RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
         (307 letters)



>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 281

 Score =  488 bits (1258), Expect = e-139
 Identities = 163/292 (55%), Positives = 210/292 (71%), Gaps = 14/292 (4%)

Query: 11  LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPL 70
           +  Q++I+ L  +WA +GC + QPYDMEVGAGTFHP+T   +L    WK AYVQPSRRP 
Sbjct: 1   MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPT 60

Query: 71  DGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTL 130
           DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+   HD+RFVEDNWESPTL
Sbjct: 61  DGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTL 120

Query: 131 GAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190
           GAWG+GWE W DGMEI+QFTYFQQ+ GI    I  EITYGLER+AMY+Q V++VY++ +N
Sbjct: 121 GAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWN 180

Query: 191 AIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250
               +NV YGD+F ++E+E+S +NFE AN  +L  HF + EKE   L++K +        
Sbjct: 181 ----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY------- 229

Query: 251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMT 302
               PAYD  +K SH FNLLDARG IS ++RQ Y+ RI+++A+     FL  
Sbjct: 230 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEV 278


>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 236

 Score = 30.7 bits (69), Expect = 0.17
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 169 YGLERLAMYVQNVNSVY 185
            GLER+A  +Q  NS +
Sbjct: 220 MGLERIASVLQGKNSNF 236


>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 200

 Score = 25.2 bits (54), Expect = 7.3
 Identities = 10/120 (8%), Positives = 26/120 (21%), Gaps = 18/120 (15%)

Query: 133 WGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNV--NSVYDIVFN 190
             +      +   +       +    E   I+G       +       V   S+      
Sbjct: 87  AEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIA---- 142

Query: 191 AIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250
                 V       + ++++  +   YA+                + +  G      R  
Sbjct: 143 -----KVEREREIERLKEKFGDFGSGYASDPRTREVL-------KEWIASGRIPSCVRMR 190


>d2icwg1 a.202.1.1 (G:1-213) Superantigen MAM {Mycoplasma
           arthritidis [TaxId: 2111]}
          Length = 213

 Score = 25.0 bits (54), Expect = 8.2
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 229 DSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLL 270
           +  KE L L K  + N+ +RH   +   Y+  ++   IFN++
Sbjct: 39  EETKEVLKLFKLKV-NQFYRHAFGIVNDYNGLLEYKEIFNMM 79


>d1o75a1 b.1.20.1 (A:207-332) Tp47 lipoprotein, middle and
           C-terminal domains {Treponema pallidum [TaxId: 160]}
          Length = 126

 Score = 25.1 bits (54), Expect = 8.3
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)

Query: 24  WAQQG------CTILQPYDMEVGAGTFHPSTTLRALG 54
           W + G      C I   +D   G+G  +   TL A G
Sbjct: 79  WWKTGRVPRISCGINYGFDRFKGSGPGYYRLTLIANG 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,231,282
Number of extensions: 58306
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 17
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)