEEECCCCC-CCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCE-----EEECCCCC
T ss_conf             24888740402687457787-7550246778643999956888999999999999999999709845-----99325654


Q ss_pred             -------CCCCHHHHC-CCCEEEEEC-------CEEEHHHHHHHH--HCCCCCC------CCHHHHHHHHHHHHHHH
Q ss_conf             -------887001101-232176887-------874147778998--6682577------51456787899999998
Q gi|254780757|r  125 -------WESPTLGAW-GLGWECWCD-------GMEISQFTYFQQ--VCGIECS------PISGEITYGLERLAMYV  178 (307)
Q Consensus       125 -------WEsPtLGAw-GlGWEvwld-------GMEItQFTYFQQ--vGGi~c~------pv~~EiTYGLERiaMyl  178 (307)
                             |+...-++. -..-|+|+.       |.||+.+.|..+  .-.++++      ..++=...|+||+...+
T Consensus       417 ~~~~~~~~~~~~~~~~~~yd~E~~lP~~~~~~k~~ev~si~~~gd~~skrf~ik~~~~~~v~~~c~GiGleR~i~al  493 (522)
T 2cja_A          417 FMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQSGDELWSGCSGVGLERWAAVF  493 (522)
T ss_dssp             -------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEETTCCCEEEEEEEEEHHHHHHHH
T ss_pred             CCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             45665551123356212402388542567788718998662643426373097389999899937672999999999


No 80 
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum}
Probab=29.53  E-value=26  Score=14.62  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=33.9

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      .||.|    ++|...++.+|++|  .++-||+|. .+-..+|.-+|+- ||..
T Consensus       141 ~KP~~----~~~~~~l~~~~~~p--~~~l~VgDs-~~Di~aA~~~Gi~ti~v~  186 (226)
T 3mc1_A          141 LSTKE----DVIRYAMESLNIKS--DDAIMIGDR-EYDVIGALKNNLPSIGVT  186 (226)
T ss_dssp             SCSHH----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHTTTCCEEEES
T ss_pred             CCCCH----HHHHHHHHHCCCCC--CCCEEECCC-HHHHHHHHHCCCEEEEEC
T ss_conf             69889----99999999703486--546275267-777999998699699988


No 81 
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=29.41  E-value=21  Score=15.28  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=16.3

Q ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf             5789874483440167641557887655
Q gi|254780757|r   46 PSTTLRALGPLSWKAAYVQPSRRPLDGR   73 (307)
Q Consensus        46 p~T~lr~lg~~pw~~aYvqPsrRP~DgR   73 (307)
                      --.+++.+++..|. |.+.|+||..-|.
T Consensus        81 Eilll~~~~~~~w~-al~k~~kk~k~G~  107 (345)
T 1wdi_A           81 EILLVRERSPGLWE-ALLGPARKAPPGT  107 (345)
T ss_dssp             EEEECBCC-------CCBCCCSCCCSCE
T ss_pred             EEEEEECCCCCCEE-EEECCCCCCCCCC
T ss_conf             99986325787304-5303556789898


No 82 
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophosphate phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=29.35  E-value=26  Score=14.60  Aligned_cols=47  Identities=23%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             7579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      .-||+|    +.|...++.+|+++  +++-+|-|++.+--.||--.|+. ||.+
T Consensus       188 ~~Kp~~----~~~~~~~~~~~~~~--~~~~~VGD~~~~Di~~Ak~aG~~ti~v~  235 (271)
T 2x4d_A          188 VGKPSP----EFFKSALQAIGVEA--HQAVMIGDDIVGDVGGAQRCGMRALQVR  235 (271)
T ss_dssp             ESTTCH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEES
T ss_pred             CCCCCH----HHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHCCCEEEEEC
T ss_conf             567887----99999998718886--3268975894778999998799499988


No 83 
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2}
Probab=29.22  E-value=26  Score=14.59  Aligned_cols=127  Identities=22%  Similarity=0.297  Sum_probs=69.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCH---HHHHHHHHHHHHCCCCCCCCCEEE--EECCCC-
Q ss_conf             48344016764155788765546677500114444557579833---589999999998199962171798--832888-
Q gi|254780757|r   53 LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPL---NLQNLYIESLKAVGIDPLIHDVRF--VEDNWE-  126 (307)
Q Consensus        53 lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~---niq~lYl~SL~~iGid~~~hDIrF--veDnWE-  126 (307)
                      -++.|.+.-.+-.|.|+...   +...++-.++|.-.++--..-   +....-..-|+.+|+.    +++|  .+.... 
T Consensus       220 r~~~piRlFeiGrVFR~D~i---~DatHl~~FhQ~EGlvvg~~Vdf~DLKgiLe~lL~~Lg~~----~vkfr~~~s~~Pf  292 (701)
T 2odr_C          220 KKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKSKY  292 (701)
T ss_dssp             TSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCCTT
T ss_pred             CCCCCEEEEEEEEEEECCCC---CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CEEEEECCCCCCC
T ss_conf             79998499987666725762---4255784246789999858868999999999999996787----7299965778899


Q ss_pred             -CCHH-------HHCCCCE-EEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             -7001-------1012321-768878741477789986682577514567878999999986998211332068
Q gi|254780757|r  127 -SPTL-------GAWGLGW-ECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNA  191 (307)
Q Consensus       127 -sPtL-------GAwGlGW-EvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~  191 (307)
                       .|..       +.++-|| ||--=|| |.. .- ..-.||+.....  .--|||||||-.-+++++-++...+
T Consensus       293 ~hPg~eaeV~~~~~~~~~WlEIgg~Gm-vhP-~V-L~~~GId~~V~A--fGLGLERLAMlkygI~DIR~L~~P~  361 (701)
T 2odr_C          293 YTPETQTEVYAYHPKLKEWLEVATFGV-YSP-VA-LSKYGIDVPVMN--LGLGVERLAMISGNFADVREMVYPQ  361 (701)
T ss_dssp             BCTTCCEEEEEEETTTTEEEEEEEEEE-BCH-HH-HHHTTCCSCEEE--EEEEHHHHHHHHTTCSCHHHHHCGG
T ss_pred             CCCCEEEEEEEEECCCCEEEEEECCCC-CCH-HH-HHHCCCCCCEEE--EEECHHHHHHHHCCCCHHHHHHCCC
T ss_conf             899135899999465994899965754-079-99-987697986799--9877899999873991777761577


No 84 
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=27.19  E-value=28  Score=14.35  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=21.5

Q ss_pred             CCCCCCCCCCCCCCEEE-------EEEE-EECCCCHHHHHHH
Q ss_conf             87655466775001144-------4455-7579833589999
Q gi|254780757|r   69 PLDGRYAENPNRLQHYY-------QFQV-IIKPNPLNLQNLY  102 (307)
Q Consensus        69 P~DgRYGeNPNRlq~y~-------QfQV-ilKPsp~niq~lY  102 (307)
                      ..+=||||||.-=--+|       .+++ -=|||-.|+.|+.
T Consensus       204 ~~~LRYGENPHQ~Aa~y~~~~~~~~~~~~~g~~SYNN~lD~d  245 (593)
T 1g8m_A          204 QLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL  245 (593)
T ss_dssp             EEEESCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHH
T ss_conf             566637888445536521568642788863256632356679


No 85 
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}
Probab=26.18  E-value=30  Score=14.22  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=34.7

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCC-----CCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             5798335899999999981999621-----71798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLI-----HDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~-----hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||.|    +.|+.-++.+|+.+.+     .++-||+|.. +--.+|...|-. |++.
T Consensus       169 ~KP~P----d~~~~a~~~Lg~~~~e~~~~p~~~l~IGDs~-~Di~aAk~aG~~~I~v~  221 (275)
T 2qlt_A          169 GKPHP----EPYLKGRNGLGFPINEQDPSKSKVVVFEDAP-AGIAAGKAAGCKIVGIA  221 (275)
T ss_dssp             CTTSS----HHHHHHHHHTTCCCCSSCGGGSCEEEEESSH-HHHHHHHHTTCEEEEES
T ss_pred             CCCCH----HHHHHHHHHCCCCCCCCCCCCCCEEEECCCH-HHHHHHHHCCCEEEEEC
T ss_conf             99986----9999999980997332469965589985888-89999998699899989


No 86 
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=25.90  E-value=17  Score=15.99  Aligned_cols=14  Identities=14%  Similarity=0.318  Sum_probs=6.1

Q ss_pred             CCCCCCHHHHHHHH
Q ss_conf             25775145678789
Q gi|254780757|r  158 IECSPISGEITYGL  171 (307)
Q Consensus       158 i~c~pv~~EiTYGL  171 (307)
                      +.+.||....-|..
T Consensus       158 ~~~~pV~S~pI~d~  171 (275)
T 1gji_A          158 LALPPLISNPIYDN  171 (275)
T ss_dssp             EECCCEECCCEEBT
T ss_pred             ECCCCEECCCEECC
T ss_conf             03686561451058


No 87 
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A*
Probab=25.85  E-value=20  Score=15.50  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=37.7

Q ss_pred             HHHHCCCCCCCCCEEEEECC--CCCCHHHHC---CCCEEEEEC-CEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99981999621717988328--887001101---232176887-874147778998668257751456787899999998
Q gi|254780757|r  105 SLKAVGIDPLIHDVRFVEDN--WESPTLGAW---GLGWECWCD-GMEISQFTYFQQVCGIECSPISGEITYGLERLAMYV  178 (307)
Q Consensus       105 SL~~iGid~~~hDIrFveDn--WEsPtLGAw---GlGWEvwld-GMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMyl  178 (307)
                      -|+.++..  +-.+||+.+.  |-.|..-|-   .-+|--++. || |-. ...+.+| ++- ++..-.--||||+||-.
T Consensus       214 ll~~l~~~--~~~~r~~~~~fPft~Ps~e~~I~~~~~wiei~g~G~-vhP-~Vl~~~g-~~~-~~g~AFGlGleRlaml~  287 (415)
T 3cmq_A          214 LMAHLFGD--ELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGV-MEQ-QLVNSAG-AQD-RIGWAFGLGLERLAMIL  287 (415)
T ss_dssp             HHHHHHCT--TCCEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEE-ECH-HHHHHTT-CTT-EEEEEEEEEHHHHHHHH
T ss_pred             HHHHHCCC--CCEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEC-CCH-HHHHHCC-CCC-CEEEEEEEECCHHHHHH
T ss_conf             99996798--757998407898767632799998885666878602-579-9998659-987-65899987325788876


Q ss_pred             CCCCCEEEE
Q ss_conf             699821133
Q gi|254780757|r  179 QNVNSVYDI  187 (307)
Q Consensus       179 Q~vdnvyDl  187 (307)
                      -+++++-++
T Consensus       288 ~~i~DiR~~  296 (415)
T 3cmq_A          288 YDIPDIRLF  296 (415)
T ss_dssp             SCCCCGGGG
T ss_pred             CCCCHHHHH
T ss_conf             164248888


No 88 
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=25.32  E-value=31  Score=14.11  Aligned_cols=45  Identities=20%  Similarity=0.241  Sum_probs=35.3

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||.|.    .|..-++.+|++|.  ++-||.|+ .+--.+|--.|.- ||..
T Consensus       164 ~kpk~~----~~~~~~~~~g~~p~--~~i~VGDs-~~Di~~a~~aG~~~i~v~  209 (240)
T 2hi0_A          164 RKPAPD----MTSECVKVLGVPRD--KCVYIGDS-EIDIQTARNSEMDEIAVN  209 (240)
T ss_dssp             CTTSSH----HHHHHHHHHTCCGG--GEEEEESS-HHHHHHHHHTTCEEEEES
T ss_pred             CCCCCH----HHHHHHHHHCCCCC--CEEEEECC-HHHHHHHHHCCCEEEEEC
T ss_conf             555722----56899999499854--15999278-878999998699699988


No 89 
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=23.84  E-value=16  Score=16.15  Aligned_cols=71  Identities=15%  Similarity=0.074  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEECCCC-----CCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCC--CCHHHHH
Q ss_conf             589999999998199962171798832888-----70011012321768878741477789986682577--5145678
Q gi|254780757|r   97 NLQNLYIESLKAVGIDPLIHDVRFVEDNWE-----SPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECS--PISGEIT  168 (307)
Q Consensus        97 niq~lYl~SL~~iGid~~~hDIrFveDnWE-----sPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~--pv~~EiT  168 (307)
                      ...+--+++|+-|||+..+. +.+--|.-+     ---|-+-|+-+-+.|.--||.+..-=|+..|..|.  .-+.+..
T Consensus        76 e~~~~I~edL~WLGl~wDe~-~~~QSer~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~~r~~~~~~~  153 (553)
T 1qtq_A           76 EYVESIKNDVEWLGFHWSGN-VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEEN  153 (553)
T ss_dssp             HHHHHHHHHHHHTTCCCSSS-CEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCC-CEEHHHCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             99999999999779989988-5022115999999999999869957557899999998877872799999776431367


No 90 
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=22.54  E-value=34  Score=13.75  Aligned_cols=50  Identities=20%  Similarity=0.310  Sum_probs=31.9

Q ss_pred             EEEEECCCCHHHHHHHHHHH-HHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE
Q ss_conf             45575798335899999999-981999621717988328887001101232176
Q gi|254780757|r   87 FQVIIKPNPLNLQNLYIESL-KAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC  139 (307)
Q Consensus        87 fQVilKPsp~niq~lYl~SL-~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv  139 (307)
                      ..++=||+|.-.+.. ++.| +.+|+++  .++-+|-|+.++--+||--.||--
T Consensus       199 ~~~~GKP~~~~f~~a-l~~l~~~~~~~~--~~~lmIGD~l~tDI~gA~~~G~~s  249 (284)
T 2hx1_A          199 FIRFGKPDSQMFMFA-YDMLRQKMEISK--REILMVGDTLHTDILGGNKFGLDT  249 (284)
T ss_dssp             EEEESTTSSHHHHHH-HHHHHTTSCCCG--GGEEEEESCTTTHHHHHHHHTCEE
T ss_pred             CCCCCCCHHHHHHHH-HHHHHHCCCCCC--CEEEEECCCCHHHHHHHHHCCCCE
T ss_conf             635789807888889-999743047896--639999289178999999869989


No 91 
>2oiz_D Aromatic amine dehydrogenase, small subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_D* 2agx_D* 2agl_D* 2agz_D* 2ah0_D* 2ah1_D* 2h3x_B* 2h47_B* 2hj4_D* 2hjb_D* 2hkm_D* 2hxc_D* 2iaa_B* 2iup_D* 2iuq_D* 2iur_D* 2iuv_D* 2agy_D* 2ok4_D* 2ok6_D* ...
Probab=20.86  E-value=30  Score=14.12  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.7

Q ss_pred             CCCCCCEEEEECCCCCCCCCC
Q ss_conf             483440167641557887655
Q gi|254780757|r   53 LGPLSWKAAYVQPSRRPLDGR   73 (307)
Q Consensus        53 lg~~pw~~aYvqPsrRP~DgR   73 (307)
                      -|.+|=.+..|--||-|.|||
T Consensus        53 PGt~~s~isWVGtC~NP~Dgk   73 (135)
T 2oiz_D           53 PGSTPSPISXIGTCHNPHDGK   73 (135)
T ss_dssp             TTCEEEEEEEEEEEECTTTCC
T ss_pred             CCCCCCCCCEEEEECCCCCCC
T ss_conf             988557530025634899987


No 92 
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ...
Probab=20.86  E-value=36  Score=13.62  Aligned_cols=25  Identities=36%  Similarity=0.539  Sum_probs=12.0

Q ss_pred             CCHHHHHHHHHHHHHH--HCCCCCEEEE
Q ss_conf             5145678789999999--8699821133
Q gi|254780757|r  162 PISGEITYGLERLAMY--VQNVNSVYDI  187 (307)
Q Consensus       162 pv~~EiTYGLERiaMy--lQ~vdnvyDl  187 (307)
                      |--.|..-||||.-|-  ++++| +||+
T Consensus         7 Ptd~EqATGlEr~ella~~~g~D-~fd~   33 (98)
T 1v54_F            7 PTDEEQATGLEREVMLAARKGQD-PYNI   33 (98)
T ss_dssp             CCHHHHCCHHHHHHHHHHHTTCC-TTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC-HHHC
T ss_conf             98788711378999999855997-1114


No 93 
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=20.36  E-value=30  Score=14.13  Aligned_cols=14  Identities=7%  Similarity=0.365  Sum_probs=7.5

Q ss_pred             HHHHHHHCCCCCCC
Q ss_conf             77899866825775
Q gi|254780757|r  149 FTYFQQVCGIECSP  162 (307)
Q Consensus       149 FTYFQQvGGi~c~p  162 (307)
                      .-++++.|-+.+-|
T Consensus       143 ~~~l~~~G~~PLPP  156 (346)
T 1yy3_A          143 YEVLESLGEMPLPP  156 (346)
T ss_dssp             HHHHHHHHTCCCCH
T ss_pred             HHHHHHCCCCCCCC
T ss_conf             99999728999995


Done!