HHsearch alignment for GI: 254780758 and conserved domain: TIGR03675
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.64 E-value=4.4e-16 Score=113.21 Aligned_cols=149 Identities=16% Similarity=0.165 Sum_probs=96.0
Q ss_pred EEEEEECCCCC---CCEEEEEECCCCEEEEECCCCCHH----HHHHHHH--HCCC-CEEEEEECCCCCCCCCCCHHHHH-
Q ss_conf 59999708765---716999988998499983899999----9999999--7499-75299986988521011056788-
Q gi|254780758|r 5 SFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQ--SRNF-HVKQIWITHGHVDHVGGAAQLKE- 73 (216)
Q Consensus 5 ~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~~~----~i~~~l~--~~~~-~i~~Ii~TH~H~DH~gg~~~l~~- 73 (216)
T Consensus 174 ~vrit~LG~~~eVGRSc~l~~~~~~--~illDcG~~~~~~~~~~~P~~d~~e~~~~~IDAVvlTHAHLDH~G~LP~L~k~ 251 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLSTPES--RILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY 251 (630)
T ss_pred EEEEEECCCCCCCCCEEEEEECCCE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHC
T ss_conf 4999834676702645899963981--79998888877777545886567779801185899833532125632188764
Q ss_pred HHCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCC---------CCCCEEEECCCCEEEEE-CCCCCCCCCCCCCCCCCCC
Q ss_conf 6079554058438988401234444320023466---------66741896478399762-0123310122247210000
Q gi|254780758|r 74 DLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNAR---------NASSDRWLQDGDTLLLG-THIFKVFHCPGHSPGHVIY 143 (216)
Q Consensus 74 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~gd~i~lg-~~~~~vi~tPGHt~g~~~~ 143 (216)
T Consensus 252 Gf~GpIy~T~pT~dL~~llL~D~~ki~~~e~~~plYt~~dv~~~l~~~~~l~y~~~~~i~~~ik~tf~~A-GHILGSAmv 330 (630)
T TIGR03675 252 GYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSAIA 330 (630)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCEEEEEECC-CCCCEEEEE
T ss_conf 8889888654599999999998999987058999989999999984456248998597179849999768-861044799
Q ss_pred CC--CCC--CCCCCCCH
Q ss_conf 01--234--32111100
Q gi|254780758|r 144 VN--FEN--NFAHLGDT 156 (216)
Q Consensus 144 ~~--~~~--~~lftGD~ 156 (216)
T Consensus 331 ~l~i~~g~~~ilfTGD~ 347 (630)
T TIGR03675 331 HLHIGDGLYNIVYTGDF 347 (630)
T ss_pred EEEECCCCEEEEEECCC
T ss_conf 99976896799995998