BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
         (307 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 307

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 1   MAPIHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKA 60
           MAPIHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKA
Sbjct: 1   MAPIHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKA 60

Query: 61  AYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRF 120
           AYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRF
Sbjct: 61  AYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRF 120

Query: 121 VEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN 180
           VEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN
Sbjct: 121 VEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN 180

Query: 181 VNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKK 240
           VNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKK
Sbjct: 181 VNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKK 240

Query: 241 GIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300
           GIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL
Sbjct: 241 GIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300

Query: 301 MTPNGGH 307
           MTPNGGH
Sbjct: 301 MTPNGGH 307


>gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 362

 Score = 28.9 bits (63), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 19/22 (86%)

Query: 6   NKKNDLSFQNIILTLTQYWAQQ 27
           NK+N+++F+NI  + T+YWA++
Sbjct: 339 NKENEVNFENIRGSYTEYWAKK 360


>gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 210

 Score = 27.3 bits (59), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 152 FQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN-AIEGQNVLYGDIFAQSEQEY 210
            +  CGI C+P+     + L+   M ++N  SV+   F  +++ ++ +   I A  ++ Y
Sbjct: 55  IRHTCGIVCTPMPFHTAHKLKLNPMVLEN-ESVHKTAFTVSVDSKHGITTGISAD-DRAY 112

Query: 211 SRYNFEYANPEILHNHFI 228
           +  N   ANP  + ++F+
Sbjct: 113 TIKNL--ANPHSIADNFV 128


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 25.8 bits (55), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 9   NDLSFQNIILTLTQYWAQQGCTILQ 33
           ++LSF+ II TL + W++   ++LQ
Sbjct: 385 SNLSFRGIIPTLEKRWSEADSSLLQ 409


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 22.7 bits (47), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 206 SEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNE 245
           +++E   YN +    +   +HFID EK  + LLK  I  +
Sbjct: 299 TQKEIINYNTQMKEAKDKESHFIDFEK--ITLLKNKITKK 336


>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 199

 Score = 22.3 bits (46), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 79  NRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGI 111
           ++L HY    +I K  P ++QN  +   + +GI
Sbjct: 36  DKLYHYEAVDIIKKTFPRSIQNNKVNKARLLGI 68


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,765
Number of Sequences: 1233
Number of extensions: 8626
Number of successful extensions: 27
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 7
length of query: 307
length of database: 328,796
effective HSP length: 74
effective length of query: 233
effective length of database: 237,554
effective search space: 55350082
effective search space used: 55350082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)