HHsearch results for GI: 254780758 and protein with PDBid: 3af5_A
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.73 E-value=5.6e-18 Score=122.99 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=97.9
Q ss_pred EEEEEECCCCC---CCEEEEEECCCCEEEEECCCCCHHH--------------HHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 59999708765---7169999889984999838999999--------------999999749975299986988521011
Q gi|254780758|r 5 SFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGDLDI--------------IKDVIQSRNFHVKQIWITHGHVDHVGG 67 (216)
Q Consensus 5 ~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~~~~--------------i~~~l~~~~~~i~~Ii~TH~H~DH~gg 67 (216)
.+++.++|+++ -|||++..++. .+|+|||..... -...+.+ ..++++|++||+|.||+|+
T Consensus 188 ~vrit~LGG~~EIGrs~~lv~~~~~--~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~-~~~idAVlITHaH~DHiG~ 264 (651)
T 3af5_A 188 WIRITGLGGFREVGRSALLVQTDES--FVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLR-EGLLDAIIITHAHLDHCGM 264 (651)
T ss_dssp CEEEEEEECSSSSSCCEEEEEESSC--EEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHH-TTCCCEEECSCSSHHHHTT
T ss_pred CEEEEEECCCCCCCCCEEEEEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEECCCCHHHHCC
T ss_conf 2799993688862466799996796--899989988565667311367767765212367-5655689978898788686
Q ss_pred CHHHHHH--HCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCC---------CCCEEEECCCCEEEEE-CCCCCCCCCCC
Q ss_conf 0567886--0795540584389884012344443200234666---------6741896478399762-01233101222
Q gi|254780758|r 68 AAQLKED--LSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN---------ASSDRWLQDGDTLLLG-THIFKVFHCPG 135 (216)
Q Consensus 68 ~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~gd~i~lg-~~~~~vi~tPG 135 (216)
+++|.+. +.+|+|++......+................... ......++.++..+++ +.+++++.+ |
T Consensus 265 LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~~~a-G 343 (651)
T 3af5_A 265 LPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNA-G 343 (651)
T ss_dssp HHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEEC-S
T ss_pred HHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEECCC-C
T ss_conf 889997378888776678999999999999999876116777789999999985419957998498079879986568-9
Q ss_pred CCCCCCCCCCC--C--CCCCCCCCHH
Q ss_conf 47210000012--3--4321111000
Q gi|254780758|r 136 HSPGHVIYVNF--E--NNFAHLGDTL 157 (216)
Q Consensus 136 Ht~g~~~~~~~--~--~~~lftGD~l 157 (216)
|+.|+.++++. + .+++||||.=
T Consensus 344 H~lGsa~~~i~i~~~~~~IvyTGDfk 369 (651)
T 3af5_A 344 HILGSAIVHLHIGNGLHNIAITGDFK 369 (651)
T ss_dssp SSTTCEEEEEEETTTTTCEEECCSCC
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 88703089999568866899777878