RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (307 letters) >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:1-199) Length = 199 Score = 357 bits (919), Expect = e-100 Identities = 120/198 (60%), Positives = 148/198 (74%), Gaps = 4/198 (2%) Query: 4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYV 63 IH+ + Q++I L +WA +GC + QPYD EVGAGTFHP+T +L WK AYV Sbjct: 6 IHHHHHHXYLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYV 65 Query: 64 QPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVED 123 QPSRRP DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVED Sbjct: 66 QPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVED 125 Query: 124 NWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNS 183 NWESPTLGAWG+GWE W DG EI+QFTYFQQ+ GI I EITYGLER+A Y+Q V++ Sbjct: 126 NWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGLERIAXYLQGVDN 185 Query: 184 VYDIVFNAIEGQNVLYGD 201 VY++ +N +NV YGD Sbjct: 186 VYEVQWN----ENVKYGD 199 >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:200-298) Length = 99 Score = 143 bits (363), Expect = 2e-35 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 10/101 (9%) Query: 202 IFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCI 261 +F ++E+E+S +NFE AN +L HF + EKE L++K + PAYD + Sbjct: 1 VFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY----------LPAYDYIL 50 Query: 262 KASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMT 302 K SH FNLLDARG IS ++RQ Y+ RI++ A+ FL Sbjct: 51 KCSHTFNLLDARGAISVSQRQTYVKRIQAXARKAARVFLEV 91 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} (A:1-260) Length = 260 Score = 34.5 bits (79), Expect = 0.020 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 16/93 (17%) Query: 104 ESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPI 163 E L +G+ D+ + E+ W G G E G+E++ + E Sbjct: 172 ELLNELGVKK--EDIVYKEEPWAGG--GNAGPCLEAIVGGLEVATLVFXNLEEHPEGDIE 227 Query: 164 SGEITY------------GLERLAMYVQNVNSV 184 Y GLER + +V Sbjct: 228 IKGARYRKXDNYIVDTGYGLERFVWASKGTPTV 260 >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} (A:135-278,A:415-546) Length = 276 Score = 30.8 bits (69), Expect = 0.22 Identities = 10/48 (20%), Positives = 19/48 (39%) Query: 141 CDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIV 188 E + F +P G I +GL+RL + S+ +++ Sbjct: 229 IGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVI 276 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:1-266) Length = 266 Score = 30.2 bits (68), Expect = 0.38 Identities = 7/16 (43%), Positives = 8/16 (50%) Query: 169 YGLERLAMYVQNVNSV 184 YGLERL Q + Sbjct: 251 YGLERLVWMSQGTPTA 266 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} (A:1-237) Length = 237 Score = 29.9 bits (67), Expect = 0.45 Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 169 YGLERLAMYVQNVNSVY 185 GLER+A +Q NS + Sbjct: 221 MGLERIASVLQGKNSNF 237 >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} (A:) Length = 294 Score = 29.5 bits (64), Expect = 0.60 Identities = 7/48 (14%), Positives = 17/48 (35%) Query: 142 DGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVF 189 G+ F + ++ S G+ERL ++ + ++ Sbjct: 236 AGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQP 283 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} (A:129-271,A:422-557) Length = 279 Score = 28.6 bits (63), Expect = 1.1 Identities = 6/19 (31%), Positives = 13/19 (68%) Query: 170 GLERLAMYVQNVNSVYDIV 188 GL+RL M + +++ D++ Sbjct: 256 GLDRLTMLLTGTDNIRDVI 274 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:1-252) Length = 252 Score = 27.2 bits (60), Expect = 3.2 Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 169 YGLERLAMYVQNVNS 183 GLER+A +Q+VNS Sbjct: 238 MGLERIAAVLQHVNS 252 >1pgs_A Peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase F; endoglycosidase; 1.80A {Elizabethkingia meningoseptica} (A:138-314) Length = 177 Score = 26.8 bits (59), Expect = 3.3 Identities = 6/17 (35%), Positives = 7/17 (41%) Query: 131 GAWGLGWECWCDGMEIS 147 G W WC GM + Sbjct: 105 GNWTPDRAGWCPGMAVP 121 >2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate binding module, beta-sandwich proteins; 2.0A {Clostridium thermocellum} PDB: 2c26_A (A:105-260) Length = 156 Score = 26.6 bits (58), Expect = 4.1 Identities = 1/27 (3%), Positives = 11/27 (40%) Query: 101 LYIESLKAVGIDPLIHDVRFVEDNWES 127 + ++++ + + ++E + Sbjct: 129 IQVQTIDEGEFTIYVDAIDWLEHHHHH 155 >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* (A:1-197,A:367-406) Length = 237 Score = 26.5 bits (57), Expect = 4.4 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 6/95 (6%) Query: 212 RYNFEYANPEILHNHFIDSEKECLDLLKK-GIPNEHHRHHLCVFPAYDQCIKASHIFNLL 270 + + ++LH H ++ + L+ P H + Sbjct: 100 KKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHE 159 Query: 271 DARGVISTTERQRYILRIRSLAKACGEAFLMTPNG 305 G I+ ++ R R +A G + PNG Sbjct: 160 KIIGRIAVSDLAR-----RWQMEALGSDAVEIPNG 189 >1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} (A:1-125,A:255-437) Length = 308 Score = 26.0 bits (57), Expect = 7.4 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Query: 229 DSEKECLDLLKKGIPN-EHHRHHLCVF 254 D E L+ L++G N E H ++ F Sbjct: 218 DLATENLEALREGFANLEKHIENIGKF 244 >1n1c_A TORA specific chaperone; TORD, 3D-domain swapping; 2.40A {Shewanella massilia} (A:129-217) Length = 89 Score = 25.5 bits (56), Expect = 8.7 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Query: 203 FAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250 F + ++ F Y+ L ++ + L+ I EHH HH Sbjct: 42 FINHLTQCNKNGF-YSAVATLTLAWVKQDIAQLEPAVAIISLEHHHHH 88 >2uuz_A GAMS, HOST-nuclease inhibitor protein GAM; recbcd inhibitor, putative DNA mimic; 2.3A {Bacteriophage lambda} PDB: 2uv1_A (A:) Length = 99 Score = 25.4 bits (55), Expect = 8.9 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 9/47 (19%) Query: 207 EQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCV 253 Q ++R+ + A E E E D ++KGIP +H LC+ Sbjct: 13 AQSWARHYQQLAREE--------KEAELADDMEKGIP-QHLFESLCI 50 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.139 0.443 Gapped Lambda K H 0.267 0.0649 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,539,383 Number of extensions: 118876 Number of successful extensions: 296 Number of sequences better than 10.0: 1 Number of HSP's gapped: 295 Number of HSP's successfully gapped: 25 Length of query: 307 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 219 Effective length of database: 1,981,209 Effective search space: 433884771 Effective search space used: 433884771 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (24.7 bits)