Query gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 216 No_of_seqs 176 out of 7460 Neff 8.5 Searched_HMMs 23785 Date Tue May 31 15:20:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780758.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2xf4_A Hydroxyacylglutathione 100.0 0 0 353.4 17.6 210 4-214 1-210 (210) 2 1xm8_A Glyoxalase II; structur 100.0 0 0 328.1 17.1 187 4-215 1-224 (254) 3 2qed_A Hydroxyacylglutathione 100.0 0 0 323.4 17.0 186 1-215 5-227 (258) 4 2gcu_A Putative hydroxyacylglu 100.0 0 0 320.4 18.0 192 3-215 2-206 (245) 5 1qh5_A Glyoxalase II, protein 100.0 0 0 322.1 15.3 186 4-215 1-228 (260) 6 2p18_A Glyoxalase II; metallop 100.0 0 0 312.6 16.2 197 1-215 26-286 (311) 7 2zwr_A Metallo-beta-lactamase 100.0 0 0 304.4 18.8 202 4-214 1-202 (207) 8 2vw8_A PA1000, PQSE; quinolone 100.0 1.5E-34 6.4E-39 219.2 17.7 191 8-201 16-228 (303) 9 2gmn_A Metallo-beta-lactamase; 100.0 6.9E-34 2.9E-38 215.4 17.8 200 8-213 27-245 (274) 10 2zo4_A Metallo-beta-lactamase 100.0 8.7E-34 3.7E-38 214.8 16.5 183 15-202 21-239 (317) 11 1a7t_A Metallo-beta-lactamase; 100.0 9.5E-33 4E-37 208.8 12.9 172 14-203 35-213 (232) 12 1m2x_A Class B carbapenemase B 100.0 4.9E-32 2.1E-36 204.6 15.9 171 14-202 25-202 (223) 13 3l6n_A Metallo-beta-lactamase; 100.0 2.9E-32 1.2E-36 206.0 14.4 176 14-207 29-211 (219) 14 3adr_A Putative uncharacterize 100.0 1.1E-32 4.8E-37 208.3 12.2 192 1-201 1-212 (261) 15 2yz3_A Metallo-beta-lactamase; 100.0 1.1E-31 4.4E-36 202.7 12.5 184 14-213 67-257 (266) 16 1k07_A FEZ-1 beta-lactamase; m 100.0 4.1E-31 1.7E-35 199.2 15.2 201 8-212 17-237 (263) 17 2whg_A VIM-4 metallo-beta-lact 100.0 1.3E-31 5.6E-36 202.1 11.8 185 14-213 36-226 (230) 18 1mqo_A Beta-lactamase II; alph 100.0 9.1E-31 3.8E-35 197.3 14.2 182 15-213 40-227 (227) 19 1jjt_A IMP-1 metallo beta-lact 100.0 1.4E-30 6.1E-35 196.1 14.7 167 15-202 32-203 (228) 20 3iog_A Beta-lactamase; hydrola 100.0 1.4E-30 5.9E-35 196.2 14.0 190 3-202 2-210 (227) 21 1sml_A Protein (penicillinase) 100.0 3.9E-30 1.6E-34 193.6 14.2 187 10-201 32-230 (269) 22 2fhx_A SPM-1; metallo-beta-lac 100.0 3E-29 1.3E-33 188.4 15.1 187 12-204 26-229 (246) 23 2cfu_A SDSA1; SDS-hydrolase, l 100.0 1.8E-28 7.5E-33 183.9 14.8 188 11-201 117-349 (658) 24 2p97_A Hypothetical protein; p 100.0 5.2E-29 2.2E-33 187.0 12.1 167 12-206 20-192 (201) 25 2q9u_A A-type flavoprotein; fl 100.0 1.2E-28 4.8E-33 185.1 12.8 170 15-201 40-235 (414) 26 2ohh_A Type A flavoprotein FPR 100.0 3.2E-28 1.3E-32 182.5 14.3 172 15-201 34-238 (404) 27 1ycg_A Nitric oxide reductase; 100.0 4E-28 1.7E-32 181.9 12.6 172 15-201 35-232 (398) 28 1e5d_A Rubredoxin\:oxygen oxid 100.0 7E-28 3E-32 180.5 11.5 176 13-204 30-234 (402) 29 1vme_A Flavoprotein; TM0755, s 99.9 6.5E-27 2.7E-31 174.9 13.1 165 16-201 52-245 (410) 30 3esh_A Protein similar to meta 99.9 5.4E-28 2.3E-32 181.2 7.5 180 15-200 47-255 (280) 31 3hnn_A Putative diflavin flavo 99.9 1.5E-26 6.3E-31 172.8 13.5 169 16-200 43-235 (262) 32 3dha_A N-acyl homoserine lacto 99.9 5.1E-27 2.1E-31 175.5 8.5 183 1-198 5-241 (254) 33 2r2d_A AGR_PTI_140P, Zn-depend 99.9 9.2E-26 3.9E-30 168.2 7.3 191 16-212 43-275 (276) 34 1ztc_A Hypothetical protein TM 99.9 2E-25 8.6E-30 166.2 7.6 187 2-201 11-216 (221) 35 1p9e_A Methyl parathion hydrol 99.9 6E-26 2.5E-30 169.3 4.0 184 15-204 96-310 (331) 36 3bk2_A RNAse J, metal dependen 99.8 3E-19 1.3E-23 130.3 9.1 146 5-159 16-183 (562) 37 3af5_A Putative uncharacterize 99.7 5.6E-18 2.3E-22 123.0 8.2 149 5-157 188-369 (651) 38 2bib_A CBPE, teichoic acid pho 99.7 4.6E-17 2E-21 117.6 11.7 191 2-210 4-246 (547) 39 2i7t_A Cleavage and polyadenyl 99.7 3.5E-18 1.5E-22 124.2 5.2 150 4-156 10-180 (459) 40 2xr1_A Cleavage and polyadenyl 99.7 4.4E-18 1.9E-22 123.6 2.7 151 5-158 183-358 (640) 41 2az4_A Hypothetical protein EF 99.7 2.2E-16 9.2E-21 113.7 7.7 139 14-158 18-192 (429) 42 2i7x_A Protein CFT2; polyadeny 99.6 8.4E-16 3.5E-20 110.3 9.8 142 12-156 11-180 (717) 43 2p4z_A Metal-dependent hydrola 99.6 1.6E-14 6.8E-19 102.9 10.5 63 16-81 33-99 (284) 44 1zkp_A Hypothetical protein BA 99.5 5.6E-14 2.4E-18 99.7 8.7 138 3-158 24-182 (268) 45 3g1p_A Protein PHNP; C-P lyase 99.4 4.7E-13 2E-17 94.4 6.2 122 17-157 40-166 (258) 46 3jxp_A Coenzyme PQQ synthesis 99.2 5.8E-11 2.4E-15 82.2 8.1 71 16-89 40-120 (321) 47 2cbn_A Ribonuclease Z; phospho 99.1 2.4E-10 9.9E-15 78.7 9.4 84 3-89 1-102 (306) 48 3h3e_A Uncharacterized protein 99.1 1.9E-10 7.9E-15 79.3 7.5 66 3-74 12-84 (267) 49 1y44_A Ribonuclease Z; zinc-de 99.0 1.7E-09 7.2E-14 73.7 8.8 83 4-89 1-100 (320) 50 3kl7_A Putative metal-dependen 98.9 1.3E-09 5.6E-14 74.3 4.6 159 11-202 32-215 (235) 51 3md7_A Beta-lactamase-like; ss 98.7 6.2E-08 2.6E-12 64.6 8.0 57 16-74 62-122 (293) 52 3bv6_A Metal-dependent hydrola 98.7 1.5E-08 6.2E-13 68.2 4.6 169 12-199 65-309 (379) 53 1vjn_A Zn-dependent hydrolase 98.6 1.9E-07 8E-12 61.8 7.6 136 11-196 15-173 (220) 54 2wyl_A L-ascorbate-6-phosphate 98.5 2.6E-07 1.1E-11 61.1 7.5 134 12-159 41-230 (360) 55 2e7y_A TRNAse Z; tRNA maturati 98.4 7.4E-08 3.1E-12 64.2 2.8 51 17-73 12-62 (280) 56 2ji4_A Phosphoribosyl pyrophos 80.8 0.92 3.9E-05 23.0 2.8 34 174-208 287-321 (379) 57 3dah_A Ribose-phosphate pyroph 71.8 2.7 0.00011 20.3 3.2 34 175-209 232-266 (319) 58 1dku_A Protein (phosphoribosyl 68.9 3.3 0.00014 19.8 3.1 34 175-209 233-267 (317) 59 2h06_A Ribose-phosphate pyroph 64.1 3.1 0.00013 19.9 2.2 28 182-209 235-263 (326) 60 2vyc_A Biodegradative arginine 55.6 3.5 0.00015 19.6 1.2 12 52-63 313-324 (755) 61 1u9y_A RPPK;, ribose-phosphate 54.5 8.3 0.00035 17.4 3.0 36 174-210 220-256 (284) 62 3olh_A MST, 3-mercaptopyruvate 43.8 15 0.00063 15.9 4.3 55 134-202 215-269 (302) 63 1ii7_A MRE11 nuclease; RAD50, 37.8 19 0.00079 15.4 3.2 23 43-68 69-91 (333) 64 1rhs_A Sulfur-substituted rhod 34.4 21 0.00089 15.1 3.4 55 134-202 201-255 (296) 65 1w55_A ISPD/ISPF bifunctional 25.4 21 0.00087 15.1 1.2 71 114-186 220-296 (371) 66 2iss_D Glutamine amidotransfer 24.8 31 0.0013 14.1 2.8 23 30-52 24-46 (208) 67 2kb3_A Oxoglutarate dehydrogen 24.7 26 0.0011 14.5 1.6 23 113-135 120-142 (143) 68 2j13_A Polysaccharide deacetyl 24.4 32 0.0013 14.0 3.3 41 17-57 45-89 (247) 69 3aay_A Putative thiosulfate su 23.7 33 0.0014 13.9 4.0 21 37-57 61-82 (277) 70 3gqs_A Adenylate cyclase-like 23.6 25 0.001 14.6 1.3 27 109-135 78-104 (106) 71 1l1q_A Adenine phosphoribosylt 23.1 34 0.0014 13.9 2.3 12 146-157 116-127 (186) 72 1g2q_A Adenine phosphoribosylt 22.3 35 0.0015 13.8 3.9 13 145-157 120-132 (187) 73 2if1_A EIF1, SUI1; translation 21.8 36 0.0015 13.7 3.3 13 59-71 5-17 (126) 74 1vch_A Phosphoribosyltransfera 21.0 37 0.0016 13.6 3.7 12 146-157 119-130 (175) 75 2wns_A Orotate phosphoribosylt 20.8 38 0.0016 13.6 3.6 39 41-84 52-93 (205) 76 2h5e_A Peptide chain release f 20.8 38 0.0016 13.6 3.7 34 29-63 110-147 (529) 77 2p1z_A Phosphoribosyltransfera 20.4 39 0.0016 13.5 4.9 13 145-157 112-124 (180) 78 1o57_A PUR operon repressor; p 20.4 39 0.0016 13.5 2.9 12 146-157 195-206 (291) 79 1qb7_A APRT, adenine phosphori 20.1 39 0.0016 13.5 3.9 35 45-84 65-102 (236) No 1 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Probab=100.00 E-value=0 Score=353.41 Aligned_cols=210 Identities=41% Similarity=0.843 Sum_probs=192.1 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECC Q ss_conf 35999970876571699998899849998389999999999997499752999869885210110567886079554058 Q gi|254780758|r 4 LSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPH 83 (216) Q Consensus 4 ~~~~~i~v~~~~~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~ 83 (216) |++++||+++|++|||+|.++++++++|||||.+.+.+++.+++.+++|++|++||.|+||+||+..|++++++++++.. T Consensus 1 m~~~~i~~~~~~~N~yli~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~l~~~~~~~i~~~~ 80 (210) T 2xf4_A 1 MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPE 80 (210) T ss_dssp CEEEEEEETTTTEEEEEEECTTTCEEEEECCCSCHHHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHHTCCEECCC T ss_pred CCEEEEECCCHHCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEEEC T ss_conf 94399987844668999998999989999798089999999997799348999787998553518998775098478501 Q ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC Q ss_conf 43898840123444432002346666741896478399762012331012224721000001234321111000001356 Q gi|254780758|r 84 KDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIG 163 (216) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~~~~G 163 (216) ..+..+..........+.. .......++..+++++.+.+|+.++++++||||||||++++.++.+++|+||.+|.+++| T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~~~~g~~~~~~i~tPGHT~g~~~~~~~~~~~l~~GD~~~~~~~~ 159 (210) T 2xf4_A 81 KEDEFWLQGLPAQSRMFGL-DECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVG 159 (210) T ss_dssp GGGHHHHHTHHHHHHHTTC-CCCCCCCCSBCCCTTCEEEETTEEEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEEC T ss_pred CHHHHHHCCCHHHHHHCCC-CCCCCCCCCEEECCCCCCEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEECCCCC T ss_conf 0456652042123211033-345567785893168742369989999992699998689997788842148886379704 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCHHHHC Q ss_conf 634679899999999999985199978998488798888999882814514 Q gi|254780758|r 164 RTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPFLKS 214 (216) Q Consensus 164 ~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~~~e~~~n~~~~~ 214 (216) +++++.+|..++++||++++..++++++|+|||||+||+++||+.|||||+ T Consensus 160 ~~~~~~~d~~~~~~sl~~~l~~l~~~~~v~PGHG~~st~~~e~~~N~~~~~ 210 (210) T 2xf4_A 160 RSDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQD 210 (210) T ss_dssp CCCSTTCCHHHHHHHHHHHTGGGCTTCEEEESSSCCEEHHHHHHHCTTC-C T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCHHHCC T ss_conf 766788999999999999997089983998999986549999875845249 No 2 >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Probab=100.00 E-value=0 Score=328.06 Aligned_cols=187 Identities=33% Similarity=0.540 Sum_probs=168.4 Q ss_pred CEEEEEECCCCCCC-EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEEC Q ss_conf 35999970876571-69999889984999838999999999999749975299986988521011056788607955405 Q gi|254780758|r 4 LSFHIVQVTPFKQN-CTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGP 82 (216) Q Consensus 4 ~~~~~i~v~~~~~N-~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~ 82 (216) |++++||+ |++| +|+|.++++++|++|||| +.+.+++.+++.++++++|++||.|+||++|+.+|++++++++++. T Consensus 1 M~i~~ip~--l~dNy~Yli~d~~t~~~~vIDp~-~~~~vl~~l~~~~~~l~~Il~TH~H~DH~~g~~~l~~~~~~~i~~~ 77 (254) T 1xm8_A 1 MQIELVPC--LKDNYAYILHDEDTGTVGVVDPS-EAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGS 77 (254) T ss_dssp CEEEEEEE--TTTEEEEEEECTTTCCEEEECCS-SHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEE T ss_pred CEEEEEEE--ECCEEEEEEEECCCCEEEEECCC-CCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEE T ss_conf 97899743--42578999998999989999897-8299999999779916899944788655266899988639838973 Q ss_pred CHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC Q ss_conf 84389884012344443200234666674189647839976201233101222472100000123432111100000135 Q gi|254780758|r 83 HKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSI 162 (216) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~~~~ 162 (216) ..+.. .....++.+++|+.+.+|+.+++|++|||||+||+|||++++++|||||+||.+|| T Consensus 78 ~~~~~-------------------~~~~~~~~~~dgd~i~~g~~~~~vi~tPGHT~ghv~~~~~~~~~lftGDtlf~~g~ 138 (254) T 1xm8_A 78 AMDKD-------------------RIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSC 138 (254) T ss_dssp GGGGG-------------------GSTTEEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEGGGTEEEEETTEETTEE T ss_pred CCCCC-------------------CCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEECCCCEEEECCEEEECCC T ss_conf 33224-------------------58789878348973678887899997279887756899757537885688874588 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC------------------------------------CCCHHHHH Q ss_conf 663467989999999999998519997899848879------------------------------------88889998 Q gi|254780758|r 163 GRTDILHGDYQQLINSINNKILPLGDEISFVCGHGP------------------------------------NSTIGRER 206 (216) Q Consensus 163 G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~------------------------------------~tt~~~e~ 206 (216) ||+ ++|++.+|++|| +||++||++|+|||||++ +||++.|| T Consensus 139 Gr~--~~g~~~~~~~Sl-~kl~~Lp~~t~v~pgH~y~~~n~~f~~~~~~~n~~~~~~~~~~~~~~~~~~~tvpstl~~E~ 215 (254) T 1xm8_A 139 GKL--FEGTPKQMLASL-QKITSLPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEK 215 (254) T ss_dssp CCC--SSSCHHHHHHHH-HHHHTSCTTCEEEESBCCHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTCCCCCEEHHHHH T ss_pred CCC--CCCCHHHHHHHH-HHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 888--999999999999-99970896565722565543330125440787688999999999998779995775389998 Q ss_pred HHCHHHHCC Q ss_conf 828145148 Q gi|254780758|r 207 RLNPFLKSN 215 (216) Q Consensus 207 ~~n~~~~~~ 215 (216) +.|||||.+ T Consensus 216 ~~Npflr~~ 224 (254) T 1xm8_A 216 ACNPFLRSS 224 (254) T ss_dssp HHCGGGCTT T ss_pred HHCCCCCCC T ss_conf 749546789 No 3 >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 Probab=100.00 E-value=0 Score=323.41 Aligned_cols=186 Identities=28% Similarity=0.534 Sum_probs=161.9 Q ss_pred CCCCEEEEEECCCCCCCE-EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCE Q ss_conf 977359999708765716-9999889984999838999999999999749975299986988521011056788607955 Q gi|254780758|r 1 MSKLSFHIVQVTPFKQNC-TFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTI 79 (216) Q Consensus 1 m~~~~~~~i~v~~~~~N~-~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i 79 (216) |++|++++||+ |+.|+ |+|.+ ++++|++|||| +.+.+++.+++.++++++|++||.|+||++|+..+++++++++ T Consensus 5 ~~~~~i~~iP~--~~DNy~Yli~~-~~~~avvIDPg-~~~~il~~l~~~~~~l~~Il~TH~H~DHi~g~~~l~~~~~~~~ 80 (258) T 2qed_A 5 IGSMNLNSIPA--FQDNYIWVLTN-DEGRCVIVDPG-EAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFPQMT 80 (258) T ss_dssp --CCEEEEEEE--TTTEEEEEEEC-TTSEEEEECCS-CHHHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCTTCE T ss_pred CCCCEEEEEEE--ECCEEEEEEEE-CCCEEEEECCC-CCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCEE T ss_conf 65777999600--43758999993-89709998698-7599999999769905799937999876553355444320214 Q ss_pred EECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 40584389884012344443200234666674189647839976201233101222472100000123432111100000 Q gi|254780758|r 80 IGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFR 159 (216) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~ 159 (216) ++..... .....+..+.+||++.+|+.++++++||||||||+||+.+ +.+||||+||. T Consensus 81 ~~~~~~~--------------------~~~~~~~~l~dgd~i~iG~~~~~vihTPGHT~g~v~~~~~--~~lFtGDtLF~ 138 (258) T 2qed_A 81 VYGPAET--------------------QDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYFSR--PYLFCGDTLFS 138 (258) T ss_dssp EEECGGG--------------------GGGTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEET--TEEEEETTEET T ss_pred EECCCCC--------------------CCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEEC--CEEEECCCCCC T ss_conf 5215433--------------------3455414640586787688457999678999886678732--40560781306 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC------------------------------------CCCHH Q ss_conf 135663467989999999999998519997899848879------------------------------------88889 Q gi|254780758|r 160 SSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGP------------------------------------NSTIG 203 (216) Q Consensus 160 ~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~------------------------------------~tt~~ 203 (216) ++||| +++|++++|++|| ++|.+||++++|||||++ |||++ T Consensus 139 gg~Gr--~~~g~~~~m~~SL-~kl~~L~~~t~vypgH~y~~~nl~f~~~~~p~n~~l~~~~~~~~~~~~~~~~t~Pstl~ 215 (258) T 2qed_A 139 GGCGR--LFEGTPSQMYQSL-MKINSLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILK 215 (258) T ss_dssp TEECC--CSSSCHHHHHHHH-HHHHTSCTTCEEEESBCCHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTTCCCCCEEHH T ss_pred CCCCC--CCCCCHHHHHHHH-HHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEHH T ss_conf 88788--8998999999999-99971993124346774554566779872888699999999999999759995772399 Q ss_pred HHHHHCHHHHCC Q ss_conf 998828145148 Q gi|254780758|r 204 RERRLNPFLKSN 215 (216) Q Consensus 204 ~e~~~n~~~~~~ 215 (216) +||+.|||||.+ T Consensus 216 ~Ek~~NpflR~~ 227 (258) T 2qed_A 216 NERKINLFLRTE 227 (258) T ss_dssp HHHHHCGGGCTT T ss_pred HHHHHCHHHCCC T ss_conf 997659854789 No 4 >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Probab=100.00 E-value=0 Score=320.41 Aligned_cols=192 Identities=29% Similarity=0.386 Sum_probs=171.5 Q ss_pred CCEEEEEECCCCCCCEEEEEEC--CCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCE Q ss_conf 7359999708765716999988--998499983899-9999999999749975299986988521011056788607955 Q gi|254780758|r 3 KLSFHIVQVTPFKQNCTFLFDE--ESLEAVVVDPGG-DLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTI 79 (216) Q Consensus 3 ~~~~~~i~v~~~~~N~~li~~~--~~~~~ilID~G~-~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i 79 (216) +|.++++-....++|+|+|.|. .+++|++||||. +.+.+++.+++.++++++|++||.|+||++|+..|++++++.. T Consensus 2 ~m~~~q~~~~~~~~~sYli~d~~~~t~eaivIDP~~~~~~~~~~~i~~~~~~i~~Il~TH~H~DH~~g~~~l~~~~~~~~ 81 (245) T 2gcu_A 2 KLLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVK 81 (245) T ss_dssp CEEEEEEEETTTTEEEEEEEETTSTTCEEEEESCBGGGHHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCE T ss_pred CEEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCC T ss_conf 43788714899730899998588899989999299875899999999869967899835897688713999997641541 Q ss_pred EECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC------CCCCCC Q ss_conf 40584389884012344443200234666674189647839976201233101222472100000123------432111 Q gi|254780758|r 80 IGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFE------NNFAHL 153 (216) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~------~~~lft 153 (216) +..... .....+..+++++++.+|+.++++++||||||||+||++.+ .+++|| T Consensus 82 ~~~~~~---------------------~~~~~d~~~~dgd~~~iG~~~l~vi~TPGHT~gsv~~~~~d~~~~~~~~~lFt 140 (245) T 2gcu_A 82 SVISKA---------------------SGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFT 140 (245) T ss_dssp EEEEGG---------------------GCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEE T ss_pred CCCCCC---------------------CCCCCCEEECCCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEE T ss_conf 000124---------------------67667566148872148989999997789886338999436677776637995 Q ss_pred CCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CCCCHHHHHHHCHHHHCC Q ss_conf 10000013566346798999999999999851999789984887----988889998828145148 Q gi|254780758|r 154 GDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHG----PNSTIGRERRLNPFLKSN 215 (216) Q Consensus 154 GD~lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG----~~tt~~~e~~~n~~~~~~ 215 (216) ||+||.+||||+|+++|+..+|++|+++++..||++|+|||||| +.||+++||++||||+.+ T Consensus 141 GDtLF~g~~Gr~d~~~g~~~~l~~sl~~~l~~Lp~~t~i~pGH~~~~~~~tt~~~e~~~Np~l~~~ 206 (245) T 2gcu_A 141 GDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKD 206 (245) T ss_dssp ETTSBTTBCCCCSSTTCCHHHHHHHHHHHTTTSCTTCEEEESBCSSSCCCEEHHHHHHHCTTTTSC T ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCHHHHHH T ss_conf 476057756367889886999999998675459951799778788744443367565059999867 No 5 >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Probab=100.00 E-value=0 Score=322.11 Aligned_cols=186 Identities=25% Similarity=0.393 Sum_probs=164.5 Q ss_pred CEEEEEECCCCCCC-EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEEC Q ss_conf 35999970876571-69999889984999838999999999999749975299986988521011056788607955405 Q gi|254780758|r 4 LSFHIVQVTPFKQN-CTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGP 82 (216) Q Consensus 4 ~~~~~i~v~~~~~N-~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~ 82 (216) |++++||+ +++| +|+|.++++++|++|||| +.+.+++.+++.++++++|++||.|+||++|+..|++.+++..++. T Consensus 1 m~i~~ip~--l~DNysYli~d~~t~~a~vIDP~-~~~~i~~~~~~~~l~l~~Il~TH~H~DHi~g~~~l~~~~~~~~~~~ 77 (260) T 1qh5_A 1 MKVEVLPA--LTDNYMYLVIDDETKEAAIVDPV-QPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYG 77 (260) T ss_dssp CEEEEEEE--TTTEEEEEEEETTTTEEEEESCS-SHHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEE T ss_pred CEEEEEEE--ECCEEEEEEEECCCCEEEEEECC-CCHHHHHHHHHCCCEEEEEEECCCCHHHHCCHHHHHCCCCCCEECC T ss_conf 95789410--34268999998999989999089-8899999999779968899947898567510443101157724413 Q ss_pred CHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHH Q ss_conf 843898840123444432002346666741896478399762012331012224721000001234-----321111000 Q gi|254780758|r 83 HKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFEN-----NFAHLGDTL 157 (216) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~-----~~lftGD~l 157 (216) ... .....+..+.+|+.+.+|+.+++|++||||||||+||++++. +++||||+| T Consensus 78 ~~~---------------------~~~~~~~~~~~gd~~~~g~~~~~vi~TPGHT~gsv~~~~~~~~~~~~~~lFtGDtL 136 (260) T 1qh5_A 78 GDD---------------------RIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTL 136 (260) T ss_dssp SCT---------------------TSTTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTE T ss_pred CCC---------------------CCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCEEEECCCE T ss_conf 334---------------------56533223667738998999999998458888857899847888756517855744 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC------------------------------------CC Q ss_conf 001356634679899999999999985199978998488798------------------------------------88 Q gi|254780758|r 158 FRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPN------------------------------------ST 201 (216) Q Consensus 158 f~~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~------------------------------------tt 201 (216) |.+||||+ ++|+..+|+.|+++++..||++++||||||+. || T Consensus 137 F~gg~Gr~--~~g~~~~l~~si~~~l~~Lpd~t~vypGH~y~~~n~~f~~~~~~~n~~l~~~~~~~~~~~~~~~~tvpst 214 (260) T 1qh5_A 137 FVAGCGKF--YEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPST 214 (260) T ss_dssp ETTEECCC--TTCCHHHHHHHHHTTTTTSCTTCEEEESBCCHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCCCCCEE T ss_pred ECCCCCCC--CCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 36876688--8999899989998898529976379526667655467798857468999999999998987799957720 Q ss_pred HHHHHHHCHHHHCC Q ss_conf 89998828145148 Q gi|254780758|r 202 IGRERRLNPFLKSN 215 (216) Q Consensus 202 ~~~e~~~n~~~~~~ 215 (216) ++.||+.|||||.+ T Consensus 215 l~~E~~~NPflr~~ 228 (260) T 1qh5_A 215 LAEEFTYNPFMRVR 228 (260) T ss_dssp HHHHHHHCTTTTTT T ss_pred HHHHHHHCCCCCCC T ss_conf 99997649301479 No 6 >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Probab=100.00 E-value=0 Score=312.59 Aligned_cols=197 Identities=26% Similarity=0.368 Sum_probs=161.9 Q ss_pred CCCCEEEEEECCCCCCC-EEEEEECCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCCCCCCCCCCHH Q ss_conf 97735999970876571-6999988998499983899999999999974---------9975299986988521011056 Q gi|254780758|r 1 MSKLSFHIVQVTPFKQN-CTFLFDEESLEAVVVDPGGDLDIIKDVIQSR---------NFHVKQIWITHGHVDHVGGAAQ 70 (216) Q Consensus 1 m~~~~~~~i~v~~~~~N-~~li~~~~~~~~ilID~G~~~~~i~~~l~~~---------~~~i~~Ii~TH~H~DH~gg~~~ 70 (216) |+.|++.+|| .+++| +|+|.++++++|++||||++++.+++.+++. ++++++|++||.|+||++|+.. T Consensus 26 ~~~~~v~~iP--~l~DNysYLI~d~~t~ea~vIDPg~d~~~il~~i~~~~~~~~~~~~~l~l~~ILlTH~H~DHigG~~~ 103 (311) T 2p18_A 26 GSAFSVTVVP--TLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAK 103 (311) T ss_dssp TTTEEEEEEE--ETTTEEEEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHH T ss_pred CCCEEEEEEE--ECCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHH T ss_conf 5620899950--00642899999899997999918986189999999988753112369768799827888722524999 Q ss_pred HHHHHCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-- Q ss_conf 788607955405843898840123444432002346666741896478399762012331012224721000001234-- Q gi|254780758|r 71 LKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFEN-- 148 (216) Q Consensus 71 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~-- 148 (216) |++++++........ ............++.+++++++.+|+.++++++|||||+||+||++++. T Consensus 104 L~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~dgd~i~~G~~~l~vi~tPGHT~ghv~~~~~~~~~ 169 (311) T 2p18_A 104 LKAELEAMNSTVPVV--------------VVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQH 169 (311) T ss_dssp HHHHHHSCC--CCCE--------------EEEEGGGTCTTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECTTC T ss_pred HHHHHCCCCCCCCEE--------------EECCHHCCCCCCCEEECCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCC T ss_conf 999847853223103--------------411311068778466248970579999999986445577636999846777 Q ss_pred ----CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHH-------HHHCCCCCEEEEECCCC------------------- Q ss_conf ----321111000001356634679899999999999-------98519997899848879------------------- Q gi|254780758|r 149 ----NFAHLGDTLFRSSIGRTDILHGDYQQLINSINN-------KILPLGDEISFVCGHGP------------------- 198 (216) Q Consensus 149 ----~~lftGD~lf~~~~G~~d~~~~d~~~~~~sl~~-------~l~~l~~~~~v~PgHG~------------------- 198 (216) .++|+||+||.++||| +|+|+..+|++||++ ++..||++|+||||||+ T Consensus 170 ~~~~~~lFtGDtlF~gg~Gr--~~~g~~~~~~~SL~kl~~~~~~~l~~Lpd~t~IyPGH~y~~~nl~f~~~~~p~~~~~~ 247 (311) T 2p18_A 170 PNDGVALFTGDTMFIAGIGA--FFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDD 247 (311) T ss_dssp GGGCEEEEEETTEETTEECC--CTTSCHHHHHHHHHHHHTTTGGGTTGGGGGEEEEESBCCHHHHHHHHHHHCSCTTSHH T ss_pred CCCCCEEEECCEECCCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHH T ss_conf 76466799899952477778--9997999999999999986541445799985999187232466667765078743357 Q ss_pred ----------------------CCCHHHHHHHCHHHHCC Q ss_conf ----------------------88889998828145148 Q gi|254780758|r 199 ----------------------NSTIGRERRLNPFLKSN 215 (216) Q Consensus 199 ----------------------~tt~~~e~~~n~~~~~~ 215 (216) |||++.||+.|||||.+ T Consensus 248 ~~~~~~~~~~~~~~~~~~~pt~Pstl~~E~~~Npflr~~ 286 (311) T 2p18_A 248 LAFIQAQRAKYAAAVKTGDPSVPSSLAEEKRQNLFLRVA 286 (311) T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCEEHHHHHHHCTTGGGG T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC T ss_conf 889999999999998769998897599998749162789 No 7 >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Probab=100.00 E-value=0 Score=304.36 Aligned_cols=202 Identities=34% Similarity=0.517 Sum_probs=171.0 Q ss_pred CEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECC Q ss_conf 35999970876571699998899849998389999999999997499752999869885210110567886079554058 Q gi|254780758|r 4 LSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPH 83 (216) Q Consensus 4 ~~~~~i~v~~~~~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~ 83 (216) |++..+++||+++|||+|.++ ++++|||||.+.+.+++.+++.+.++++|++||.|+||++|+.+|++++++.++... T Consensus 1 m~i~~~~~Gp~~~N~ylI~~~--~~~ilID~G~~~~~~~~~l~~~~~~~~~vi~TH~H~DH~~g~~~l~~~~~~~~~~~~ 78 (207) T 2zwr_A 1 MRVFPVTLGPLQENAYLVETG--EGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHP 78 (207) T ss_dssp CEEEEEEETTTTEEEEEEEET--TEEEEECCCSCHHHHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHHCCCEEECG T ss_pred CEEEEEEECCHHCEEEEEEEC--CEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHCCHHHHHHHHCCCEEECC T ss_conf 989999708811889999989--989999498699999999998799724999799976675219999998699489613 Q ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC Q ss_conf 43898840123444432002346666741896478399762012331012224721000001234321111000001356 Q gi|254780758|r 84 KDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIG 163 (216) Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~~~~G 163 (216) .+.... ............ ...........+++++.+ ..++++++||||+||+++|++++++||+||.++.++++ T Consensus 79 ~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~----~~~~vi~~PGHt~g~~~~~~~~~~~lf~GD~~~~~~~~ 152 (207) T 2zwr_A 79 LDLPLY-EGADLAARAWGL-AIPKPPLPVRPLEEGMRL----FGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVG 152 (207) T ss_dssp GGHHHH-HTHHHHHHHTTC-CCCCCCSCCEECCTTCEE----TTEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEEC T ss_pred CCCCCC-CCCHHHHHCCCC-CCCCCCCCCCCCCCCCEE----EEEEEECCCCCCCCCEEEEECCCCEEEECCEECCCCCC T ss_conf 322000-362022101364-323675430002245157----77998324887878479998778988863570368845 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCHHHHC Q ss_conf 634679899999999999985199978998488798888999882814514 Q gi|254780758|r 164 RTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPFLKS 214 (216) Q Consensus 164 ~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~~~e~~~n~~~~~ 214 (216) +.+++++|..+|++|| +|+++|+++++|+|||||+||+++||++|||||. T Consensus 153 ~~~~~~~d~~~~~~sl-~kl~~l~~~~~i~PGHG~~tt~g~e~~~n~~l~~ 202 (207) T 2zwr_A 153 RYDLPGADPKALFASL-KRLLSLPPETRVHPGHGPGTTLGLEARTNPFLTG 202 (207) T ss_dssp CSSSTTCCHHHHHHHH-HHHTTSCTTCEEEESBSCCEEHHHHHHHCTTC-- T ss_pred CCCCCCCCHHHHHHHH-HHHHCCCCCEEEECCCCCCCCHHHHHHHCCCCCC T ss_conf 6567788999999999-9997589986999999986428999854902384 No 8 >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Probab=100.00 E-value=1.5e-34 Score=219.19 Aligned_cols=191 Identities=23% Similarity=0.272 Sum_probs=141.1 Q ss_pred EEECCCCCCCEEEEEECCCCEEEEECCCC--CHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHHHHHHC-CCEEE Q ss_conf 99708765716999988998499983899--99999999997499---75299986988521011056788607-95540 Q gi|254780758|r 8 IVQVTPFKQNCTFLFDEESLEAVVVDPGG--DLDIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQLKEDLS-LTIIG 81 (216) Q Consensus 8 ~i~v~~~~~N~~li~~~~~~~~ilID~G~--~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l~~~~~-~~i~~ 81 (216) +..+|..+.|||++.++++ .++|||||. +.+.+++.+++.+. +|++|++||.|+||+||+..|.++++ +++++ T Consensus 16 ~~~~g~~~~~~yll~~g~~-~~~lIDtG~~~~~~~~~~~l~~~~~~~~~I~~ii~TH~H~DH~gg~~~l~~~~p~~~v~~ 94 (303) T 2vw8_A 16 LCLLGDVQVPVFLLRLGEA-SWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQVLA 94 (303) T ss_dssp EEEESCTTSCEEEEEEETT-EEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGGCTTCEEEE T ss_pred EEECCCCCCEEEEEEECCC-CEEEEECCCCCHHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCHHHHHHCCCCCEEEE T ss_conf 3313767527999997998-689995989852999999999828982427989959099865086345542167866994 Q ss_pred CCHHHHHHHCCHHHHHH-------HH-----HCCCCCCCCCCEEEECCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 58438988401234444-------32-----0023466667418964783997620-12331012224721000001234 Q gi|254780758|r 82 PHKDDAAMMGKVDEQAR-------LL-----SIRMNARNASSDRWLQDGDTLLLGT-HIFKVFHCPGHSPGHVIYVNFEN 148 (216) Q Consensus 82 ~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~l~~gd~i~lg~-~~~~vi~tPGHt~g~~~~~~~~~ 148 (216) +..+...+ ........ .. ..........++..+.+|+++.+|+ ..++++++||||+||+++|+++. T Consensus 95 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~i~~PGHt~g~~~~~~~~~ 173 (303) T 2vw8_A 95 SERTCQAW-KSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRR 173 (303) T ss_dssp EHHHHHHT-TCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTTSSTTCEEEEETTT T ss_pred CHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCEEEECCCCCCCCCCCCCEEECCC T ss_conf 48899987-36301345777776543221024555556667856947999898578226732667996998756371799 Q ss_pred CCCCCCCHHHHC--CCCCCC-CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 321111000001--356634-67989999999999998519997899848879888 Q gi|254780758|r 149 NFAHLGDTLFRS--SIGRTD-ILHGDYQQLINSINNKILPLGDEISFVCGHGPNST 201 (216) Q Consensus 149 ~~lftGD~lf~~--~~G~~d-~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216) +++|+||+++.. ..+.+. .+.+|..++++|+ +++..++++..|+|||||..+ T Consensus 174 ~~lf~GD~~~~~~~~~~~~~~~~~~~~~~~~~sl-~rl~~l~~~~~i~PgHG~~~~ 228 (303) T 2vw8_A 174 RRLFCGDALGEFDEAEGVWRPLVFDDMEAYLESL-ERLQRLPTLLQLIPGHGGLLR 228 (303) T ss_dssp TEEEEETTTCEECTTTCSEECCCSSCHHHHHHHH-HHHHTSSCCSEEEESSSCEEE T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCCCC T ss_conf 9999828347778897766889997799999999-999768999899999997338 No 9 >2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1 Probab=100.00 E-value=6.9e-34 Score=215.39 Aligned_cols=200 Identities=22% Similarity=0.312 Sum_probs=153.2 Q ss_pred EEECCCCCCCEEEEEECCCCEEEEECCCC--CHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHHHHHHCCCEEEC Q ss_conf 99708765716999988998499983899--99999999997499---75299986988521011056788607955405 Q gi|254780758|r 8 IVQVTPFKQNCTFLFDEESLEAVVVDPGG--DLDIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQLKEDLSLTIIGP 82 (216) Q Consensus 8 ~i~v~~~~~N~~li~~~~~~~~ilID~G~--~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~ 82 (216) +..||..+.|+|+|..++ .++|||+|. +.+.+++.|++.+. +|++|++||.|+||+||+++|++.+++++|++ T Consensus 27 vy~vg~~~~n~ylI~~~~--~~iLID~G~~~~~~~i~~~l~~~g~~~~~v~~ii~TH~H~DH~gg~~~l~~~~~a~i~~~ 104 (274) T 2gmn_A 27 IYYVGTDGIAVYVIKTSQ--GLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAG 104 (274) T ss_dssp EEECCCSSSCCEEEEETT--EEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHHCCEEEEE T ss_pred EEEECCCCEEEEEEEECC--EEEEEECCCCCHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCCCHHHHHHHCCCEEEEE T ss_conf 999899988999999899--979990989434999999999759981330399969899635062556577539848750 Q ss_pred CHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC-- Q ss_conf 843898840123444432002346666741896478399762012331012224721000001234321111000001-- Q gi|254780758|r 83 HKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRS-- 160 (216) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~~-- 160 (216) ..+.. +++...................+++.+++++++.+|+.+++++++||||+||++++++..+.+++||.+|.. T Consensus 105 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~g~~~~lg~~~i~~i~tpGHt~g~~~~~~~~~~~~~~~d~l~~~~~ 183 (274) T 2gmn_A 105 ERDKP-LLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSG 183 (274) T ss_dssp GGGHH-HHHHTCCTTCTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCC T ss_pred HHHHH-HHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECC T ss_conf 10104-44323333221123346688764089405753422764135773798899878999864557635887999568 Q ss_pred ------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH------HCHHHH Q ss_conf ------35663467989999999999998519997899848879888899988------281451 Q gi|254780758|r 161 ------SIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERR------LNPFLK 213 (216) Q Consensus 161 ------~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~~~e~~------~n~~~~ 213 (216) .+|++++ .++..++.+|+ +++..+++++ |+||||+.+....++. .|+|++ T Consensus 184 ~~~~~~~~~~~~~-~~~~~~~~~sl-~~l~~l~~d~-vipgHg~~~~~~~~~~~~~~~~~~~~~~ 245 (274) T 2gmn_A 184 TVALNRLVGQPTY-AGIVDDYRATF-AKAKAMKIDV-LLGPHPEVYGMQAKRAEMKDGAPNPFIK 245 (274) T ss_dssp CCTTCCCSSSCSS-TTHHHHHHHHH-HHHHHSCCSE-EECSSGGGTTHHHHHHHCCTTSCCTTCC T ss_pred CCCCCCCCCCCCC-CCCHHHHHHHH-HHHHCCCCCE-EECCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 7467777377899-98899999999-9997699999-9889897547389998665258884469 No 10 >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Probab=100.00 E-value=8.7e-34 Score=214.80 Aligned_cols=183 Identities=21% Similarity=0.269 Sum_probs=133.9 Q ss_pred CCCEEEEEECCCCEEEEECCCCCH----HHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHH Q ss_conf 571699998899849998389999----999999997499---7529998698852101105678860795540584389 Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGDL----DIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDA 87 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~~----~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~ 87 (216) .+|||+|.+++ .++|||||... +.+.+.+++.++ +|++|++||+|.||+||+..|++ .+++++++..+.. T Consensus 21 ~vN~yli~~~~--~~vlIDtG~~~~~~~~~l~~~l~~~g~~~~~I~~Vi~TH~H~DH~Gg~~~l~~-~g~~v~~~~~~~~ 97 (317) T 2zo4_A 21 TVNLYLLQGAG--EVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEG-LGARVFLHEEEFA 97 (317) T ss_dssp EEEEEEEEETT--EEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHHH-TTCEEEEEGGGTT T ss_pred CEEEEEEEECC--EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHH-CCCCEECCHHHHH T ss_conf 67999999899--89999899997789999999999749997772499979988222221999974-5998313788888 Q ss_pred HH---HCCHH----HHHHH------------------HHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 88---40123----44443------------------2002346666741896478399762012331012224721000 Q gi|254780758|r 88 AM---MGKVD----EQARL------------------LSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVI 142 (216) Q Consensus 88 ~~---~~~~~----~~~~~------------------~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~ 142 (216) .. ..... ..... ........+..++..+.+|+++.+|+.+++++++||||+||++ T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~gg~~~~vi~~PGHt~~~~~ 177 (317) T 2zo4_A 98 RGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAA 177 (317) T ss_dssp THHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEETTEEEEEEECCSSSTTCEE T ss_pred HHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCCEEECCCCCCCCCCCEE T ss_conf 88765405055678888765421783333333443201235555688886794478556438845845778878998789 Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH Q ss_conf 001234321111000001356634----679899999999999985199978998488798888 Q gi|254780758|r 143 YVNFENNFAHLGDTLFRSSIGRTD----ILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTI 202 (216) Q Consensus 143 ~~~~~~~~lftGD~lf~~~~G~~d----~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~ 202 (216) +|+++.+++|+||+++....+... .+..|..++++|| ++++++++++ ++||||.+.+- T Consensus 178 ~~~~~~~vlf~GD~l~~~~~~~~~~~~~~~~~~~~~~~~Sl-~~l~~l~~~~-v~p~Hg~~~~~ 239 (317) T 2zo4_A 178 FYLEEEGVLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSL-DRLADLGARV-AYAGHFGPIAD 239 (317) T ss_dssp EEETTTTEEEEETSCCSSSCCCCCCCTTSCSCHHHHHHHHH-HHHHTSCCSE-EEESSSSCBSC T ss_pred EEECCCCEEEEECEECCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCCCCCE-EECCCCCCCCC T ss_conf 99868885787048637877866788899888599999999-9986699989-98899997789 No 11 >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Probab=100.00 E-value=9.5e-33 Score=208.76 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=131.4 Q ss_pred CCCCEEEEEECCCCEEEEECCCCCH---HHHHHHHHHC-CCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHH Q ss_conf 6571699998899849998389999---9999999974-99752999869885210110567886079554058438988 Q gi|254780758|r 14 FKQNCTFLFDEESLEAVVVDPGGDL---DIIKDVIQSR-NFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89 (216) Q Consensus 14 ~~~N~~li~~~~~~~~ilID~G~~~---~~i~~~l~~~-~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~ 89 (216) +.+|+|+|.+++ +++|||+|.+. +.+++.+++. +.+|++|++||.|+||+||+..|+++ ++++|+.......+ T Consensus 35 ~~~N~~li~~~~--~~iliDt~~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~~-~~~v~~~~~~~~~~ 111 (232) T 1a7t_A 35 VPSNGMIVINNH--QAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRK-GVQSYANQMTIDLA 111 (232) T ss_dssp EEEEEEEEEETT--EEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHHT-TCEEEEEHHHHHHH T ss_pred ECCEEEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHC-CCEEEEECCHHHHH T ss_conf 275699999899--999996989989999999999871399738999799885222339999858-99599822025565 Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC-CC Q ss_conf 40123444432002346666741896478399762012331012-22472100000123432111100000135663-46 Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT-DI 167 (216) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~t-PGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~-d~ 167 (216) .. .....+...+.++.++.+|+.+++++++ ||||+||+++|++++++||+||.+|.+..... .. T Consensus 112 ~~--------------~~~~~~~~~~~~~~~~~~g~~~v~~~~~~pGHt~g~~~~~~~~~~vlf~GD~~~~~~~~~~~~~ 177 (232) T 1a7t_A 112 KE--------------KGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNI 177 (232) T ss_dssp HH--------------HTCCCCSEEESSEEEEEETTEEEEEECCCCSSSTTCCEEEETTTTEEEEETTSCCTTCCSCCCC T ss_pred HH--------------CCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCC T ss_conf 43--------------2566660541576199989999999842389998727999589999998886278986676889 Q ss_pred CCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHH Q ss_conf 7989999999999998519-99789984887988889 Q gi|254780758|r 168 LHGDYQQLINSINNKILPL-GDEISFVCGHGPNSTIG 203 (216) Q Consensus 168 ~~~d~~~~~~sl~~~l~~l-~~~~~v~PgHG~~tt~~ 203 (216) ++++..+|++||+ +++++ ++...|+||||++..-. T Consensus 178 ~~~~~~~~~~sl~-~l~~~~~~~~~i~pgHG~~~~~~ 213 (232) T 1a7t_A 178 SDADVTAWPKTLD-KVKAKFPSARYVVPGHGNYGGTE 213 (232) T ss_dssp TTCCTTTHHHHHH-HHHHHCTTCSEEEESSSCCBCTH T ss_pred CCCCHHHHHHHHH-HHHCCCCCCEEEECCCCCCCCHH T ss_conf 9999999999999-99712899819993899978989 No 12 >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Probab=100.00 E-value=4.9e-32 Score=204.63 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=130.5 Q ss_pred CCCCEEEEEECCCCEEEEECCCCCH---HHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHH Q ss_conf 6571699998899849998389999---999999997-499752999869885210110567886079554058438988 Q gi|254780758|r 14 FKQNCTFLFDEESLEAVVVDPGGDL---DIIKDVIQS-RNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89 (216) Q Consensus 14 ~~~N~~li~~~~~~~~ilID~G~~~---~~i~~~l~~-~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~ 89 (216) +.+|+++|.+++ .++|||+|... +.+++.+++ .+.++++|++||.|+||++|+..|.+. ++++++.......+ T Consensus 25 ~~~N~~~i~~~~--~~iliD~~~~~~~~~~l~~~i~~~~~~~i~~vi~TH~H~DH~~G~~~~~~~-~~~i~~~~~~~~~~ 101 (223) T 1m2x_A 25 YAANAVYLVTDK--GVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKI-GAKTYSTKMTDSIL 101 (223) T ss_dssp EEEEEEEEEETT--EEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHHT-TCEEEEEHHHHHHH T ss_pred ECCEEEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHC-CCEEEECCCHHHHH T ss_conf 766799999899--899997999989999999999884199758999679997510619999868-99799612044444 Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC-CC Q ss_conf 40123444432002346666741896478399762012331012-22472100000123432111100000135663-46 Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT-DI 167 (216) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~t-PGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~-d~ 167 (216) ... ....++..++++.++.+|+.+++++++ ||||+|++++|++++++||+||.+|.+..... .. T Consensus 102 ~~~--------------~~~~~~~~~~~~~~~~lg~~~i~~~~~~pgHt~~~~~~~~p~~~vlf~GD~~~~~~~~~~~~~ 167 (223) T 1m2x_A 102 AKE--------------NKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYI 167 (223) T ss_dssp HHT--------------TCCCCSEEESSCEEEEETTEEEEEECCCSSSSSSCCEEEETTTTEEEEETTSCCTTCSSCCCC T ss_pred HCC--------------CCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCC T ss_conf 203--------------665674123563389989989998246799999868999479999998276888996774788 Q ss_pred CCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCH Q ss_conf 798999999999999851-99978998488798888 Q gi|254780758|r 168 LHGDYQQLINSINNKILP-LGDEISFVCGHGPNSTI 202 (216) Q Consensus 168 ~~~d~~~~~~sl~~~l~~-l~~~~~v~PgHG~~tt~ 202 (216) +.++..+|++||+ +++. .++...|+||||+++.- T Consensus 168 ~~~~~~~~~~sl~-~l~~~~~~~~~viPgHG~~~~~ 202 (223) T 1m2x_A 168 GEAYVNDWTQSVH-NIQQKFSGAQYVVAGHDDWKDQ 202 (223) T ss_dssp TTCCHHHHHHHHH-HHHHHTTTCSEEEESBSCCCST T ss_pred CCCCHHHHHHHHH-HHHHHCCCCCEEECCCCCCCCH T ss_conf 9989999999999-9970079997999798985898 No 13 >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Probab=100.00 E-value=2.9e-32 Score=205.97 Aligned_cols=176 Identities=20% Similarity=0.268 Sum_probs=134.2 Q ss_pred CCCCEEEEEECCCCEEEEECCCCC---HHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHH Q ss_conf 657169999889984999838999---99999999974-99752999869885210110567886079554058438988 Q gi|254780758|r 14 FKQNCTFLFDEESLEAVVVDPGGD---LDIIKDVIQSR-NFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89 (216) Q Consensus 14 ~~~N~~li~~~~~~~~ilID~G~~---~~~i~~~l~~~-~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~ 89 (216) +++|+++|..++ .++|||+|.+ .+.+++.+++. +.++++|++||.|+||+||+..|.++ ++++|++......+ T Consensus 29 ~~~N~~~i~~~~--~~vlIDtg~~~~~~~~l~~~i~~~~~~~i~~ii~TH~H~DH~gG~~~~~~~-~~~i~a~~~~~~~~ 105 (219) T 3l6n_A 29 YSANSMYLVTKK--GVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNK-GIKTYATAKTNEFL 105 (219) T ss_dssp EEEEEEEEEETT--EEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHHT-TCEEEECHHHHHHH T ss_pred EEEEEEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHC-CCEEEEHHHHHHHH T ss_conf 700599999899--999992989989999999999860299638999799995433868999628-98899602222332 Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-C Q ss_conf 40123444432002346666741896478399762012331012-224721000001234321111000001356634-6 Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTD-I 167 (216) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~t-PGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~d-~ 167 (216) .. .....+...+.+++++.+|+.+++++++ ||||+|++++|+++.++||+||++|....+... . T Consensus 106 ~~--------------~~~~~~~~~~~~~~~~~~g~~~~~v~~~~pgHt~g~~~v~~~~~~vlf~GD~~~~~~~~~~~~~ 171 (219) T 3l6n_A 106 KK--------------DGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADNVVVWFPKYNVLDGGCLVKSNSATDLGYI 171 (219) T ss_dssp HH--------------TTCCCCSEECCTTSEEEETTEEEEEECCCCSSSSSCCEEEETTTTEEEEETTSCCTTCSSCCCC T ss_pred HC--------------CCCCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCC T ss_conf 10--------------1334412882388578628856899724799999858999478999999283778985686888 Q ss_pred CCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHH Q ss_conf 7989999999999998519-997899848879888899988 Q gi|254780758|r 168 LHGDYQQLINSINNKILPL-GDEISFVCGHGPNSTIGRERR 207 (216) Q Consensus 168 ~~~d~~~~~~sl~~~l~~l-~~~~~v~PgHG~~tt~~~e~~ 207 (216) ..+|..+|++||+ +++++ ++...|+||||++..-+.-++ T Consensus 172 ~~~~~~~~~~sl~-~l~~~~~~~~~ivpgHg~~~~~~~i~~ 211 (219) T 3l6n_A 172 KEANVEQWPKTIN-KLKAKYSKATLIIPGHDEWKGGGHVEH 211 (219) T ss_dssp TTCCTTTHHHHHH-HHHHHCTTCSEEEESBSCCTTSCHHHH T ss_pred CCCCHHHHHHHHH-HHHHCCCCCCEEECCCCCCCCHHHHHH T ss_conf 9989999999999-997007999899948998789899999 No 14 >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Probab=100.00 E-value=1.1e-32 Score=208.29 Aligned_cols=192 Identities=17% Similarity=0.187 Sum_probs=138.4 Q ss_pred CCCCEEEEEECCCCC----CCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHC Q ss_conf 977359999708765----7169999889984999838999999999999749975299986988521011056788607 Q gi|254780758|r 1 MSKLSFHIVQVTPFK----QNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLS 76 (216) Q Consensus 1 m~~~~~~~i~v~~~~----~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~ 76 (216) |.---++.||++|.+ +|+|+|.++ +.++|||||..... +.+.. -.+|++|++||.|+||+||+..|++.++ T Consensus 1 ~~~~~~~~i~~~p~~~~~~~n~~li~~~--~~~~lID~G~~~~~--~~~~~-~~~i~~VilTH~H~DH~gg~~~l~~~~~ 75 (261) T 3adr_A 1 MPCRGLHSIPAGPVEFPEIATVYVMCGE--KLTVMIDAGVSNSI--ADFSF-LDKLDYIVLTHLHIDHIGLLPELLQVYK 75 (261) T ss_dssp -CCCEEEEEECSCTTCGGGSEEEEEECS--SCEEEECCCCTTCC--CCCTT-CSCCCEEECSCCSGGGTTTHHHHHHHSC T ss_pred CCCCCEEEEECCCCCCCCEEEEEEEEEC--CEEEEECCCCCHHH--HHHHC-CCCCCEEEECCCCCCCCCCHHHHHHCCC T ss_conf 9878548920798676876899999949--95899879998299--98624-0678999959898644287667654356 Q ss_pred CCEEECCHHHHHHHCCHHH-------------HHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 9554058438988401234-------------444320023466667418964783997620123310122247210000 Q gi|254780758|r 77 LTIIGPHKDDAAMMGKVDE-------------QARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIY 143 (216) Q Consensus 77 ~~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~ 143 (216) +++++.......+...... ....+..............+.+++.+.+|+.+++++++||||+|++++ T Consensus 76 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~~~~~~~~~pGHt~~~~~~ 155 (261) T 3adr_A 76 AKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSV 155 (261) T ss_dssp CEEEEETTCTHHHHSHHHHHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEEEECTTSCTTCEEE T ss_pred CCEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCEEEEEECCCCCCCCEEE T ss_conf 74333787999862501245677888876400001014665555655248833633895066100477579888876899 Q ss_pred CCCCCCCCCCCCHHHH---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 0123432111100000---135663467989999999999998519997899848879888 Q gi|254780758|r 144 VNFENNFAHLGDTLFR---SSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNST 201 (216) Q Consensus 144 ~~~~~~~lftGD~lf~---~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216) +. +++||+||+++. ..+.+++++.+|..++++|| ++++++++++ ++||||++.+ T Consensus 156 ~~--~~vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~sl-~~l~~l~~~~-i~pgHg~~~~ 212 (261) T 3adr_A 156 LV--DDFLFTGDSAGAYFNGVVIPTTPPVIDYKMYMESL-KRQIELKPKV-VGFAHGGLVS 212 (261) T ss_dssp EE--TTEEEEETSSCEEETTEEECCCCSCCCHHHHHHHH-HHHHHTCCSE-EEETTTEEEC T ss_pred EE--CCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCCCCCE-EEECCCCCCC T ss_conf 98--99999898468677886326899998999999999-9997799899-9929998669 No 15 >2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1 Probab=99.97 E-value=1.1e-31 Score=202.70 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=130.3 Q ss_pred CCCCEEEEEECCCCEEEEECCCCCH---HHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHH Q ss_conf 6571699998899849998389999---999999997-499752999869885210110567886079554058438988 Q gi|254780758|r 14 FKQNCTFLFDEESLEAVVVDPGGDL---DIIKDVIQS-RNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89 (216) Q Consensus 14 ~~~N~~li~~~~~~~~ilID~G~~~---~~i~~~l~~-~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~ 89 (216) +.+|+|+|.+++ .++|||+|++. +.+++.+++ .+.+|++|++||.|+||+||+..|+++ ++++++.......+ T Consensus 67 ~~~N~~~v~~~~--~~vlIDtg~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gG~~~~~~~-~~~v~a~~~~~~~~ 143 (266) T 2yz3_A 67 YPSNGLIVRDGD--ELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAA-GVATYASPSTRRLA 143 (266) T ss_dssp EEEEEEEEEETT--EEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHT-TCEEEECHHHHHHH T ss_pred EEEEEEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCHHHHHCC-CCEEEEECCHHHHH T ss_conf 612799999899--999990999989999999999984399727999799981000875565206-97699962022333 Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-C Q ss_conf 4012344443200234666674189647839976201233101-2224721000001234321111000001356634-6 Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH-CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTD-I 167 (216) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~-tPGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~d-~ 167 (216) ... .........+..+.+++++.+|+.+ +++ .||||+|++++|++++++||+||.+|....+... . T Consensus 144 ~~~----------~~~~~~~~~~~~~~~~~~~~~g~v~--~~~~gpgHt~~~~~v~~p~~~vLf~GD~v~~~~~~~~~~~ 211 (266) T 2yz3_A 144 EVE----------GNEIPTHSLEGLSSSGDAVRFGPVE--LFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNV 211 (266) T ss_dssp HTT----------TCCCCSEECCSCSSTTEEEEETTEE--EEECCSSSSSSCCEEEEGGGTEEEEETTSCCTTCCSCCCC T ss_pred HHC----------CCCCCCCCCCEECCCCCEEEECCEE--EEEECCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCC T ss_conf 321----------4667754431460468678878878--8740699999848999889999998646877886788888 Q ss_pred CCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHCHHHH Q ss_conf 7989999999999998519-997899848879888899988281451 Q gi|254780758|r 168 LHGDYQQLINSINNKILPL-GDEISFVCGHGPNSTIGRERRLNPFLK 213 (216) Q Consensus 168 ~~~d~~~~~~sl~~~l~~l-~~~~~v~PgHG~~tt~~~e~~~n~~~~ 213 (216) +.+|...|++|++ +++++ ++...|+||||+++.....+.+.-++| T Consensus 212 ~~~~~~~~~~sl~-~l~~~~pd~~~vvPGHG~~~~~~~l~~~~~~~~ 257 (266) T 2yz3_A 212 ADADLAEWPTSIE-RIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVK 257 (266) T ss_dssp TTCCTTTHHHHHH-HHHHHCTTCSEEEESSSCCBCTHHHHHHHHHC- T ss_pred CCCCHHHHHHHHH-HHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHH T ss_conf 9999999999999-997008998399879999889799999999999 No 16 >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Probab=99.97 E-value=4.1e-31 Score=199.25 Aligned_cols=201 Identities=17% Similarity=0.277 Sum_probs=143.5 Q ss_pred EEECCCCCCCEEEEEECCCCEEEEECCCC--CHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHHHHHHCCCEEEC Q ss_conf 99708765716999988998499983899--99999999997499---75299986988521011056788607955405 Q gi|254780758|r 8 IVQVTPFKQNCTFLFDEESLEAVVVDPGG--DLDIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQLKEDLSLTIIGP 82 (216) Q Consensus 8 ~i~v~~~~~N~~li~~~~~~~~ilID~G~--~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~ 82 (216) +.-||..+.|||+|.+++ .++|||||. +.+.+++.+++.++ +|++|++||.|.||+||+..+.+.+++++++. T Consensus 17 vy~vg~~~~~~~li~~~~--~~iLID~G~~~~~~~i~~~l~~~g~~~~~i~~il~TH~H~DH~gg~~~~~~~~~a~i~~~ 94 (263) T 1k07_A 17 LYYVGTDDLASYLIVTPR--GNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVM 94 (263) T ss_dssp EEECCBSSBCCEEEEETT--EEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCEEEEE T ss_pred EEEECCCCEEEEEEEECC--EEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEEE T ss_conf 999899990999999899--899993989520999999999769995342699978987011141999987539979994 Q ss_pred CHHHHHHHCCHHHHHHHH-HCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC Q ss_conf 843898840123444432-0023466667418964783997620123310122247210000012343211110000013 Q gi|254780758|r 83 HKDDAAMMGKVDEQARLL-SIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSS 161 (216) Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~~~ 161 (216) ..+...+........... .......+...+..+.+++++.+|+.+++++++||||+||+|++++..+.+++||++|.++ T Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~PGHt~g~~~~~~~~~~~~~~~~~~~~gd 174 (263) T 1k07_A 95 DEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGS 174 (263) T ss_dssp HHHHHHHHTTTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEECC T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCEEEEEEECCCCCCCCEEEEEECCCCCEECCEEEECC T ss_conf 05877775211100122023334667776625741674673098579999578878778999998167853878999898 Q ss_pred CCCC--------CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH------HHHHCHHH Q ss_conf 5663--------467989999999999998519997899848879888899------98828145 Q gi|254780758|r 162 IGRT--------DILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGR------ERRLNPFL 212 (216) Q Consensus 162 ~G~~--------d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~~~------e~~~n~~~ 212 (216) .+.. .....+..++.+|| +++.++++++ ++||||..+.+.. +...|+|+ T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~sl-~~l~~l~~~~-vi~gHg~~~~~~~~~~~~~~~~~~~~~ 237 (263) T 1k07_A 175 IGVNPGYKLVDNITYPKIAEDYKHSI-KVLESMRCDI-FLGSHAGMFDLKNKYVLLSKGQNNPFV 237 (263) T ss_dssp CCCCTTCCCSSCSSCTTHHHHHHHHH-HHHHTBCCSE-EEESBHHHHTHHHHHHHHHTTCSCTTB T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHCCCCCE-EEECCCCCCCHHHHHHHHHCCCCCCCC T ss_conf 44788875436889987799999999-9997899399-990989832658899877404778556 No 17 >2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Probab=99.97 E-value=1.3e-31 Score=202.11 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=127.8 Q ss_pred CCCCEEEEEECCCCEEEEECCCCCHH---HHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHH Q ss_conf 65716999988998499983899999---99999997-499752999869885210110567886079554058438988 Q gi|254780758|r 14 FKQNCTFLFDEESLEAVVVDPGGDLD---IIKDVIQS-RNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89 (216) Q Consensus 14 ~~~N~~li~~~~~~~~ilID~G~~~~---~i~~~l~~-~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~ 89 (216) +.+|+|+|.+++ +++|||+|++.+ .+++.+++ .+.+|++|++||.|+||+||+..|+++ ++++++.......+ T Consensus 36 ~~~N~~~i~~~~--~~vlIDtg~~~~~~~~l~~~i~~~~~~~v~~vi~TH~H~DH~gg~~~~~~~-~~~~~~~~~~~~~~ 112 (230) T 2whg_A 36 YPSNGLIVRDGD--ELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAA-GVATYASPSTRRLA 112 (230) T ss_dssp EEEEEEEEEETT--EEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHT-TCEEEECHHHHHHH T ss_pred CCCEEEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHC-CCEEEECHHHHHHH T ss_conf 011899999699--999997989979999999999983199738999779982001609999758-99499878999999 Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC-CCC Q ss_conf 4012344443200234666674189647839976201233101222472100000123432111100000135663-467 Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT-DIL 168 (216) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~-d~~ 168 (216) ... .........+..+.+++.+.+|+.++. +.+||||+||+++|++++++||+||+++....+.. .++ T Consensus 113 ~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~pGHt~g~~~~~~~~~~vlf~GD~v~~~~~~~~~~~~ 181 (230) T 2whg_A 113 EAE----------GNEIPTHSLEGLSSSGDAVRFGPVELF-YPGAAHSTDNLVVYVPSANVLYGGCAVHELSRTSAGNVA 181 (230) T ss_dssp HHH----------TCCCCSEECCSCSSTTCEEEETTEEEE-CCCSSSSTTCCEEEETTTTEEEEETTSCCTTCCSCCCCT T ss_pred HHC----------CCCCCCCCCCEEECCCCEEEECCEEEE-EECCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCC T ss_conf 852----------766764342035036866886786899-837999989799998688999987787457878878889 Q ss_pred CCCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHCHHHH Q ss_conf 989999999999998519-997899848879888899988281451 Q gi|254780758|r 169 HGDYQQLINSINNKILPL-GDEISFVCGHGPNSTIGRERRLNPFLK 213 (216) Q Consensus 169 ~~d~~~~~~sl~~~l~~l-~~~~~v~PgHG~~tt~~~e~~~n~~~~ 213 (216) .+|..+|++|++ +++++ ++...|+||||++.....-+.+--+++ T Consensus 182 ~~~~~~~~~sl~-~l~~~~~~~~~v~PGHG~~~~~~~l~~~~~~~~ 226 (230) T 2whg_A 182 DADLAEWPTSVE-RIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVK 226 (230) T ss_dssp TCCTTTHHHHHH-HHHHHCTTCCEEEESSSCCBSTHHHHHHHHHHH T ss_pred CCCHHHHHHHHH-HHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHH T ss_conf 999999999999-997008998499969998889899999999999 No 18 >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Probab=99.97 E-value=9.1e-31 Score=197.27 Aligned_cols=182 Identities=21% Similarity=0.201 Sum_probs=132.5 Q ss_pred CCCEEEEEECCCCEEEEECCCCCH---HHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHHH Q ss_conf 571699998899849998389999---999999997-4997529998698852101105678860795540584389884 Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGDL---DIIKDVIQS-RNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMM 90 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~~---~~i~~~l~~-~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~ 90 (216) .+|+|+|.+++ .++|||||... +.+++.+++ .+.++++|++||.|+||+||+..|+++ +++++....+ .... T Consensus 40 ~~N~~~I~~~~--~~vlID~g~~~~~~~~l~~~i~~~~~~~v~~ii~TH~H~DH~gg~~~~~~~-~~~i~~~~~~-~~~~ 115 (227) T 1mqo_A 40 PSNGLVLNTSK--GLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKER-GIKAHSTALT-AELA 115 (227) T ss_dssp EEEEEEEEETT--EEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHH-TCEEECBHHH-HHHH T ss_pred EEEEEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHC-CCEEEEECHH-HHHH T ss_conf 14899999799--989994989989999999999974499816999678981023539999747-9989994102-3333 Q ss_pred CCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-CC Q ss_conf 0123444432002346666741896478399762012331012-224721000001234321111000001356634-67 Q gi|254780758|r 91 GKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTD-IL 168 (216) Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~t-PGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~d-~~ 168 (216) .. .........+.+++.+.+|+.+++.++. ||||+|++++|.++.+++|+||.+|..+++..+ .+ T Consensus 116 ~~-------------~~~~~~~~~~~~~~~l~~g~~~~~~~~~~pgHt~~~~~~~~~~~~vl~~GD~i~~~~~~~~~~~~ 182 (227) T 1mqo_A 116 KK-------------NGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVA 182 (227) T ss_dssp HH-------------TTCCCCCCCBCSEEEEEETTEEEEEECCCCSSSSSCCEEEETTTTEEEEETTSCCTTCCSCCCCT T ss_pred HH-------------CCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCC T ss_conf 21-------------25444332125674564188078888227987788458870678859960085679856757889 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCHHHH Q ss_conf 989999999999998519997899848879888899988281451 Q gi|254780758|r 169 HGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213 (216) Q Consensus 169 ~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~~~e~~~n~~~~ 213 (216) .++..+|++||++.+...++...|+|||||+++...-+.+.-+|+ T Consensus 183 ~~~~~~~~~sl~~l~~~~~~~~~vvPgHG~~~~~~~~~~~~~~~~ 227 (227) T 1mqo_A 183 DAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK 227 (227) T ss_dssp TCCHHHHHHHHHHHHHHCCSCSEEEESSSCCBCTHHHHHHHHHTC T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHC T ss_conf 989999999999998337999899959896689899999999869 No 19 >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Probab=99.97 E-value=1.4e-30 Score=196.10 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=123.2 Q ss_pred CCCEEEEEECCCCEEEEECCCCCH---HHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHHHC Q ss_conf 571699998899849998389999---99999999749975299986988521011056788607955405843898840 Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGDL---DIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMG 91 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~~---~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~ 91 (216) .+|+|+|.++ ++++|||||.+. +.+++.+++.+.+|++|++||.|+||++|+..|.++ ++++++.......+.. T Consensus 32 ~~N~~~i~~~--~~~vliDtg~~~~~~~~~~~~i~~~~~~i~~ii~TH~H~DH~gg~~~l~~~-~~~~~a~~~~~~~~~~ 108 (228) T 1jjt_A 32 PKHGLVVLVN--AEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSR-SIPTYASELTNELLKK 108 (228) T ss_dssp EEEEEEEEET--TEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHT-TCCEEEEHHHHHHHHH T ss_pred CCEEEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCHHHHHHHC-CCCEEECHHHHHHHHH T ss_conf 8579999989--999999798998999999999996599857999789980010809999867-9988874667777763 Q ss_pred CHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC Q ss_conf 12344443200234666674189647839976201233101-22247210000012343211110000013566346798 Q gi|254780758|r 92 KVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH-CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHG 170 (216) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~-tPGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~d~~~~ 170 (216) .. ...... ...++.+.+++..+++++ +||||+|++++|+++.+++|+||++|..+++ +++.+ T Consensus 109 ~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~gHt~~~~~~~~~~~~ilf~GD~~~~~~~~--~~~~~ 171 (228) T 1jjt_A 109 DG--------------KVQATN-SFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLG--NLGDA 171 (228) T ss_dssp TT--------------CCCCSE-EECSSCCEEETTTEEEECCCCSSSTTCCEEEETTTTEEEEETTCCTTCCC--CCTTC T ss_pred CC--------------CCCCCC-CCCCCEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEECCCCCCCCCC--CCCCC T ss_conf 13--------------421122-35773599689689999827999999699993475638857772688867--57999 Q ss_pred CHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCH Q ss_conf 999999999999851-99978998488798888 Q gi|254780758|r 171 DYQQLINSINNKILP-LGDEISFVCGHGPNSTI 202 (216) Q Consensus 171 d~~~~~~sl~~~l~~-l~~~~~v~PgHG~~tt~ 202 (216) |..+|++||+ ++++ +++...|+||||++.+- T Consensus 172 ~~~~~~~sl~-~l~~~~~~~~~viPgHG~~~~~ 203 (228) T 1jjt_A 172 NIEAWPKSAK-LLKSKYGKAKLVVPSHSEVGDA 203 (228) T ss_dssp CTTTHHHHHH-HHHHHTTTCSEEEESSSCCBCT T ss_pred CHHHHHHHHH-HHHHHCCCCCEEEECCCCCCCH T ss_conf 9999999999-9996489983999098843598 No 20 >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Probab=99.97 E-value=1.4e-30 Score=196.19 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=128.0 Q ss_pred CCEEEEEEC--------CCCCCCEEEEEECCCCEEEEECCCCCH---HHHHHHHHHC-CCCEEEEEECCCCCCCCCCCHH Q ss_conf 735999970--------876571699998899849998389999---9999999974-9975299986988521011056 Q gi|254780758|r 3 KLSFHIVQV--------TPFKQNCTFLFDEESLEAVVVDPGGDL---DIIKDVIQSR-NFHVKQIWITHGHVDHVGGAAQ 70 (216) Q Consensus 3 ~~~~~~i~v--------~~~~~N~~li~~~~~~~~ilID~G~~~---~~i~~~l~~~-~~~i~~Ii~TH~H~DH~gg~~~ 70 (216) -|+++++.- ..+++|+|++..++ .++|||+|.+. +.+.+.+++. +.++++|++||.|+||+||+.. T Consensus 2 ~~~~~~v~~~vy~~~~~~~~~~N~~~i~~~~--~~vliD~g~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~ 79 (227) T 3iog_A 2 GMSLTQVSGPVYVVEDNYYVQENSMVYFGAK--GVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAY 79 (227) T ss_dssp CEEEEEEETTEEEEEECSSSCEEEEEEECSS--CEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHH T ss_pred CCCEEEECCCEEEEECCCCCCCEEEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHH T ss_conf 8504991698699857972154289999799--86999298997999999999986149984199968999653281233 Q ss_pred HHHHHCCCEEECCHHHHHHHCCHHHHHHH----HHCCCCCCCCCCEEEECCCCEEEEECCCCCCCC-CCCCCCCCCCCCC Q ss_conf 78860795540584389884012344443----200234666674189647839976201233101-2224721000001 Q gi|254780758|r 71 LKEDLSLTIIGPHKDDAAMMGKVDEQARL----LSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH-CPGHSPGHVIYVN 145 (216) Q Consensus 71 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~-tPGHt~g~~~~~~ 145 (216) |++. +++++++......+.......... ...........++..+.+. +.+++.++++++ +|||||||+++|+ T Consensus 80 ~~~~-~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~l~~g~v~~~~~~pGHt~g~~~~~~ 156 (227) T 3iog_A 80 WKSI-GAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGD--FTLQEGKVRAFYAGPAHTPDGIFVYF 156 (227) T ss_dssp HHHT-TCEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCCCCSEEESSC--EEETTTTEEEECCCCSSSSSCCEEEE T ss_pred CCCC-CCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC--EEECCCCEEEEEECCCCCCCCEEEEE T ss_conf 0546-83676179899998741233322222025545787656886886585--88558718999957898998664672 Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCH Q ss_conf 23432111100000135663467989999999999998519--9978998488798888 Q gi|254780758|r 146 FENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPL--GDEISFVCGHGPNSTI 202 (216) Q Consensus 146 ~~~~~lftGD~lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l--~~~~~v~PgHG~~tt~ 202 (216) +++++||+||.++. .++ .++.+|..+|++|+ +++.++ +++ .|+||||++.+- T Consensus 157 ~~~~vlf~GD~~~~-~~~--~~~~~~~~~~~~sl-~~l~~~~~~~~-~i~pgHg~~~~g 210 (227) T 3iog_A 157 PDEQVLYGGCILKE-KLG--NLSFADVKAYPQTL-ERLKAMKLPIK-TVIGGHDSPLHG 210 (227) T ss_dssp TTTTEEECGGGSCS-SCC--CCTTCCTTHHHHHH-HHHHHTCCCCS-EEECSSSCCEEC T ss_pred CCCCEEEECCCCCC-CCC--CCCCCCHHHHHHHH-HHHHCCCCCCC-EEECCCCCCCCC T ss_conf 78789997463578-967--88888999999999-99970379997-999699986789 No 21 >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Probab=99.97 E-value=3.9e-30 Score=193.58 Aligned_cols=187 Identities=17% Similarity=0.262 Sum_probs=137.8 Q ss_pred ECCCCCCCEEEEEECCCCEEEEECCCC--CHHHHHHHHHHCCCC---EEEEEECCCCCCCCCCCHHHHHHHCCCEEECCH Q ss_conf 708765716999988998499983899--999999999974997---529998698852101105678860795540584 Q gi|254780758|r 10 QVTPFKQNCTFLFDEESLEAVVVDPGG--DLDIIKDVIQSRNFH---VKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHK 84 (216) Q Consensus 10 ~v~~~~~N~~li~~~~~~~~ilID~G~--~~~~i~~~l~~~~~~---i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~ 84 (216) .+|....|||+|..++ .++|||||. ..+.+++.+++.|++ |++|++||.|.||+||+++|.+++++++++... T Consensus 32 ~vg~~~~~~~li~~~~--g~iLID~G~~~~~~~~~~~l~~~g~~~~~I~~Il~TH~H~DH~gg~~~l~~~~~~~V~~~~~ 109 (269) T 1sml_A 32 QIGTEDLTALLVQTPD--GAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAE 109 (269) T ss_dssp ECSBTTBCCEEEEETT--EEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHSSCEEEECHH T ss_pred EECCCCEEEEEEEECC--EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCEEEECCCCCCCCCCHHHHHHHHCCCEEECHH T ss_conf 9899992899999899--76998489951299999999974998032549997999835415099999986994763788 Q ss_pred HHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC Q ss_conf 38988401234444320023466667418964783997620123310122247210000012343211110000013566 Q gi|254780758|r 85 DDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGR 164 (216) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~~~~~lftGD~lf~~~~G~ 164 (216) ....+.... ......+......+..+++.+.+|+++.+|+.+++++++|||++|++++++++.+..+++|.+|.+.++. T Consensus 110 ~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~g~~l~lg~~~~~~~~~PgH~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 188 (269) T 1sml_A 110 SAVLLARGG-SDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSA 188 (269) T ss_dssp HHHHHHTTT-CSBTTTBTSSCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCC T ss_pred HHHHHHHCC-HHHHHHCCCCCCCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCC T ss_conf 988775011-1223312356788742525637998885099258999678889788899996345785217998388678 Q ss_pred CCC-------CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 346-------7989999999999998519997899848879888 Q gi|254780758|r 165 TDI-------LHGDYQQLINSINNKILPLGDEISFVCGHGPNST 201 (216) Q Consensus 165 ~d~-------~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216) .++ ...+..++.+|+ ++++.+++++ ++|||+..+. T Consensus 189 ~~~~~~~~~~~~~~~~~~~~sl-~~l~~l~~~~-l~~~H~g~~~ 230 (269) T 1sml_A 189 PGYQLQGNPRYPHLIEDYRRSF-ATVRALPCDV-LLTPHPGASN 230 (269) T ss_dssp TTCCCSSCTTCTTHHHHHHHHH-HHHHTSCCSE-EECSSGGGGT T ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHHCCCCCE-EECCCCCCCC T ss_conf 9968756899986599999999-9997789899-9909987232 No 22 >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Probab=99.96 E-value=3e-29 Score=188.42 Aligned_cols=187 Identities=14% Similarity=0.132 Sum_probs=136.7 Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCH---HHHHHHHHHC-CCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHH Q ss_conf 876571699998899849998389999---9999999974-997529998698852101105678860795540584389 Q gi|254780758|r 12 TPFKQNCTFLFDEESLEAVVVDPGGDL---DIIKDVIQSR-NFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDA 87 (216) Q Consensus 12 ~~~~~N~~li~~~~~~~~ilID~G~~~---~~i~~~l~~~-~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~ 87 (216) +.+.+|++++..++ +.++|||+|... +.+++.+++. +.++++|++||+|+||+||+..|++ .+++++++..... T Consensus 26 ~~~~~n~~~i~~~d-g~viliD~~~~~~~~~~l~~~~~~~~~~~v~~II~TH~H~DH~Gg~~~~~~-~~~~i~a~~~~~~ 103 (246) T 2fhx_A 26 DFYSSNVLVAKMLD-GTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKK-MGAETWSSDLTKQ 103 (246) T ss_dssp TTTTEEEEEEECTT-SEEEEESCCSSHHHHHHHHHHHHHHHCCSEEEEECCSSSHHHHTTHHHHHH-TTCEEEEEHHHHH T ss_pred CCCCCEEEEEECCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHCC-CCCEEEECHHHHH T ss_conf 76761499999389-879999999998999999999997459966999979999653488888524-7965885388889 Q ss_pred HHHCCHHHHHHH------------HHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC Q ss_conf 884012344443------------2002346666741896478399762012331012-224721000001234321111 Q gi|254780758|r 88 AMMGKVDEQARL------------LSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC-PGHSPGHVIYVNFENNFAHLG 154 (216) Q Consensus 88 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~t-PGHt~g~~~~~~~~~~~lftG 154 (216) .+.......... ...........+...+.+++++.+|+..+++++. ||||+++++++.++.+++|+| T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ght~~~~~~~~~~~~vl~~G 183 (246) T 2fhx_A 104 LRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGG 183 (246) T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEETTEEEEEECCCCSSSTTCCEEEETTTTEEEEE T ss_pred HHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCEEEEEEECCCCCCCCCEEEEECCCCEEEEE T ss_conf 98860200001234430111100023566665788607737998999799456764137865678336884789999992 Q ss_pred CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH Q ss_conf 00000135663467989999999999998519997899848879888899 Q gi|254780758|r 155 DTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGR 204 (216) Q Consensus 155 D~lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~~~ 204 (216) |.+|.+.++. .+.+|..+|++|| ++++++++++ ++||||+..+... T Consensus 184 D~~~~~~~~~--~~~~~~~~~~~sL-~~l~~l~~~~-l~pGHG~~~~~~~ 229 (246) T 2fhx_A 184 CMIKPKELGY--LGDANVKAWPDSA-RRLKKFDAKI-VIPGHGEWGGPEM 229 (246) T ss_dssp TTCCSSCCCC--CTTCCTTTHHHHH-HHGGGSCCSE-EEESBSCCBSTHH T ss_pred CEECCCCCCC--CCCCCHHHHHHHH-HHHHCCCCCE-EEECCCCCCCHHH T ss_conf 7617899888--8999999999999-9997799499-9949999899999 No 23 >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Probab=99.96 E-value=1.8e-28 Score=183.95 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=125.2 Q ss_pred CCCCC-CCEEEEEECCCCEEEEECCCCCHHH---HHHHH-HHC-CCCEEEEEECCCCCCCCCCCHHHHHHH-----CCCE Q ss_conf 08765-7169999889984999838999999---99999-974-997529998698852101105678860-----7955 Q gi|254780758|r 11 VTPFK-QNCTFLFDEESLEAVVVDPGGDLDI---IKDVI-QSR-NFHVKQIWITHGHVDHVGGAAQLKEDL-----SLTI 79 (216) Q Consensus 11 v~~~~-~N~~li~~~~~~~~ilID~G~~~~~---i~~~l-~~~-~~~i~~Ii~TH~H~DH~gg~~~l~~~~-----~~~i 79 (216) +..|+ .|+|+|.++++ .+|||||...+. +++.+ ++. +.+|++|++||+|+||+||+..|.+.. ..++ T Consensus 117 vrG~dlaN~~~I~gddG--~IVIDtg~s~e~A~aale~~~~~l~~kPV~aVI~TH~H~DH~GGa~~~~e~~~~~~~~~~I 194 (658) T 2cfu_A 117 VRGFDLANITFIRGDSG--WIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQI 194 (658) T ss_dssp EESSSSSCEEEEECSSS--EEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEE T ss_pred EECCCCCEEEEEEECCE--EEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCHHHHHCCCCCCCCCCEE T ss_conf 97488761899993998--9999799998999999999998657998489998999701057479881354214677428 Q ss_pred EECCHHHHHHHCCH--------HHHHHHHHC--------------------CCCCCCCCCEEEECCCCEEEEECCCCCCC Q ss_conf 40584389884012--------344443200--------------------23466667418964783997620123310 Q gi|254780758|r 80 IGPHKDDAAMMGKV--------DEQARLLSI--------------------RMNARNASSDRWLQDGDTLLLGTHIFKVF 131 (216) Q Consensus 80 ~~~~~~~~~~~~~~--------~~~~~~~~~--------------------~~~~~~~~~~~~l~~gd~i~lg~~~~~vi 131 (216) +++........... .+....++. .......++...+.+++++.+|+.+++++ T Consensus 195 iA~~~~~~~~~~e~~~~~~~~~rRa~~~~g~~lp~~~~g~~~~glg~~~~~~~~~~~~p~~~~~~~~~~l~igG~~~e~i 274 (658) T 2cfu_A 195 IAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQ 274 (658) T ss_dssp EEETTHHHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEEEEEE T ss_pred EEECCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEE T ss_conf 97344689976300110277888998876322785501044534456766686543589658741524677799899999 Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC---CCCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCC Q ss_conf 1222-47210000012343211110000013566346---7989999999999998--519997899848879888 Q gi|254780758|r 132 HCPG-HSPGHVIYVNFENNFAHLGDTLFRSSIGRTDI---LHGDYQQLINSINNKI--LPLGDEISFVCGHGPNST 201 (216) Q Consensus 132 ~tPG-Ht~g~~~~~~~~~~~lftGD~lf~~~~G~~d~---~~~d~~~~~~sl~~~l--~~l~~~~~v~PgHG~~tt 201 (216) ++|| |||+++++|+|+.++||+||.++..-.-...+ +..|+..|.++|.+.+ ..+.+++ ++||||++.. T Consensus 275 ~tPG~HTp~~l~vy~Pe~kvLf~GD~v~~~~~nl~t~rg~~~rd~~~w~~~Ld~l~~l~~~~aev-l~p~Hg~Pi~ 349 (658) T 2cfu_A 275 NTPGTESPAEMNIWLPRQKALLMAENVVGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEV-MFAVHNWPRW 349 (658) T ss_dssp ECTTSSSSSBEEEEETTTTEEECTTTSCSSCCCSSCTTCCCCCCHHHHHHHHHHHHHHTGGGCSE-EECSSSCCEE T ss_pred ECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE-EECCCCCCCC T ss_conf 76899987747999757896874366566665654556776666688999999999860557536-7448987535 No 24 >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Probab=99.96 E-value=5.2e-29 Score=187.03 Aligned_cols=167 Identities=25% Similarity=0.335 Sum_probs=130.8 Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHHHC Q ss_conf 87657169999889984999838999999999999749975299986988521011056788607955405843898840 Q gi|254780758|r 12 TPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMG 91 (216) Q Consensus 12 ~~~~~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~ 91 (216) ..++.|||++..+++. +|||||...+..++.+++.+ ++++|++||.| |++++..+++++++++++...+.. T Consensus 20 ~~~~~n~~lv~~~~g~--vlIDp~~~~~~~~~~l~~~g-~v~~iv~TH~d--H~g~~~~~~~~~~a~i~~~~~~~~---- 90 (201) T 2p97_A 20 RNIDFNGFAWIRPEGN--ILIDPVALSNHDWKHLESLG-GVVWIVLTNSD--HVRSAKEIADQTYTKIAGPVAEKE---- 90 (201) T ss_dssp TTEEEEEEEECCTTCC--EEESCCCCCHHHHHHHHHTT-CCSEEECSSGG--GCTTHHHHHHHSCCEEEEEGGGTT---- T ss_pred CCCCEEEEEEEECCEE--EEEECCCCCHHHHHHHHHCC-CCEEEEECCHH--HHHHHHHHHHHHCCCEEECCCCCC---- T ss_conf 7523089999989985--99949988199999998569-96499988888--988999999987990993142133---- Q ss_pred CHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHCCCCCC----C Q ss_conf 12344443200234666674189647839976201233101222-472100000123432111100000135663----4 Q gi|254780758|r 92 KVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPG-HSPGHVIYVNFENNFAHLGDTLFRSSIGRT----D 166 (216) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPG-Ht~g~~~~~~~~~~~lftGD~lf~~~~G~~----d 166 (216) ..+..++..+++++.+..| ++++++|| ||||+++++. ++++||+||+++..+.|+. + T Consensus 91 --------------~~~~~~d~~~~dg~~~~~g---~~vi~~pG~Ht~g~v~~~~-~~~~Lf~GD~l~~~~~g~~~~~~~ 152 (201) T 2p97_A 91 --------------NFPIYCDRWLSDGDELVPG---LKVMELQGSKTPGELALLL-EETTLITGDLVRAYRAGGLEILPD 152 (201) T ss_dssp --------------SCSSCCSEEECTTCBSSTT---EEEEEECSSSSTTEEEEEE-TTTEEEECSSEEBSSTTSCEECCG T ss_pred --------------CCCCCCCEEECCCCEEEEE---EEEEEECCCCCCCCCCEEE-CCCEEEECCEECCCCCCCCCCCCC T ss_conf --------------3567898884268886501---7999947888999843330-356399898815789997215787 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHH Q ss_conf 6798999999999999851999789984887988-889998 Q gi|254780758|r 167 ILHGDYQQLINSINNKILPLGDEISFVCGHGPNS-TIGRER 206 (216) Q Consensus 167 ~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~t-t~~~e~ 206 (216) +..+|..++++|+ ++|+++.+..+|+||||++- .-+.|+ T Consensus 153 ~~~~d~~~~~~sl-~~l~~l~~~~~i~pgHG~pi~~~~~~~ 192 (201) T 2p97_A 153 EKLMNKQKVVASV-RRLAALEKVEAVLVGDGWSVFRDGRDR 192 (201) T ss_dssp GGCSCHHHHHHHH-HHHHTCTTCCEEEESBBCCBCSCHHHH T ss_pred CCCCCHHHHHHHH-HHHHCCCCCCEEECCCCCHHHCCHHHH T ss_conf 6677999999999-999617999699958997320699999 No 25 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Probab=99.96 E-value=1.2e-28 Score=185.05 Aligned_cols=170 Identities=16% Similarity=0.115 Sum_probs=122.1 Q ss_pred CCCEEEEEECCCCEEEEECCCCC--HHHHHHHHHHC-C-CCEEEEEECCCCCCCCCCCHHHHHHHC-CCEEECCHHHHHH Q ss_conf 57169999889984999838999--99999999974-9-975299986988521011056788607-9554058438988 Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGD--LDIIKDVIQSR-N-FHVKQIWITHGHVDHVGGAAQLKEDLS-LTIIGPHKDDAAM 89 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~~-~-~~i~~Ii~TH~H~DH~gg~~~l~~~~~-~~i~~~~~~~~~~ 89 (216) .-|||||.++ +.+|||||.. .+.+++.+++. + .+|++|++||.|+||+||++.|.++++ ++++++..... . T Consensus 40 s~NsYLI~~e---~~vLIDtg~~~~~~~~l~~i~~~i~~~~I~~II~TH~H~DH~ggl~~l~~~~p~a~i~~~~~~~~-~ 115 (414) T 2q9u_A 40 SYNSYFIDDE---CPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQE-H 115 (414) T ss_dssp EECCEEECSS---SCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEEECHHHHH-H T ss_pred EEEEEEEECC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHH-H T ss_conf 7999999669---88999099801699999999975698779989969096647602999998788987997589998-8 Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHCC-CCCCCC Q ss_conf 401234444320023466667418964783997620123310122-247210000012343211110000013-566346 Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP-GHSPGHVIYVNFENNFAHLGDTLFRSS-IGRTDI 167 (216) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tP-GHt~g~~~~~~~~~~~lftGD~lf~~~-~G~~d~ 167 (216) +... + .......+.+++++++.+|+.+++++++| |||+|++++|.+++++||+||++.... .+.... T Consensus 116 ~~~~------~-----~~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH~~~~~~~y~~~~~iLfsGD~~~~~~~~~~~~~ 184 (414) T 2q9u_A 116 LKIL------Y-----GMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWA 184 (414) T ss_dssp HHHH------H-----CCTTCCEEECCTTCCEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETTTCCCCCCSCCBG T ss_pred HHHH------C-----CCCCCCEEEECCCCEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCC T ss_conf 8874------3-----8986525871589889756558999703689868978999989896894574566788876765 Q ss_pred CC-------------------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 79-------------------89999999999998519997899848879888 Q gi|254780758|r 168 LH-------------------GDYQQLINSINNKILPLGDEISFVCGHGPNST 201 (216) Q Consensus 168 ~~-------------------~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216) .. ....++.++| ++|..|+.++ |+|||||... T Consensus 185 ~~~~~~~~~~~~~~y~~~~~~p~~~~~~~~L-ekl~~Ldi~~-I~PgHGpi~r 235 (414) T 2q9u_A 185 DECDVSHVMHLFKEYTANILGLFSAQMRKAL-EVASTVEIKY-ILSAHGVSWR 235 (414) T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCHHHHHHHH-HHHHTSCCSE-EEESSSCBEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCCCCE-EEECCCCEEC T ss_conf 3234266799999998773022399999999-9975789789-9808967244 No 26 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=99.96 E-value=3.2e-28 Score=182.48 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=117.9 Q ss_pred CCCEEEEEECCCCEEEEECCCCC--HHHHHHHHHH----CC-CCEEEEEECCCCCCCCCCCHHHHHHHCC-CEEECCHHH Q ss_conf 57169999889984999838999--9999999997----49-9752999869885210110567886079-554058438 Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGD--LDIIKDVIQS----RN-FHVKQIWITHGHVDHVGGAAQLKEDLSL-TIIGPHKDD 86 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~----~~-~~i~~Ii~TH~H~DH~gg~~~l~~~~~~-~i~~~~~~~ 86 (216) ..|||+|.+++ .++|||||.. .+.+++.+++ .+ .+|++|++||.|+||+||++.+.++++. ++++++... T Consensus 34 s~NsYlI~~~~--~~~LIDtG~~~~~~~~~~~l~~~~~~i~~~~I~~Ii~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~ 111 (404) T 2ohh_A 34 TYNAYLVCGDE--GVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAV 111 (404) T ss_dssp EECCEEEECSS--CEEEECCCCTTCHHHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHSTTCCEEECHHHH T ss_pred EEEEEEEECCC--EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHH T ss_conf 58999997198--2599919898438999999999986479656869998999987541199999877998899678888 Q ss_pred HHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHCCC--C Q ss_conf 988401234444320023466667418964783997620123310122-2472100000123432111100000135--6 Q gi|254780758|r 87 AAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP-GHSPGHVIYVNFENNFAHLGDTLFRSSI--G 163 (216) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tP-GHt~g~~~~~~~~~~~lftGD~lf~~~~--G 163 (216) ..+... ...........+.+|+++.+|+.+++++++| ||++|++++|+++.++||+||++....+ + T Consensus 112 ~~l~~~-----------~~~~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH~~~~~~~~~~~~~iLfsgD~~g~~~~~~~ 180 (404) T 2ohh_A 112 KGLLKH-----------YPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQ 180 (404) T ss_dssp HHHHHH-----------CGGGGGSCEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEEETTTEEECTTTTCCCCCCSC T ss_pred HHHHHH-----------CCCCCCHHHEECCCCCEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCC T ss_conf 777752-----------677762331322579889737615899952688989968999889999997976666778864 Q ss_pred CCCCCCC------------------CHHHHHHHHHHHHHCCC----CCEEEEECCCCCCC Q ss_conf 6346798------------------99999999999985199----97899848879888 Q gi|254780758|r 164 RTDILHG------------------DYQQLINSINNKILPLG----DEISFVCGHGPNST 201 (216) Q Consensus 164 ~~d~~~~------------------d~~~~~~sl~~~l~~l~----~~~~v~PgHG~~tt 201 (216) ..+...+ ...++++++ ++|..|. .+ .|+|||||.-+ T Consensus 181 ~~~~~~~~~~~~~~~~~yy~~i~~p~~~~~~~~l-~~l~~L~~~~~i~-~I~PgHGpv~~ 238 (404) T 2ohh_A 181 RLDREIPEYILMDAARKFYANLITPLSKLVLKKF-DEVKELGLLERIQ-MIAPSHGQIWT 238 (404) T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHH-HHHHHTTCGGGCS-EEECSSSCBBS T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCCCC-EEECCCCHHHC T ss_conf 1014456302377775436450267689999999-9998664667863-99627702756 No 27 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Probab=99.95 E-value=4e-28 Score=181.92 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=119.8 Q ss_pred CCCEEEEEECCCCEEEEECCCCC--HHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHHH Q ss_conf 57169999889984999838999--99999999974--997529998698852101105678860795540584389884 Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGD--LDIIKDVIQSR--NFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMM 90 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~~--~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~ 90 (216) ..|||||.++ +.+|||||.. .+.+++.|++. ..+|++|++||.|+||+||++.|.++++...+..++.....+ T Consensus 35 ~~NsYlI~~~---~~vLIDtg~~~~~~~~~~~l~~~~~~~~I~~Ii~TH~H~DH~Gg~~~l~~~~p~~~v~~~~~~~~~~ 111 (398) T 1ycg_A 35 TYNAYLIVDD---KTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSL 111 (398) T ss_dssp EECCEEECSS---SCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEEEECHHHHHHH T ss_pred EEEEEEEECC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHH T ss_conf 7999999729---9999949984679999999997559768659992789867770599999868999899689999877 Q ss_pred CCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC--- Q ss_conf 01234444320023466667418964783997620123310122-24721000001234321111000001356634--- Q gi|254780758|r 91 GKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP-GHSPGHVIYVNFENNFAHLGDTLFRSSIGRTD--- 166 (216) Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tP-GHt~g~~~~~~~~~~~lftGD~lf~~~~G~~d--- 166 (216) ... ..........+.+++++.+|+..++++++| ||+|+++++|.++.++||+||+.....+.... T Consensus 112 ~~~-----------~~~~~~~~~~~~~g~~l~lg~~~~~~~~~p~~h~~~~~~~~~~~~~iLfsgD~~~~~~~~~~~~~d 180 (398) T 1ycg_A 112 KAH-----------YSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDD 180 (398) T ss_dssp HHH-----------TCSCCCEEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETTTCCCCCCSCCBGG T ss_pred HHH-----------CCCCCCCCEEECCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCC T ss_conf 640-----------246775506825998898168159999789888888579998898889918846767788653031 Q ss_pred -----------------CCCCCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCC Q ss_conf -----------------679899999999999985199978-99848879888 Q gi|254780758|r 167 -----------------ILHGDYQQLINSINNKILPLGDEI-SFVCGHGPNST 201 (216) Q Consensus 167 -----------------~~~~d~~~~~~sl~~~l~~l~~~~-~v~PgHG~~tt 201 (216) ....+..++.++| +++..|+.+. .|+|||||... T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~l~~L~l~i~~I~PgHGpv~~ 232 (398) T 1ycg_A 181 QVDAGLIMDEAAKYYANILMPFSNLITKKL-DEIQKINLAIKTIAPSHGIIWR 232 (398) T ss_dssp GSCHHHHHHHHHHHHHHHTGGGHHHHHHHH-HHHHHTTCCCSEEEESSSCBBC T ss_pred CCCHHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHHHCCCCCCEEEECCCCHHH T ss_conf 122145689875312100368789999999-9998659982499708986320 No 28 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Probab=99.95 E-value=7e-28 Score=180.48 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=121.6 Q ss_pred CCCC--CEEEEEECCCCEEEEECCCCC--HHHHHHHHHHC-C-CCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHH Q ss_conf 7657--169999889984999838999--99999999974-9-9752999869885210110567886079554058438 Q gi|254780758|r 13 PFKQ--NCTFLFDEESLEAVVVDPGGD--LDIIKDVIQSR-N-FHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDD 86 (216) Q Consensus 13 ~~~~--N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~~-~-~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~ 86 (216) |.++ |||||.++ +++|||||.. .+.+++.+++. + .+|++|++||.|+||+||++.|.++++...++.++.. T Consensus 30 ~~G~s~N~YlI~~e---~~vLIDtg~~~~~~~~~~~l~~~i~~~~I~~II~TH~H~DHiggl~~l~~~~~~~~v~~~~~~ 106 (402) T 1e5d_A 30 PMGTTYNAYLVEDE---KTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLG 106 (402) T ss_dssp TTCEEEEEEEECSS---SCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHCCSEEEEEHHH T ss_pred CCCEEEEEEEEECC---CEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHH T ss_conf 99628999999769---999995998246999999999756987888899399966788679999997799989975778 Q ss_pred HHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC Q ss_conf 988401234444320023466667418964783997620123310122-2472100000123432111100000135663 Q gi|254780758|r 87 AAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP-GHSPGHVIYVNFENNFAHLGDTLFRSSIGRT 165 (216) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tP-GHt~g~~~~~~~~~~~lftGD~lf~~~~G~~ 165 (216) ...+... ......+...+.+|+++.+|+.+++++++| +|+++++++|.++.+++|+||.+....+... T Consensus 107 ~~~~~~~-----------~~~~~~~~~~~~~g~~l~~g~~~l~~i~~p~~h~~~~~~~~~~~~~ilfsgD~~~~~~~~~~ 175 (402) T 1e5d_A 107 QKAMESH-----------FHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISNDIFGQNIAASE 175 (402) T ss_dssp HHHHHHH-----------HCCSSCCEEEECTTCEEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETTTCCCCCCSC T ss_pred HHHHHHC-----------CCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCC T ss_conf 8887731-----------46766432002586389848936899967777778966999868880770454567778876 Q ss_pred ---C-----------------CCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCHHH Q ss_conf ---4-----------------679899999999999985--19997899848879888899 Q gi|254780758|r 166 ---D-----------------ILHGDYQQLINSINNKIL--PLGDEISFVCGHGPNSTIGR 204 (216) Q Consensus 166 ---d-----------------~~~~d~~~~~~sl~~~l~--~l~~~~~v~PgHG~~tt~~~ 204 (216) + +...+..++.++| +++. .++.++ |+|||||...-.+ T Consensus 176 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~L-~~l~~l~l~~~~-I~PgHGpv~~~~~ 234 (402) T 1e5d_A 176 RFSDQIPVHTLERAMREYYANIVNPYAPQTLKAI-ETLVGAGVAPEF-ICPDHGVIFRGAD 234 (402) T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTGGGHHHHHHHH-HHHHHTTCCCSE-EEESSSCBEESHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHCCCCCCE-EEECCCCEECCHH T ss_conf 2234454456899987656540576399999999-999866998138-9636843015837 No 29 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Probab=99.95 E-value=6.5e-27 Score=174.88 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=117.0 Q ss_pred CCEEEEEECCCCEEEEECCCCC--HHHHHHHHHHC-C-CCEEEEEECCCCCCCCCCCHHHHHHHC--CCEEECCHHHHHH Q ss_conf 7169999889984999838999--99999999974-9-975299986988521011056788607--9554058438988 Q gi|254780758|r 16 QNCTFLFDEESLEAVVVDPGGD--LDIIKDVIQSR-N-FHVKQIWITHGHVDHVGGAAQLKEDLS--LTIIGPHKDDAAM 89 (216) Q Consensus 16 ~N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~~-~-~~i~~Ii~TH~H~DH~gg~~~l~~~~~--~~i~~~~~~~~~~ 89 (216) -|||||.+++ +++|||||.. .+.+++.+++. + .+|++|++||.|+||+||++.|+++++ ++++++ +....+ T Consensus 52 ~NsYLI~~~~--~~vLIDtg~~~~~~~~l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~~~~~~i~~~-~~~~~~ 128 (410) T 1vme_A 52 YNAYLVKLNG--ANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIAS-NFGKRL 128 (410) T ss_dssp EEEEEEECSS--CEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEEC-HHHHHH T ss_pred EEEEEEEECC--EEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC-HHHHHH T ss_conf 9999999799--5799919975679999999997579767689994939653775499999970999899978-888642 Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC Q ss_conf 4012344443200234666674189647839976201233101222-472100000123432111100000135663467 Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPG-HSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL 168 (216) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPG-Ht~g~~~~~~~~~~~lftGD~lf~~~~G~~d~~ 168 (216) +... + .......+++|+++++|+.+++++++|| |+|+++++|. .+++|+||++....++.. +. T Consensus 129 ~~~~------~-------~~~~~~~v~~g~~l~lG~~~l~~i~~P~~H~p~~~~~y~--~~iLFsgD~~g~~~~~~~-~~ 192 (410) T 1vme_A 129 LEGF------Y-------GIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGGGYLLPEI-LD 192 (410) T ss_dssp HHHH------H-------CCCCCEECCTTCEEEETTEEEEEEECTTSSSTTCEEEEE--TTEEEEETTTCCSSCCSS-SB T ss_pred HHHC------C-------CCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCEEE--CCEEEECCCCCCCCCCCC-CC T ss_conf 0101------6-------765316835799998667269999789988899710212--898998863435677873-24 Q ss_pred CCC----------------------HHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 989----------------------999999999998519997899848879888 Q gi|254780758|r 169 HGD----------------------YQQLINSINNKILPLGDEISFVCGHGPNST 201 (216) Q Consensus 169 ~~d----------------------~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216) ..+ ..++.++| +++..|+.++ |+|||||.-. T Consensus 193 d~~~~~~e~~~~~~~~yy~~i~~p~~~~v~~~L-~ki~~L~i~~-I~PgHGpiir 245 (410) T 1vme_A 193 DSNESVVERYLPHVTKYIVTVIGHYKNYILEGA-EKLSSLKIKA-LLPGHGLIWK 245 (410) T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGHHHHHHHH-HHHHTSCCSE-EEESSSCBBS T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHCCCCCE-EECCCCHHHH T ss_conf 764025678899999998875063289999999-9986599889-9608806776 No 30 >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Probab=99.95 E-value=5.4e-28 Score=181.15 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=113.3 Q ss_pred CCCEEEEEECCCCEEEEECCCCCH----------------HHHHHHHHHCCCC---EEEEEECCCCCCCCCCCHHHHH-- Q ss_conf 571699998899849998389999----------------9999999974997---5299986988521011056788-- Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGDL----------------DIIKDVIQSRNFH---VKQIWITHGHVDHVGGAAQLKE-- 73 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~~----------------~~i~~~l~~~~~~---i~~Ii~TH~H~DH~gg~~~l~~-- 73 (216) .+|||||..++ ..+|||+|... ..+++.|++.|++ |++|++||.|.||+||+..... T Consensus 47 ~~~~~LI~~~~--~~iLiDtG~g~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dId~VilTH~H~DH~Ggl~~~~~~~ 124 (280) T 3esh_A 47 PTHPILIQTAQ--YNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHA 124 (280) T ss_dssp ECCCEEEECSS--CEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCC T ss_pred EEEEEEEEECC--EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCCHHHCCCCC T ss_conf 78899999299--0599962899622355323335776310699999984999799989976789665458800024751 Q ss_pred HHCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCC-EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCC Q ss_conf 60795540584389884012344443200234666674-18964783997620123310122247210000012--3432 Q gi|254780758|r 74 DLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS-DRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF--ENNF 150 (216) Q Consensus 74 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~--~~~~ 150 (216) .++...++.++........................... ...++++..+ ..+ +++++||||||||++++++ ++++ T Consensus 125 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g--i~vi~tPGHTpGh~~~~v~~~~~~v 201 (280) T 3esh_A 125 IFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEP-VPG--IKMQHSGGHSFGHTIITIESQGDKA 201 (280) T ss_dssp SSTTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESSEECS-STT--EEEEECCSSSTTCEEEEEEETTEEE T ss_pred CCCCCEEEECHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEECCCCEEE-CCC--CEEEECCCCCCCCEEEEEEECCCEE T ss_conf 5787689950146422028231220232112344333523531488076-488--6798559989888899999599179 Q ss_pred CCCCCHHHHCCCCCCCCC---CCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCC Q ss_conf 111100000135663467---98999999999999851--999789984887988 Q gi|254780758|r 151 AHLGDTLFRSSIGRTDIL---HGDYQQLINSINNKILP--LGDEISFVCGHGPNS 200 (216) Q Consensus 151 lftGD~lf~~~~G~~d~~---~~d~~~~~~sl~~~l~~--l~~~~~v~PgHG~~t 200 (216) +|+||+++..+..++++. ..|+.+.++|.+ +++. ...+++|+|||+|.. T Consensus 202 lf~GD~~~~~~~~~p~~~~~~d~d~~~a~~s~~-~ll~~~~~~~~~v~~~H~~~~ 255 (280) T 3esh_A 202 VHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKE-RMIPYFIQQQYWFLFYHDENY 255 (280) T ss_dssp EECGGGSCSGGGCSTTCCCTTCSCHHHHHHHHH-HHHHHHHHTTCEEECSSCSSE T ss_pred EEEEECCCHHHCCCCCCEECCCCCHHHHHHHHH-HHHHHHHHCCCEEEEECCCCC T ss_conf 999824341102698835546689999999999-999999748989999789986 No 31 >3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Probab=99.94 E-value=1.5e-26 Score=172.77 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=115.5 Q ss_pred CCEEEEEECCCCEEEEECCCCC--HHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHHHC Q ss_conf 7169999889984999838999--999999999749--975299986988521011056788607955405843898840 Q gi|254780758|r 16 QNCTFLFDEESLEAVVVDPGGD--LDIIKDVIQSRN--FHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMG 91 (216) Q Consensus 16 ~N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~~~--~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~ 91 (216) .|||||.+ .+.+|||||.. .+.+++.+++.. .+|++|++||.|.||+||++.+++.++...++.+......+. T Consensus 43 ~N~YlI~~---d~~vLIDtG~~~~~~~~l~~~~~~~~~~~I~~IilTH~H~DH~Ggl~~~~~~~p~~~v~~~~~~~~~l~ 119 (262) T 3hnn_A 43 SNSYVIEG---DKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPAAGDLR 119 (262) T ss_dssp EEEEEEES---SSEEEECCCCHHHHHHHHHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHCTTCEEEECHHHHHHHH T ss_pred EEEEEEEC---CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH T ss_conf 89999932---999999189755799999999963784258899959977777622599997444857997789998887 Q ss_pred CHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEE-CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCCC Q ss_conf 123444432002346666741896478399762-012331012-2247210000012343211110000013566-3467 Q gi|254780758|r 92 KVDEQARLLSIRMNARNASSDRWLQDGDTLLLG-THIFKVFHC-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGR-TDIL 168 (216) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg-~~~~~vi~t-PGHt~g~~~~~~~~~~~lftGD~lf~~~~G~-~d~~ 168 (216) .. + .........+.+++.+.++ +..++++.+ |||++|++++|.+++++||+||.+....++. +... T Consensus 120 ~~------~-----~~~~~~~~~~~~gd~~~~~~g~~l~~i~~~~~H~~~~~~~y~~~~~vLftgD~~~~~~~~~~~~~~ 188 (262) T 3hnn_A 120 AA------F-----PDDNLNILPMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVFDD 188 (262) T ss_dssp HH------S-----SSSCCEEEECCSSCEEECSTTCEEEEEECCCSSCTTCEEEEETTTTEEEEETTTCCCCCCSCCEES T ss_pred HH------H-----CCCCCCCCEECCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCC T ss_conf 65------2-----356643220025514762278237999668999899629998788869966634567788655067 Q ss_pred -----------------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC Q ss_conf -----------------98999999999999851999789984887988 Q gi|254780758|r 169 -----------------HGDYQQLINSINNKILPLGDEISFVCGHGPNS 200 (216) Q Consensus 169 -----------------~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~t 200 (216) ..+..++.+|| +++.+|+.++ |+|||||.. T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~sL-~~l~~L~~~~-I~PgHGpvi 235 (262) T 3hnn_A 189 NWESFKEDQRYYFNCLMAPHAIHVEAAL-EKISDLQVRL-YAVGHGPLV 235 (262) T ss_dssp CGGGTHHHHHHHHHHHTGGGHHHHHHHH-HHHTTSCCSE-EEESSSSEE T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHCCCCCE-EECCCCCHH T ss_conf 7167899999999985052499999999-9987899899-995798245 No 32 >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Probab=99.94 E-value=5.1e-27 Score=175.48 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=117.7 Q ss_pred CCCCEEEEEECCCC-------------------CCCEEEEEECCCCEEEEECCCCCH----------------------- Q ss_conf 97735999970876-------------------571699998899849998389999----------------------- Q gi|254780758|r 1 MSKLSFHIVQVTPF-------------------KQNCTFLFDEESLEAVVVDPGGDL----------------------- 38 (216) Q Consensus 1 m~~~~~~~i~v~~~-------------------~~N~~li~~~~~~~~ilID~G~~~----------------------- 38 (216) |...+++.++.|.+ -.+||||..++ ..+|||+|... T Consensus 5 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~pv~~~LI~~~~--g~iLiDtG~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254) T 3dha_A 5 MTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLETEE--GPILVDTGMPESAVNNEGLFNGTFVEGQILPKMT 82 (254) T ss_dssp CCBSEEEEEEEEEEEEEGGGTSTTSCSCCEEEEEEEEEEEEETT--EEEEECCCCCGGGBTCTTTTTTSTTTTTEEEEBC T ss_pred CCEEEEEEECCCEEEECHHHCCCCCCCCCEEEEEEEEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 34148999538659988688056799996698634899999899--5199959889553223311254211123565656 Q ss_pred --HHHHHHHHHCCCC---EEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEE Q ss_conf --9999999974997---52999869885210110567886079554058438988401234444320023466667418 Q gi|254780758|r 39 --DIIKDVIQSRNFH---VKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDR 113 (216) Q Consensus 39 --~~i~~~l~~~~~~---i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (216) +.+.+.|++.|++ |++|++||.|.||+||+..|. ++++++.+.+-..+....... .....+..... T Consensus 83 ~~~~l~~~L~~~G~~p~dI~~Vi~TH~H~DH~Gg~~~f~---~A~i~~~~~e~~~~~~~~~~~------~~~~~~~~~~~ 153 (254) T 3dha_A 83 EEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFT---NTPIIVQRTEYEAALHREEYM------KECILPHLNYK 153 (254) T ss_dssp GGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTGGGCS---SSCEEEEHHHHHHHHHCTTSC------GGGSCTTSCEE T ss_pred HHHHHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCCCCC---CCCCCCCHHHHHHHHCCCHHH------HHCCCCCCCEE T ss_conf 066899999984999799969990799721027531135---642003888999874721110------11047655538 Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHCCC- Q ss_conf 964783997620123310122247210000012---3432111100000135--6634679899999999999985199- Q gi|254780758|r 114 WLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF---ENNFAHLGDTLFRSSI--GRTDILHGDYQQLINSINNKILPLG- 187 (216) Q Consensus 114 ~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~---~~~~lftGD~lf~~~~--G~~d~~~~d~~~~~~sl~~~l~~l~- 187 (216) .++ ++.-.+++ ++++++||||+||++++++ +.++||+||+++.... .....+..|..++++|+ ++++.+. T Consensus 154 ~~~-~~~~~~~g--i~v~~tpGHT~G~~~~~v~~~~~~~vl~~GD~~~~~~~~~~~~~~~~~d~~~~~~sl-~~l~~l~~ 229 (254) T 3dha_A 154 IIE-GDYEVVPG--VQLLYTPGHSPGHQSLFIETEQSGSVLLTIDASYTKENFEDEVPFAGFDPELALSSI-KRLKEVVK 229 (254) T ss_dssp EEC-SSEEEETT--EEEEECCSSSTTCEEEEEEETTTEEEEEEETTCSSHHHHHSCCCCSCSCHHHHHHHH-HHHHHHHH T ss_pred EEE-CCEEECCC--EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHC T ss_conf 960-75376187--498245899942389999828998899996778852226789986788999999999-99985502 Q ss_pred -CCEEEEECCCC Q ss_conf -97899848879 Q gi|254780758|r 188 -DEISFVCGHGP 198 (216) Q Consensus 188 -~~~~v~PgHG~ 198 (216) ...+|+|||.| T Consensus 230 ~~~~~i~pgHd~ 241 (254) T 3dha_A 230 KEKPIIFFGHDI 241 (254) T ss_dssp HHCCEEEESSCH T ss_pred CCCCEEEECCCH T ss_conf 799799958883 No 33 >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Probab=99.92 E-value=9.2e-26 Score=168.20 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=111.1 Q ss_pred CCEEEEEECCCCEEEEECCCCCH------------------------HHHHHHHHHCCCC---EEEEEECCCCCCCCCCC Q ss_conf 71699998899849998389999------------------------9999999974997---52999869885210110 Q gi|254780758|r 16 QNCTFLFDEESLEAVVVDPGGDL------------------------DIIKDVIQSRNFH---VKQIWITHGHVDHVGGA 68 (216) Q Consensus 16 ~N~~li~~~~~~~~ilID~G~~~------------------------~~i~~~l~~~~~~---i~~Ii~TH~H~DH~gg~ 68 (216) .|||||..+++ .+|||||... +.+.+.|++.|++ |++|++||.|+||+||+ T Consensus 43 v~~~LI~~~~g--~iLvDtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dI~~VilTH~H~DH~Ggl 120 (276) T 2r2d_A 43 VSAYLIQCTDA--TVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAGCV 120 (276) T ss_dssp EEEEEEECSSC--EEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTSTTG T ss_pred EEEEEEEECCE--EEEEECCCCHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCCC T ss_conf 58999994990--4999578884551243334302221155456532029999998399979998998479960423741 Q ss_pred HHHHHHHCCCEEECCHHHHHHHCCHHHHH--H-HH--HCCC-CCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 56788607955405843898840123444--4-32--0023-46666741896478399762012331012224721000 Q gi|254780758|r 69 AQLKEDLSLTIIGPHKDDAAMMGKVDEQA--R-LL--SIRM-NARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVI 142 (216) Q Consensus 69 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~-~~--~~~~-~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~ 142 (216) +.|. +++++++..+-........... . .. .... ............+.....+++-...++.+|||||||++ T Consensus 121 ~~f~---~a~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~pGHTpGh~~ 197 (276) T 2r2d_A 121 EYFG---KSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGHASGMLG 197 (276) T ss_dssp GGCS---SSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEETTEEEEEEESSSSSSEEE T ss_pred CCCC---CCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEECCEEEEECCCCCCCCCEE T ss_conf 3578---6300038999998640123443345300455433104444565551268825970997886688998710689 Q ss_pred CCCC---CCCCCCCCCHHHHC-CCCCCC---CCCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHHHCHHH Q ss_conf 0012---34321111000001-356634---679899999999999985199--9789984887988889998828145 Q gi|254780758|r 143 YVNF---ENNFAHLGDTLFRS-SIGRTD---ILHGDYQQLINSINNKILPLG--DEISFVCGHGPNSTIGRERRLNPFL 212 (216) Q Consensus 143 ~~~~---~~~~lftGD~lf~~-~~G~~d---~~~~d~~~~~~sl~~~l~~l~--~~~~v~PgHG~~tt~~~e~~~n~~~ 212 (216) +++. +.+++|+||+++.. ++.+.. ....|..++.+|++ +++.+. ....|+|||+|..--..+|..+.|+ T Consensus 198 ~~v~~~~~~~vl~~GD~~~~~~~~~~~~~~~~~~~d~~~~~~sl~-~l~~l~~~~~~~vipgHd~~~~~~~~k~~~~~y 275 (276) T 2r2d_A 198 LAVRLEKQPGFLLVSDACYTATNYGPPARRAGVLHDTIGYDRTVS-HIRQYAESRSLTVLFGHDREQFASLIKSTDGFY 275 (276) T ss_dssp EEEECSSSCEEEEEETTSCCHHHHSSSCCCCSSCSCHHHHHHHHH-HHHHHHHHTTCEEEESSCHHHHHHSCCTTTCCB T ss_pred EEEEECCCCEEEEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCC T ss_conf 999957999799995864617552898887766689999999999-999663358988993849899878861567777 No 34 >1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Probab=99.92 E-value=2e-25 Score=166.17 Aligned_cols=187 Identities=17% Similarity=0.214 Sum_probs=117.2 Q ss_pred CCCEEEEEECCCC-------C---CCEEEEEECCCCEEEEECCCC--CHHHHHHHHHHCCC---CEEEEEECCCCCCCCC Q ss_conf 7735999970876-------5---716999988998499983899--99999999997499---7529998698852101 Q gi|254780758|r 2 SKLSFHIVQVTPF-------K---QNCTFLFDEESLEAVVVDPGG--DLDIIKDVIQSRNF---HVKQIWITHGHVDHVG 66 (216) Q Consensus 2 ~~~~~~~i~v~~~-------~---~N~~li~~~~~~~~ilID~G~--~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~g 66 (216) .-|+++++..|.. . +||++|..++ +.+|||||. ..+.+++.|++.++ +|++|++||.|+||+| T Consensus 11 ~~m~~~~~~~g~~~~~~~~~~~~~~~~~li~~~~--~~iLIDtG~~~~~~~l~~~l~~~g~~~~~I~~Ii~TH~H~DH~g 88 (221) T 1ztc_A 11 HHMELKILVTGGNVFVPGRLNAHFSTVVYLEHKD--RRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIF 88 (221) T ss_dssp CCEEEEEEECCBEEEETTTEECCBCCEEEEEETT--EEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHG T ss_pred CEEEEEEEECCCCEECCCCCCCCCEEEEEEEECC--EEEEEECCCCCCHHHHHHHHHHCCCCHHHCCEEEECCCCCCCCC T ss_conf 5369899981897545886678823799999899--99999199972199999999984999689849995998724445 Q ss_pred CCHHHHHHHCCCEEECCHHHHH-HHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 1056788607955405843898-840123444432002346666741896478399762012331012224721000001 Q gi|254780758|r 67 GAAQLKEDLSLTIIGPHKDDAA-MMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVN 145 (216) Q Consensus 67 g~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~ 145 (216) |+..+.+. .++........ .............. .........+.+++. .+++..++++.+||||++|+++++ T Consensus 89 g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gHt~~~~~~~~ 161 (221) T 1ztc_A 89 NSVLFENA---TFYVHEVYKTKNYLSFGTIVGRIYSK---VISSWKNVVLLKGEE-SLFDEKVKVFHTPWHAREHLSFLL 161 (221) T ss_dssp GGGGCTTC---EEEEEGGGGGSCGGGGCHHHHHHHHH---HHHTCCSEEEECSCC-EETTTTEEEEECCSSSTTCEEEEE T ss_pred CHHHCCCC---CEEEEECHHHHHCCCCCCCCCCCCCC---CCCCCCEEEEECCCE-EEECEEEEECCCCCCCHHHEEEEE T ss_conf 41210465---05541000222101222211001223---455542289706843-760205772478998834776899 Q ss_pred CCC---CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 234---32111100000135663467989999999999998519997899848879888 Q gi|254780758|r 146 FEN---NFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNST 201 (216) Q Consensus 146 ~~~---~~lftGD~lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216) +.+ ++||+||+++.........+..+...+.++| +++..+ + .++||||++-. T Consensus 162 ~~~~~~~iLf~GD~~~~~~~~~~~~~~~~~~~~~~~l-~~i~~~--d-~ivpgH~~p~~ 216 (221) T 1ztc_A 162 DTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFL-DRVGRI--D-LLVFPHDAPLK 216 (221) T ss_dssp EETTTEEEEECGGGSCSHHHHHHHHHTCSCHHHHHHH-HHHCCC--S-EEECSSSCCBC T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCC--C-EEEECCCCCCC T ss_conf 5589963999756789876774579987899999999-876449--9-99919897655 No 35 >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Probab=99.92 E-value=6e-26 Score=169.28 Aligned_cols=184 Identities=19% Similarity=0.273 Sum_probs=112.2 Q ss_pred CCCEEEEEECCCCEEEEECCCCC------HHHHHHHHHHCCCC---EEEEEECCCCCCCCCCCHHHHHH-HCCCEEECCH Q ss_conf 57169999889984999838999------99999999974997---52999869885210110567886-0795540584 Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFH---VKQIWITHGHVDHVGGAAQLKED-LSLTIIGPHK 84 (216) Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~------~~~i~~~l~~~~~~---i~~Ii~TH~H~DH~gg~~~l~~~-~~~~i~~~~~ 84 (216) ..|||+|.++ ++.+|||+|.. ...+.+.|++.|++ |++|++||.|.||+||+..+.+. ++...+..+. T Consensus 96 ~~n~~LI~~g--~~~iLIDtG~g~~~~~~~~~l~~~L~~~Gi~p~dId~VvlTH~H~DHiGGl~~~~~~~fp~a~~~~~~ 173 (331) T 1p9e_A 96 SVTGYLVNTG--SKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQ 173 (331) T ss_dssp EEEEEEEECS--SCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESSTTCEEECBH T ss_pred EEEEEEEEEC--CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHCCHHHHHHHHCCCCEEECCH T ss_conf 1699999989--98899989998566611889999999849998999799959797010141335566407872343146 Q ss_pred HHHHHHCCHHHHHHHHH---------CCCCCCCC---CCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCC Q ss_conf 38988401234444320---------02346666---7418964783997620123310122247210000012--3432 Q gi|254780758|r 85 DDAAMMGKVDEQARLLS---------IRMNARNA---SSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF--ENNF 150 (216) Q Consensus 85 ~~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~--~~~~ 150 (216) .+...+........... ......+. .....+.+.+++. .+ ++++++|||||||++|++. ++++ T Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ei~-~G--i~vi~tpGHTpGh~~~~i~~~~~~~ 250 (331) T 1p9e_A 174 KEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLV-PG--IKALASHGHTPGHTTYVVESQGQKL 250 (331) T ss_dssp HHHHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEECS-TT--EEEEECTTSSTTCEEEEEEETTEEE T ss_pred HHHHHHHCCHHHHCCCCCHHCCHHHHHHHHCCCCCCCCEEEEECCCCEEC-CC--EEEEECCCCCCCCEEEEEECCCEEE T ss_conf 77998742200101542000011445444123200046378505740205-86--4898558999876799996199089 Q ss_pred CCCCCHHHHCC--CCCCCCC---CCCHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCHHH Q ss_conf 11110000013--5663467---989999999999998519--997899848879888899 Q gi|254780758|r 151 AHLGDTLFRSS--IGRTDIL---HGDYQQLINSINNKILPL--GDEISFVCGHGPNSTIGR 204 (216) Q Consensus 151 lftGD~lf~~~--~G~~d~~---~~d~~~~~~sl~~~l~~l--~~~~~v~PgHG~~tt~~~ 204 (216) +|+||+++... +.++++. +.|+.+..+|- ++++.. .++++|+|+|+|...+|+ T Consensus 251 lf~GD~i~~~~~~~~~p~~~~~~D~D~~~a~~tR-~~ll~~~a~~~~lv~~~H~p~p~~g~ 310 (331) T 1p9e_A 251 ALLGDLILVAAVQFDDPSVTTQLDSDSKSVAVER-KKAFADAAKGGYLIAASHLSFPGIGH 310 (331) T ss_dssp EECTTSCCCHHHHTTCTTCCBTTCSSHHHHHHHH-HHHHHHHHHHTCEEECTTSSTTCEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCCCCCEEE T ss_conf 9993734467533379986025776999999999-99999860499299997899982189 No 36 >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Probab=99.79 E-value=3e-19 Score=130.32 Aligned_cols=146 Identities=22% Similarity=0.298 Sum_probs=104.3 Q ss_pred EEEEEECCCCC---CCEEEEEECCCCEEEEECCCCC---HH-----HH---HHHHHHCCCCEEEEEECCCCCCCCCCCHH Q ss_conf 59999708765---7169999889984999838999---99-----99---99999749975299986988521011056 Q gi|254780758|r 5 SFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGD---LD-----II---KDVIQSRNFHVKQIWITHGHVDHVGGAAQ 70 (216) Q Consensus 5 ~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~---~~-----~i---~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~ 70 (216) +++++|+|..+ -|||++..++ +.+|||||.. .+ .+ ..+++++..++++|++||+|.||+|++++ T Consensus 16 ~i~i~pLGG~~EIG~n~~~~e~~~--~~iliD~G~~f~~~~~~gid~iiPd~~~l~~~~~~i~ai~lTHaH~DH~Galp~ 93 (562) T 3bk2_A 16 HVEIIPLGGMGEIGKNITVFRFRD--EIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPF 93 (562) T ss_dssp CEEEEEEESBSBSSCCEEEEEETT--EEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHH T ss_pred EEEEEECCCCCHHHHCEEEEEECC--EEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCCEEEEECCCCHHHHCCHHH T ss_conf 289996688890451679999999--599995899989756889758936968987376672599979985565377287 Q ss_pred HHHH-----HCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEC-CCCCCCCCCCCCCCCCCCC Q ss_conf 7886-----079554058438988401234444320023466667418964783997620-1233101222472100000 Q gi|254780758|r 71 LKED-----LSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT-HIFKVFHCPGHSPGHVIYV 144 (216) Q Consensus 71 l~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~-~~~~vi~tPGHt~g~~~~~ 144 (216) |... +.+|+|+++.+...+.....+. . . .........+..++.+.+|+ .+++++++.+|.||+++++ T Consensus 94 Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~----~--~-~~~~~~~~~i~~~~~~~~g~~f~v~~~~v~hsipga~~~~ 166 (562) T 3bk2_A 94 LLPMIFGKESPVPIYGARLTLGLLRGKLEEF----G--L-RPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVV 166 (562) T ss_dssp HHHHHHCSCCCSEEEEEHHHHHHHHHHHHHT----T--C-CSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEE T ss_pred HHHHHCCCCCCCCEECCHHHHHHHHHHHHHC----C--C-CCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEE T ss_conf 8875214568858887999999999999972----9--9-8555531473699659982118999885367777646999 Q ss_pred C--CCCCCCCCCCHHHH Q ss_conf 1--23432111100000 Q gi|254780758|r 145 N--FENNFAHLGDTLFR 159 (216) Q Consensus 145 ~--~~~~~lftGD~lf~ 159 (216) + ++.+++||||.-+. T Consensus 167 i~t~~g~IlyTGDfr~~ 183 (562) T 3bk2_A 167 IRTPIGTIVHTGDFKLD 183 (562) T ss_dssp EEETTEEEEECCSCCCC T ss_pred EEECCEEEEEEECCCCC T ss_conf 98299789998255577 No 37 >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Probab=99.73 E-value=5.6e-18 Score=122.99 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=97.9 Q ss_pred EEEEEECCCCC---CCEEEEEECCCCEEEEECCCCCHHH--------------HHHHHHHCCCCEEEEEECCCCCCCCCC Q ss_conf 59999708765---7169999889984999838999999--------------999999749975299986988521011 Q gi|254780758|r 5 SFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGDLDI--------------IKDVIQSRNFHVKQIWITHGHVDHVGG 67 (216) Q Consensus 5 ~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~~~~--------------i~~~l~~~~~~i~~Ii~TH~H~DH~gg 67 (216) .+++.++|+++ -|||++..++. .+|+|||..... -...+.+ ..++++|++||+|.||+|+ T Consensus 188 ~vrit~LGG~~EIGrs~~lv~~~~~--~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~-~~~idAVlITHaH~DHiG~ 264 (651) T 3af5_A 188 WIRITGLGGFREVGRSALLVQTDES--FVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLR-EGLLDAIIITHAHLDHCGM 264 (651) T ss_dssp CEEEEEEECSSSSSCCEEEEEESSC--EEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHH-TTCCCEEECSCSSHHHHTT T ss_pred CEEEEEECCCCCCCCCEEEEEECCC--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEECCCCHHHHCC T ss_conf 2799993688862466799996796--899989988565667311367767765212367-5655689978898788686 Q ss_pred CHHHHHH--HCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCC---------CCCEEEECCCCEEEEE-CCCCCCCCCCC Q ss_conf 0567886--0795540584389884012344443200234666---------6741896478399762-01233101222 Q gi|254780758|r 68 AAQLKED--LSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN---------ASSDRWLQDGDTLLLG-THIFKVFHCPG 135 (216) Q Consensus 68 ~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~gd~i~lg-~~~~~vi~tPG 135 (216) +++|.+. +.+|+|++......+................... ......++.++..+++ +.+++++.+ | T Consensus 265 LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~~~a-G 343 (651) T 3af5_A 265 LPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNA-G 343 (651) T ss_dssp HHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEEC-S T ss_pred HHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEECCC-C T ss_conf 889997378888776678999999999999999876116777789999999985419957998498079879986568-9 Q ss_pred CCCCCCCCCCC--C--CCCCCCCCHH Q ss_conf 47210000012--3--4321111000 Q gi|254780758|r 136 HSPGHVIYVNF--E--NNFAHLGDTL 157 (216) Q Consensus 136 Ht~g~~~~~~~--~--~~~lftGD~l 157 (216) |+.|+.++++. + .+++||||.= T Consensus 344 H~lGsa~~~i~i~~~~~~IvyTGDfk 369 (651) T 3af5_A 344 HILGSAIVHLHIGNGLHNIAITGDFK 369 (651) T ss_dssp SSTTCEEEEEEETTTTTCEEECCSCC T ss_pred CCCCCCEEEEEECCCCEEEEECCCCC T ss_conf 88703089999568866899777878 No 38 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Probab=99.72 E-value=4.6e-17 Score=117.63 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=105.5 Q ss_pred CCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCC-------------------------HHHHHHHHHHCCC-CEEEE Q ss_conf 773599997087657169999889984999838999-------------------------9999999997499-75299 Q gi|254780758|r 2 SKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGD-------------------------LDIIKDVIQSRNF-HVKQI 55 (216) Q Consensus 2 ~~~~~~~i~v~~~~~N~~li~~~~~~~~ilID~G~~-------------------------~~~i~~~l~~~~~-~i~~I 55 (216) +..+++.+.||.=+++|.+|... ++.+|||+|.. .+.++..|++.++ +|+++ T Consensus 4 ~~~~I~fldVGqG~adaili~~~--g~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~ID~v 81 (547) T 2bib_A 4 SGNKIHFINVQEGGSDAIILESN--GHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFI 81 (547) T ss_dssp SCEEEEEECBSSSBCCEEEEEET--TEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCBSCE T ss_pred CCCEEEEEECCCCCCEEEEEEEC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE T ss_conf 89999999889999889999999--9999998999865664322222222234554332126788998987598937999 Q ss_pred EECCCCCCCCCCCHHHHHHHCCC-EEECCHHHHHHHCCH------HHHHHHHHCCCCCCCCCC-EEEECCCCEEEEECCC Q ss_conf 98698852101105678860795-540584389884012------344443200234666674-1896478399762012 Q gi|254780758|r 56 WITHGHVDHVGGAAQLKEDLSLT-IIGPHKDDAAMMGKV------DEQARLLSIRMNARNASS-DRWLQDGDTLLLGTHI 127 (216) Q Consensus 56 i~TH~H~DH~gg~~~l~~~~~~~-i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~l~~gd~i~lg~~~ 127 (216) |+||.|.||++|++.|.+.++.. ++++........... ........... ...... ......+..+.+++.. T Consensus 82 IiTH~H~DHigGl~~ll~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (547) T 2bib_A 82 LVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTAT-ETGVSVIQNITQGDAHFQFGDMD 160 (547) T ss_dssp ECCCSCHHHHTTHHHHHHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHH-HTTCEEECSCCTTTTEEEETTEE T ss_pred EECCCCHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCEEEECCEE T ss_conf 99999605769799999658787899799752222100123444799999999998-74997422125798179708816 Q ss_pred CCCCC-------------CCCCCCCCCCCCC--CCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 33101-------------2224721000001--23432111100000135663467989999999999998519997899 Q gi|254780758|r 128 FKVFH-------------CPGHSPGHVIYVN--FENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISF 192 (216) Q Consensus 128 ~~vi~-------------tPGHt~g~~~~~~--~~~~~lftGD~lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v 192 (216) ++++. +++|...|+++.+ .+.++||+||+=- .....++.. -..++.+++. T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~N~~Sivl~i~~~g~~~LftGD~~~-----------~~e~~ll~~----~~~~~~DvLk 225 (547) T 2bib_A 161 IQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDN-----------VHGAEDKYG----PLIGKVDLMK 225 (547) T ss_dssp EEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETTEEEEECTTCCS-----------TTSHHHHHH----HHHCCCSEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCH-----------HHHHHHHHC----CCCCCEEEEE T ss_conf 9993675455443334457898877689999999999999978980-----------567998646----8888546999 Q ss_pred EE-CCCCCC--CHHHHHHHCH Q ss_conf 84-887988--8899988281 Q gi|254780758|r 193 VC-GHGPNS--TIGRERRLNP 210 (216) Q Consensus 193 ~P-gHG~~t--t~~~e~~~n~ 210 (216) +| -||..+ |-..-++.+| T Consensus 226 v~~HHGS~~s~s~~fl~~v~P 246 (547) T 2bib_A 226 FNHHHDTNKSNTKDFIKNLSP 246 (547) T ss_dssp CTTTTBCSSSSCHHHHHHHCC T ss_pred CCCCCCCCCCCCHHHHHHCCC T ss_conf 689889886767989975499 No 39 >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Probab=99.72 E-value=3.5e-18 Score=124.19 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=96.2 Q ss_pred CEEEEEECCCCC---CCEEEEEECCCCEEEEECCCCCHH----HHHHHHHHCC-CCEEEEEECCCCCCCCCCCHHHHHHH Q ss_conf 359999708765---716999988998499983899999----9999999749-97529998698852101105678860 Q gi|254780758|r 4 LSFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRN-FHVKQIWITHGHVDHVGGAAQLKEDL 75 (216) Q Consensus 4 ~~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~~~----~i~~~l~~~~-~~i~~Ii~TH~H~DH~gg~~~l~~~~ 75 (216) -++++.++|..+ -|||++..+ +..+|||||.... .....+.... .+|++|++||+|.||+||+++|.++. T Consensus 10 ~~~~i~~LGG~~eiG~sc~lv~~~--~~~illDcG~~~~~~~~~~~p~~~~~~~~~idai~lTH~H~DH~g~Lp~l~~~~ 87 (459) T 2i7t_A 10 DQLLIRPLGAGQEVGRSCIILEFK--GRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKT 87 (459) T ss_dssp EEEEEEEEESSSSSSSCEEEEEET--TEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHS T ss_pred CEEEEEECCCCCCCCCCEEEEEEC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCHHHHHHHC T ss_conf 849999826898645689999989--929999588998865200267766678222999998978588769279999864 Q ss_pred --CCCEEECCHHHHHHHCCHHHHHHHHHCCCCC---------CCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf --7955405843898840123444432002346---------66674189647839976201233101222472100000 Q gi|254780758|r 76 --SLTIIGPHKDDAAMMGKVDEQARLLSIRMNA---------RNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYV 144 (216) Q Consensus 76 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~ 144 (216) +.++|+++....................... ........+..++....++..++++++ ||++|++++. T Consensus 88 ~~~~piy~t~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~a-gH~~g~~~~~ 166 (459) T 2i7t_A 88 SFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHA-GHVLGAAMFM 166 (459) T ss_dssp SCCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEEC-CSSTTCEEEE T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEEEC-CCCCCCEEEE T ss_conf 899988831527999998889877541034323567799999776245870799568608759999844-7767857999 Q ss_pred C--CCCCCCCCCCH Q ss_conf 1--23432111100 Q gi|254780758|r 145 N--FENNFAHLGDT 156 (216) Q Consensus 145 ~--~~~~~lftGD~ 156 (216) + ++.++++|||. T Consensus 167 i~~~~~~i~ytGD~ 180 (459) T 2i7t_A 167 IEIAGVKLLYTGDF 180 (459) T ss_dssp EEETTEEEEECCSC T ss_pred EEECCEEEEECCCC T ss_conf 99899988855886 No 40 >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Probab=99.69 E-value=4.4e-18 Score=123.55 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=95.7 Q ss_pred EEEEEECCCCC---CCEEEEEECCCCEEEEECCCCCHHH---H-HHH-HHH-CC-CCEEEEEECCCCCCCCCCCHHHHHH Q ss_conf 59999708765---7169999889984999838999999---9-999-997-49-9752999869885210110567886 Q gi|254780758|r 5 SFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGDLDI---I-KDV-IQS-RN-FHVKQIWITHGHVDHVGGAAQLKED 74 (216) Q Consensus 5 ~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~~~~---i-~~~-l~~-~~-~~i~~Ii~TH~H~DH~gg~~~l~~~ 74 (216) .+++.++|+++ -|||++..++ ..+|+|||..... . ... +-. .. .++++|++||+|.||+|++++|.+. T Consensus 183 ~irit~LGG~~EIGrsc~lv~~~~--~~ILlDcG~~~~~~~~~~~~~~~p~~~~l~~iDAV~LTHaH~DH~G~Lp~L~k~ 260 (640) T 2xr1_A 183 WVRVTALGGCKEVGRSCFLLSTPE--SRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY 260 (640) T ss_dssp CCEEEEEECSSSSBCCEEEEECSS--CEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHT T ss_pred EEEEEEECCCCCCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHCCHHHHHHC T ss_conf 089999478886152779999689--699998888878523357443557768730188999888976763865999852 Q ss_pred -HCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCC---------CCCEEEECCCCEEEEE-CCCCCCCCCCCCCCCCCCC Q ss_conf -0795540584389884012344443200234666---------6741896478399762-0123310122247210000 Q gi|254780758|r 75 -LSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN---------ASSDRWLQDGDTLLLG-THIFKVFHCPGHSPGHVIY 143 (216) Q Consensus 75 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~gd~i~lg-~~~~~vi~tPGHt~g~~~~ 143 (216) +.+|+|++......+..................+ ....+.+..++.+.++ +.+++++.+ ||++|+.+. T Consensus 261 g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~l~y~e~~~i~~di~Vt~~~a-GHslGsA~~ 339 (640) T 2xr1_A 261 GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNA-GHILGSAIS 339 (640) T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEEC-SSSTTCEEE T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCEEEEEEC-CCCCCCCCE T ss_conf 8998899777999999999999998766423468878899998885068558997699579717999726-877865005 Q ss_pred C--C--CCCCCCCCCCHHH Q ss_conf 0--1--2343211110000 Q gi|254780758|r 144 V--N--FENNFAHLGDTLF 158 (216) Q Consensus 144 ~--~--~~~~~lftGD~lf 158 (216) + + ...+++||||.-+ T Consensus 340 ~~~I~~g~~~IvyTGDfr~ 358 (640) T 2xr1_A 340 HFHIGDGLHNVVFTGDYKY 358 (640) T ss_dssp EEEETTTTEEEEECCSCCS T ss_pred EEEEEECCEEEEECCCCCC T ss_conf 7899508826997378566 No 41 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Probab=99.65 E-value=2.2e-16 Score=113.72 Aligned_cols=139 Identities=13% Similarity=0.242 Sum_probs=90.0 Q ss_pred CCCCEEEEEECCCCEEEEECCCCCH--------HHHHHHH-----------------------HHCCCCEEEEEECCCCC Q ss_conf 6571699998899849998389999--------9999999-----------------------97499752999869885 Q gi|254780758|r 14 FKQNCTFLFDEESLEAVVVDPGGDL--------DIIKDVI-----------------------QSRNFHVKQIWITHGHV 62 (216) Q Consensus 14 ~~~N~~li~~~~~~~~ilID~G~~~--------~~i~~~l-----------------------~~~~~~i~~Ii~TH~H~ 62 (216) .+.||++|..++ ..+|+|+|... +.+.+.. .+...++++|++||+|. T Consensus 18 iGg~~~~i~~~~--~~illD~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~ai~iTH~H~ 95 (429) T 2az4_A 18 IGGTVIEVAYKD--AHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHL 95 (429) T ss_dssp SSCCEEEEEETT--EEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCSEEEEECSCSCH T ss_pred CCCCEEEEEECC--EEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHH T ss_conf 588389999999--089994799977655675411000111234665433335542111001224656665899898717 Q ss_pred CCCCCCHHHHHHHCCCEEECCHHHHHHHCCHHHHH-HHHHCCCC-CCCCCCEEEECCCCEEEEECCCCCCCCCCCC-CCC Q ss_conf 21011056788607955405843898840123444-43200234-6666741896478399762012331012224-721 Q gi|254780758|r 63 DHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQA-RLLSIRMN-ARNASSDRWLQDGDTLLLGTHIFKVFHCPGH-SPG 139 (216) Q Consensus 63 DH~gg~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGH-t~g 139 (216) ||+|+++.+.. ..++|++......+ ....... ........ .........++.++.+.+|+.+++++++ +| .|| T Consensus 96 DH~g~l~~l~~--~~piy~~~~t~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~-~Hsi~g 171 (429) T 2az4_A 96 DHSRMINYLDP--AVPLYTLKETKMIL-NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPV-DHDAYG 171 (429) T ss_dssp HHHTTGGGBCT--TSCEEEEHHHHHHH-HHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEETTEEEEEEEC-CCSSTT T ss_pred HHHCCHHHHHH--CCCEEECHHHHHHH-HHHHHHHCCCCCCHHHHCCCCCEEEEECCCCEEEECCEEEEEEEC-CCCCCC T ss_conf 26585256761--69765279999999-998764000123402221554315995899969977779999856-678887 Q ss_pred CCCCCC--CCCCCCCCCCHHH Q ss_conf 000001--2343211110000 Q gi|254780758|r 140 HVIYVN--FENNFAHLGDTLF 158 (216) Q Consensus 140 ~~~~~~--~~~~~lftGD~lf 158 (216) +++|.+ ++.+++||||.-| T Consensus 172 s~~~~i~~~~~~i~ytGD~~~ 192 (429) T 2az4_A 172 ASALLIRTPDHFITYTGDLRL 192 (429) T ss_dssp CEEEEEEETTEEEEECCSCCS T ss_pred CEEEEEECCCCEEEECCCEEE T ss_conf 548998246745885465131 No 42 >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Probab=99.64 E-value=8.4e-16 Score=110.33 Aligned_cols=142 Identities=8% Similarity=0.038 Sum_probs=91.1 Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHH------HCCCEE Q ss_conf 876571699998899849998389999-----999999997499752999869885210110567886------079554 Q gi|254780758|r 12 TPFKQNCTFLFDEESLEAVVVDPGGDL-----DIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKED------LSLTII 80 (216) Q Consensus 12 ~~~~~N~~li~~~~~~~~ilID~G~~~-----~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~------~~~~i~ 80 (216) |.=...||++.-++ ..+|+|||++. +..++.+++.--.|++||+||+|.||+|++++|... +.++|| T Consensus 11 g~~~~~c~lL~~d~--~~ILlDcG~~~~~~~~~~~~~~~~~~~~~IDaVllSHah~DH~GaLP~L~~~~~~~~g~~~pIY 88 (717) T 2i7x_A 11 GSGTTVGSVVRFDN--VTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVY 88 (717) T ss_dssp SSSSCCCEEEEETT--EEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEE T ss_pred CCCCCEEEEEEECC--EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCCCCCCCCEE T ss_conf 99730389999899--7999989988776774450022112656587899778986775466899985132369888899 Q ss_pred ECCHHHHHHHCCHHHHHHHHHCCC--CCCC---------CCCEEEECCCCEEEEE----CCCCCCCCCCCCCCCCCCCCC Q ss_conf 058438988401234444320023--4666---------6741896478399762----012331012224721000001 Q gi|254780758|r 81 GPHKDDAAMMGKVDEQARLLSIRM--NARN---------ASSDRWLQDGDTLLLG----THIFKVFHCPGHSPGHVIYVN 145 (216) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~~~l~~gd~i~lg----~~~~~vi~tPGHt~g~~~~~~ 145 (216) +..+......-............. .... +.....++.++.+.+. +++++++.+ ||+.|++++.+ T Consensus 89 aT~pt~~L~~~~l~D~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~l~Y~q~~~l~~~~~gl~it~~~A-GH~LGsa~~~I 167 (717) T 2i7x_A 89 ATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNA-GVCPGGSIWCI 167 (717) T ss_dssp EEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEEC-SSSTTCEEEEE T ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEECCCCCCCEEEEEEEC-CCCCCCEEEEE T ss_conf 66899999999999999975311655566789999999985048947998598037888579999655-63234269999 Q ss_pred --CCCCCCCCCCH Q ss_conf --23432111100 Q gi|254780758|r 146 --FENNFAHLGDT 156 (216) Q Consensus 146 --~~~~~lftGD~ 156 (216) ...+++||||. T Consensus 168 ~~~~~~IvytgD~ 180 (717) T 2i7x_A 168 STYSEKLVYAKRW 180 (717) T ss_dssp ECSSCEEEECSSC T ss_pred EECCEEEEEECCC T ss_conf 8299599996367 No 43 >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Probab=99.57 E-value=1.6e-14 Score=102.87 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=50.3 Q ss_pred CCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHHHHHHCC-CEEE Q ss_conf 71699998899849998389999999999997499---752999869885210110567886079-5540 Q gi|254780758|r 16 QNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQLKEDLSL-TIIG 81 (216) Q Consensus 16 ~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l~~~~~~-~i~~ 81 (216) -|||||..++ ..+|||||... .+++.+++.|+ +|++|++||.|.||+||++.+.++++. +++. T Consensus 33 G~S~LIe~~~--~~iLID~G~~~-~~~~~l~~~gi~~~~Id~I~iTH~H~DHigGL~~ll~~~~~~~~~~ 99 (284) T 2p4z_A 33 GLSLLLKKGN--KEIVVDTGQSE-NFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYT 99 (284) T ss_dssp SCEEEEEETT--EEEEECCCSST-HHHHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHCTTCEEEE T ss_pred EEEEEEEECC--EEEEEECCCCH-HHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCHHHHHHCCCCCCCC T ss_conf 7899999899--68999079997-9999999849997899899974643543177667886455665444 No 44 >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Probab=99.50 E-value=5.6e-14 Score=99.74 Aligned_cols=138 Identities=15% Similarity=0.175 Sum_probs=87.6 Q ss_pred CCEEEEEECC-CC-----CCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CC-CEEEEEECCCCCCCCCCCHHHHHH Q ss_conf 7359999708-76-----5716999988998499983899999999999974-99-752999869885210110567886 Q gi|254780758|r 3 KLSFHIVQVT-PF-----KQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSR-NF-HVKQIWITHGHVDHVGGAAQLKED 74 (216) Q Consensus 3 ~~~~~~i~v~-~~-----~~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~-~~-~i~~Ii~TH~H~DH~gg~~~l~~~ 74 (216) .|++.++=.+ +| .++||+|..+ +..+|||||.+. ...+++. +. +|++|++||.|.||++|++.|... T Consensus 24 ~m~~~~lG~~~~~~~~~~~~S~~Li~~~--~~~iLiD~G~g~---~~~l~~~~~~~~id~I~iTH~H~DH~~gl~~l~~~ 98 (268) T 1zkp_A 24 AMKMTVVGFWGGFPEAGEATSGYLFEHD--GFRLLVDCGSGV---LAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYA 98 (268) T ss_dssp CEEEEEEECBSSSCCTTCCBSEEEEEET--TEEEEECCCTTH---HHHHTTTCCGGGCCEEECSCCCHHHHTTHHHHHHH T ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEC--CCEEEEECCHHH---HHHHHHCCCHHHCCEEEEECCCHHHHCCHHHHHHH T ss_conf 7789999248995999996467999999--928999597679---99998549852497999927960333344888765 Q ss_pred H-----------CCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 0-----------79554058438988401234444320023466667418964783997620123310122247210000 Q gi|254780758|r 75 L-----------SLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIY 143 (216) Q Consensus 75 ~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~ 143 (216) . ..++++.......+. . ...........+.++..+++|+.+++.+.+ +|..++++| T Consensus 99 ~~~~~~~~~~~~~l~i~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~ig~~~v~~~~~-~H~~~~~g~ 165 (268) T 1zkp_A 99 RLITSATKGQLPELPIYGHTFDENGFH-S-----------LTHEPHTKGIPYNPEETLQIGPFSISFLKT-VHPVTCFAM 165 (268) T ss_dssp HHHHHHHHCCCCCEEEEECSSSHHHHH-T-----------TCBTTTEEEEECCTTSCEEETTEEEEEEEC-CSSSCCEEE T ss_pred HHHCCCCCCCCCCEEEEECHHHHHHHH-H-----------HHHHCCCCEEECCCCCEEEEEEEEEEEECC-CCCCCCCEE T ss_conf 420233335677445883366788998-7-----------654225533770687559841289974037-777874134 Q ss_pred CCC--CCCCCCCCCHHH Q ss_conf 012--343211110000 Q gi|254780758|r 144 VNF--ENNFAHLGDTLF 158 (216) Q Consensus 144 ~~~--~~~~lftGD~lf 158 (216) .+. +.+++|+||+-+ T Consensus 166 ~i~~~~~~i~ysgDt~~ 182 (268) T 1zkp_A 166 RITAGNDIVVYSADSSY 182 (268) T ss_dssp EEEETTEEEEECCSCCC T ss_pred EEECCCCEEEECCCCCC T ss_conf 77427977998888998 No 45 >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} Probab=99.38 E-value=4.7e-13 Score=94.38 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=77.2 Q ss_pred CEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCHHHHHHH--CCCEEECCHHHHHHHCCH Q ss_conf 1699998899849998389999999999997499-7529998698852101105678860--795540584389884012 Q gi|254780758|r 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNF-HVKQIWITHGHVDHVGGAAQLKEDL--SLTIIGPHKDDAAMMGKV 93 (216) Q Consensus 17 N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~-~i~~Ii~TH~H~DH~gg~~~l~~~~--~~~i~~~~~~~~~~~~~~ 93 (216) .|++|..+ +..+|||||.... ..+.+. ++++|++||.|.||++|+..++... +.++|++..... . T Consensus 40 ss~li~~~--~~~iLiD~G~~~~-----~~~~~~~~id~I~iTH~H~DH~~GL~~l~~~~~~~i~iy~~~~~~~-----~ 107 (258) T 3g1p_A 40 CSGVVKFN--DAITLIDAGLHDL-----ADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQG-----C 107 (258) T ss_dssp SEEEEEET--TEEEEECCCCTTH-----HHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSC-----S T ss_pred EEEEEEEC--CEEEEEECCHHHH-----HHCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEECCCCCC-----H T ss_conf 49999989--9789998999999-----8668985887999816741024462455442257853895441120-----2 Q ss_pred HHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCHH Q ss_conf 34444320023466667418964783997620123310122247210000012--34321111000 Q gi|254780758|r 94 DEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF--ENNFAHLGDTL 157 (216) Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~--~~~~lftGD~l 157 (216) ..... ..........+++++.+.+++.+++.+++ .|++.+++|.+. +.+++|+||+- T Consensus 108 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~g~~i~~~~~~i~y~gDt~ 166 (258) T 3g1p_A 108 DDLFK------HPGLLDFSHTVEPFVVFDLQGLQVTPLPL-NHSKLTFGYLLETAHSRVAWLSDTA 166 (258) T ss_dssp TTTTT------SCTTEEEEEECCTTCCEEETTEEEEEEEC-CSSSCCEEEEEECSSCEEEEECSCS T ss_pred HHHHC------CCCCCCCCCCCCCCEEEECCCEEEECCCC-CCCCCCEEEEEECCCEEEEECCCCC T ss_conf 24422------56654321235663688505244131324-7898754999962982699848678 No 46 >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Probab=99.19 E-value=5.8e-11 Score=82.23 Aligned_cols=71 Identities=11% Similarity=0.263 Sum_probs=50.0 Q ss_pred CCEEEEEECCCCEEEEECCCCCHHHHHHHHHHC-------CC---CEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHH Q ss_conf 716999988998499983899999999999974-------99---75299986988521011056788607955405843 Q gi|254780758|r 16 QNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSR-------NF---HVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKD 85 (216) Q Consensus 16 ~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~-------~~---~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~ 85 (216) +++.+++..+++..+|||||.+.. .++.+. ++ +|++|++||.|.||+.|++.|.+..+..+|+.... T Consensus 40 ~~ssi~l~~~g~~~iLiD~G~~~~---~ql~~~~~~~~~~~i~~~~Id~I~lTH~H~DH~~GL~~L~~~~~~~v~~~~~~ 116 (321) T 3jxp_A 40 TQSSIALSDDGVHWILCNASPDIR---AQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTDMV 116 (321) T ss_dssp CBCEEEEESSSSSEEEECCCTTHH---HHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGGCCEEEEECHHH T ss_pred EEEEEEEEECCCEEEEEECCCCHH---HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCEEEEEECHHH T ss_conf 324799997998599997997599---99999765483334678875589970776124767999961220237606667 Q ss_pred HHHH Q ss_conf 8988 Q gi|254780758|r 86 DAAM 89 (216) Q Consensus 86 ~~~~ 89 (216) ...+ T Consensus 117 ~~~~ 120 (321) T 3jxp_A 117 HQDL 120 (321) T ss_dssp HHHT T ss_pred HHHH T ss_conf 4444 No 47 >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Probab=99.14 E-value=2.4e-10 Score=78.69 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=55.2 Q ss_pred CCEEEEEECC-CC----C-CCEEEEEE--CCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHH Q ss_conf 7359999708-76----5-71699998--899849998389999999999997499---752999869885210110567 Q gi|254780758|r 3 KLSFHIVQVT-PF----K-QNCTFLFD--EESLEAVVVDPGGDLDIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQL 71 (216) Q Consensus 3 ~~~~~~i~v~-~~----~-~N~~li~~--~~~~~~ilID~G~~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l 71 (216) +|++.++=.| ++ + +.|++|.. ..++..+|||||.+. ...+.+.++ ++++|++||.|+||++|++.| T Consensus 1 ~M~l~~LGtg~~~p~~~r~~s~~lv~~~~~~~~~~iL~DcG~g~---~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l 77 (306) T 2cbn_A 1 AMNLIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT---QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGL 77 (306) T ss_dssp CCEEEEEECBSSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTH---HHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHH T ss_pred CCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCHHH---HHHHHHHCCCHHHCCEEEEECCCHHHCCCCCHH T ss_conf 92899977689989999964889999726889948999997589---999998189966775899834668980784013 Q ss_pred HHH-------HCCCEEECCHHHHHH Q ss_conf 886-------079554058438988 Q gi|254780758|r 72 KED-------LSLTIIGPHKDDAAM 89 (216) Q Consensus 72 ~~~-------~~~~i~~~~~~~~~~ 89 (216) ... -+..+|++......+ T Consensus 78 l~~~~~~~~~~~l~i~gP~~~~~~l 102 (306) T 2cbn_A 78 LCSRSMSGIIQPLTIYGPQGIREFV 102 (306) T ss_dssp HHHHHHTTCCSCEEEEESTTHHHHH T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHH T ss_conf 3101203789876566867789999 No 48 >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Probab=99.10 E-value=1.9e-10 Score=79.25 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=45.7 Q ss_pred CCEEEEEECCCCCCC------EEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCHHHHHH Q ss_conf 735999970876571------6999988998499983899999999999974997-52999869885210110567886 Q gi|254780758|r 3 KLSFHIVQVTPFKQN------CTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFH-VKQIWITHGHVDHVGGAAQLKED 74 (216) Q Consensus 3 ~~~~~~i~v~~~~~N------~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~-i~~Ii~TH~H~DH~gg~~~l~~~ 74 (216) .|+++++.-..-+.. ..+++ + .+|+|||.+. .+++.+++.|++ +++|++||.|.||++|+..|.++ T Consensus 12 ~m~i~~l~~~~~~~~~~~e~G~s~~i--e---~iL~D~G~~~-~~~~n~~~lgId~~daV~lTH~H~DH~gGl~~L~~~ 84 (267) T 3h3e_A 12 HMRIHVLCDDSSQNGFESEHGFSVLV--D---SVLFDTGKSD-VFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGK 84 (267) T ss_dssp CEEEEEEECSCCCTTCCCCSSCEEEE--T---TEEECCCSSS-HHHHHHHHTTCCCCSEEECSCSCHHHHGGGGGCCSC T ss_pred CEEEEEEECCCCCCCCCCCCEEEEEE--C---CEEEECCCCH-HHHHHHHHCCCCHHHCEEEECCCHHHCCCHHHHHHH T ss_conf 27999997799998751462255444--5---2899799997-999999984998468489814553110788999876 No 49 >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Probab=99.00 E-value=1.7e-09 Score=73.69 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=52.3 Q ss_pred CEEEEEECC-CC-----CCCEEEEE-ECCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHHHH Q ss_conf 359999708-76-----57169999-8899849998389999999999997499---75299986988521011056788 Q gi|254780758|r 4 LSFHIVQVT-PF-----KQNCTFLF-DEESLEAVVVDPGGDLDIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQLKE 73 (216) Q Consensus 4 ~~~~~i~v~-~~-----~~N~~li~-~~~~~~~ilID~G~~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l~~ 73 (216) |++.++=.| ++ .+.|+++. .+.+++.+|||||.+.- ..+.+.++ ++++|++||.|+||++|++.+.. T Consensus 1 Mkv~~LGtg~~~p~~~r~~s~~~v~~~~~~~~~iLiD~G~g~~---~~l~~~~~~~~~i~~I~iTH~H~DH~~Gl~~~~~ 77 (320) T 1y44_A 1 MELLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQ---HQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLG 77 (320) T ss_dssp CEEEEEECBSSSCCSSCCBCEEEEEETTTTSEEEEECCCTTHH---HHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHH T ss_pred CEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEECCHHHH---HHHHHCCCCHHHCCEEEECCCCHHHCCCCHHHHH T ss_conf 9899997789979999976889999980699489994977999---9999839996676689972445665167135555 Q ss_pred HH-------CCCEEECCHHHHHH Q ss_conf 60-------79554058438988 Q gi|254780758|r 74 DL-------SLTIIGPHKDDAAM 89 (216) Q Consensus 74 ~~-------~~~i~~~~~~~~~~ 89 (216) .. +.++|++......+ T Consensus 78 ~~~~~~~~~~~~iy~p~~~~~~~ 100 (320) T 1y44_A 78 SRSFQGGEDELTVYGPKGIKAFI 100 (320) T ss_dssp HHHHTTCCSCEEEEESTTHHHHH T ss_pred HHHHCCCCCCCCCCCCHHHHHHH T ss_conf 55531677654234770178899 No 50 >3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Probab=98.87 E-value=1.3e-09 Score=74.30 Aligned_cols=159 Identities=21% Similarity=0.172 Sum_probs=79.4 Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCHH-HHHHHCCCEEECCHHHHH Q ss_conf 0876571699998899849998389999999999997499-75299986988521011056-788607955405843898 Q gi|254780758|r 11 VTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNF-HVKQIWITHGHVDHVGGAAQ-LKEDLSLTIIGPHKDDAA 88 (216) Q Consensus 11 v~~~~~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~-~i~~Ii~TH~H~DH~gg~~~-l~~~~~~~i~~~~~~~~~ 88 (216) +..++..|++|..+ +..+||||-..... ...+ ++++|++||.|.||++.... ..++..++++.. ..... T Consensus 32 It~lGhas~lie~~--g~~ILiDP~~~~~~------~~~~p~iD~VLiTH~H~DH~~~~~l~~~~~~~~~vi~~-~~~~~ 102 (235) T 3kl7_A 32 ITFIKHGSLMLTYD--NHSIQVDPVSEYAD------YTTFPKADIILITHEHGDHLDPKAIQAVEKSDTEIIAN-ENSQK 102 (235) T ss_dssp EEEEETTEEEEEET--TEEEEESCCTTTCC------TTSSCCCSEEEECCSSTTTCCHHHHHHHCCTTCEEEEC-HHHHH T ss_pred EEEEECCEEEEEEC--CEEEEECCCCCCCC------HHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCEEEEC-HHHHH T ss_conf 99983159999989--99999889999886------20089888999799870126722012464269669815-89987 Q ss_pred HHCCHHHHHHHHHCCCCCCCCCCEEEECC-CCEEEEECCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 84012344443200234666674189647-8399762012331012-----------22472100000123432111100 Q gi|254780758|r 89 MMGKVDEQARLLSIRMNARNASSDRWLQD-GDTLLLGTHIFKVFHC-----------PGHSPGHVIYVNFENNFAHLGDT 156 (216) Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-gd~i~lg~~~~~vi~t-----------PGHt~g~~~~~~~~~~~lftGD~ 156 (216) .+.... .+.. +....+++.+++.+++ |++.+.+..+..++.+++|+||+ T Consensus 103 ~l~~~~-------------------~~~~~~~~~~~~~~~I~~~p~~h~~~~~~~~~~~~~~~gyvie~~g~~i~~~GDt 163 (235) T 3kl7_A 103 KLGKGK-------------------VLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDT 163 (235) T ss_dssp HHTCSE-------------------ECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSC T ss_pred HHHHCC-------------------CCCCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECCC T ss_conf 751064-------------------2025773277557206789734157876676787533778999799799994586 Q ss_pred HHHC---CCCCCCC---CC-----CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH Q ss_conf 0001---3566346---79-----899999999999985199978998488798888 Q gi|254780758|r 157 LFRS---SIGRTDI---LH-----GDYQQLINSINNKILPLGDEISFVCGHGPNSTI 202 (216) Q Consensus 157 lf~~---~~G~~d~---~~-----~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~ 202 (216) -+.. .+++.|+ |- -++.+..+ ....+.+.. ++|.|=....+ T Consensus 164 ~~~~e~~~~~~iDv~~lpig~~~~m~~~~A~~----~~~~l~pk~-viP~H~~~~~~ 215 (235) T 3kl7_A 164 EDIPEMKDLKDIDIAFLPVNQPYTMTVSQAAK----AARMFSPKI-LYPYHYGDTKI 215 (235) T ss_dssp CSCGGGGGCCSCSEEEEECCTTTSCCHHHHHH----HHHHHCCSE-EEEESCTTCCT T ss_pred CCHHHHHHCCCCCEEEECCCCCCCCCHHHHHH----HHHHCCCCE-EEEECCCCCCH T ss_conf 77577751269879997679977579999999----999729999-99956899888 No 51 >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Probab=98.68 E-value=6.2e-08 Score=64.62 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=39.9 Q ss_pred CCEE-EEEEC---CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHH Q ss_conf 7169-99988---99849998389999999999997499752999869885210110567886 Q gi|254780758|r 16 QNCT-FLFDE---ESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKED 74 (216) Q Consensus 16 ~N~~-li~~~---~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~ 74 (216) .|+. +|... .++..+|||+|.+. ..+.++....++++|++||.|.||+.|+..|... T Consensus 62 ~~~S~li~~~~~~~~~~~iLiD~G~~~--~~~~~~~~~~~id~I~lTH~H~DH~~GL~~l~~~ 122 (293) T 3md7_A 62 RRASLLVERYDAEGNNTVVVIDTGPDF--RMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTY 122 (293) T ss_dssp CBCEEEEEEECTTCCEEEEEECCCTTH--HHHHHHHTCCCCSEEECSCCCHHHHTTGGGGHHH T ss_pred CCCEEEEEECCCCCCCEEEEEECCCCH--HHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH T ss_conf 334799985467899758999688137--9998642345677899844664445575454445 No 52 >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Probab=98.67 E-value=1.5e-08 Score=68.23 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=86.0 Q ss_pred CCCCCCEEEEEECCCCEEEEECCCC----C--------H-HHHHHHH---------HH-------CCC-CEEEEEECCCC Q ss_conf 8765716999988998499983899----9--------9-9999999---------97-------499-75299986988 Q gi|254780758|r 12 TPFKQNCTFLFDEESLEAVVVDPGG----D--------L-DIIKDVI---------QS-------RNF-HVKQIWITHGH 61 (216) Q Consensus 12 ~~~~~N~~li~~~~~~~~ilID~G~----~--------~-~~i~~~l---------~~-------~~~-~i~~Ii~TH~H 61 (216) ..++.++++|...+ +..++||+=. . . ....... +. ..+ ++++|++||.| T Consensus 65 ~WLGhag~~i~~~g-~t~iliDp~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~p~~R~~p~~idp~~L~~IDaVLITH~H 143 (379) T 3bv6_A 65 WWLGCTGIWLKSAG-NTNLSIDFWCGTGKKTQKNRLMNTQHQMMRMGGVEALQPNLRTSIFPLDPFAIKEIDAVLASHDH 143 (379) T ss_dssp EEEETTEEEEEETT-CCEEEESCCCCCCCCCSSCCBCCTTCHHHHHHCCCBCCCCCBCSCCCSCGGGCCCCSEEECSBCS T ss_pred EECCCCEEEEEECC-CCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCC T ss_conf 98024689999789-73899899578887665544456421011024544468754557898896897998889989997 Q ss_pred CCCCCC--CHHHHHHHC--CCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCC--- Q ss_conf 521011--056788607--9554058438988401234444320023466667418964783997620123310122--- Q gi|254780758|r 62 VDHVGG--AAQLKEDLS--LTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP--- 134 (216) Q Consensus 62 ~DH~gg--~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tP--- 134 (216) .||++. +..+.++.+ ++++++......+ .. .+ .+......+..|+++++++.+++++++- T Consensus 144 ~DHlD~~tl~~i~~~~~~~~~~igP~~~~~~l-~~-------~g-----vp~~~ii~l~~gd~~~i~~i~I~~~pa~H~~ 210 (379) T 3bv6_A 144 ADHIDVNVAAAVLQNCGEHVKFIGPQACVDLW-LG-------WG-----VPQERCIVAKVGDVLEIGDVKIRVLDSFDRT 210 (379) T ss_dssp GGGCCHHHHHHHHHHSCTTCEEEECHHHHHHH-HH-------HT-----CCGGGEEECCTTCEEEETTEEEEEEECCCHH T ss_pred CCCCCHHHHHHHHHCCCCCEEEECCHHHHHHH-HH-------CC-----CCHHHEEEECCCCEEEECCEEEEEEEEECCC T ss_conf 11179699999985079745998378999999-87-------59-----9667668814787289877799999435365 Q ss_pred -------CCCCC-----------CCCCCC--CCCCCCCCCCHHHHCC---CC---CCCC---C----------CCCHHHH Q ss_conf -------24721-----------000001--2343211110000013---56---6346---7----------9899999 Q gi|254780758|r 135 -------GHSPG-----------HVIYVN--FENNFAHLGDTLFRSS---IG---RTDI---L----------HGDYQQL 175 (216) Q Consensus 135 -------GHt~g-----------~~~~~~--~~~~~lftGD~lf~~~---~G---~~d~---~----------~~d~~~~ 175 (216) +|... .++|.+ ++.++.|+||+.+... +| +.|+ + .-++.+. T Consensus 211 ~~~~~p~~~~~~~~~~~~~~~~~~~gylIe~~g~~Iy~sGDT~~~~~~~~ig~~~~iDvall~iG~~~~~~~~hmt~~eA 290 (379) T 3bv6_A 211 ALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNYYAKHGNDYQIDVALLSYGENPRGVTDKMTSSDV 290 (379) T ss_dssp HHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCTTHHHHHHHSCCSEEEEEBCCCCTTCCCSBCHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHH T ss_conf 10014776444676666688765316889719938999679996478999886479989997888888777668899999 Q ss_pred HHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 999999985199978998488798 Q gi|254780758|r 176 INSINNKILPLGDEISFVCGHGPN 199 (216) Q Consensus 176 ~~sl~~~l~~l~~~~~v~PgHG~~ 199 (216) .+ ....+.+++ ++|-|=.. T Consensus 291 ~~----aa~~l~~k~-vIP~H~d~ 309 (379) T 3bv6_A 291 LR----AAESLDCQV-VVPFHHDI 309 (379) T ss_dssp HH----HHHHHTCSE-EEEESTTS T ss_pred HH----HHHHCCCCE-EEEECCCC T ss_conf 99----999709999-99966345 No 53 >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Probab=98.56 E-value=1.9e-07 Score=61.80 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=78.5 Q ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHHHH Q ss_conf 08765716999988998499983899999999999974997529998698852101105678860795540584389884 Q gi|254780758|r 11 VTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMM 90 (216) Q Consensus 11 v~~~~~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~ 90 (216) +..++.+|++|..+ +..+||||-.... .......++++|++||.|.||... .+.. T Consensus 15 It~lGhs~~lIe~~--g~~ILiDP~~~~~----~~~~~~~~~D~VliSH~H~DH~~~--~~~~----------------- 69 (220) T 1vjn_A 15 ITWFGHACFALEME--GKTIVTDPFDESV----GYPIPNVTADVVTESHQHFDHNAH--HLVK----------------- 69 (220) T ss_dssp EEEEETTEEEEEET--TEEEEESCCC---------CCCCCBCSEEECSSCC---CGG--GGCB----------------- T ss_pred EEEEECCEEEEEEC--CEEEEECCCCCCC----CCCCCCCCCCEEEECCCCCCCCCH--HHCC----------------- T ss_conf 99970319999989--9999989998877----898777878899966878676751--2314----------------- Q ss_pred CCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCC-------CCCCCCCC--CCCCCCCCCHHHHC- Q ss_conf 012344443200234666674189647839976201233101222472-------10000012--34321111000001- Q gi|254780758|r 91 GKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSP-------GHVIYVNF--ENNFAHLGDTLFRS- 160 (216) Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~-------g~~~~~~~--~~~~lftGD~lf~~- 160 (216) .....+..+...++++.+++.+++- |++ .++.|+++ +.+++|+||+-+.. T Consensus 70 -------------------~~~~v~~~~g~~~~~~~~I~~v~a~-H~~~~~~~~g~~~~~~ie~~g~~I~~~GDt~~~~~ 129 (220) T 1vjn_A 70 -------------------GNFRVIDRPGAYTVNGVKIKGVETF-HDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLT 129 (220) T ss_dssp -------------------SSCEEECSSEEEEETTEEEEEEEEE-EC-------CEEEEEEEEETTEEEEECTTCCSCCC T ss_pred -------------------CCEEEECCCCEEEECCEEECCCCCE-ECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC T ss_conf -------------------6269960456599798221243206-51888854787579999849929999689888989 Q ss_pred -----CCCCCCC---CCC-----CHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf -----3566346---798-----99999999999985199978998488 Q gi|254780758|r 161 -----SIGRTDI---LHG-----DYQQLINSINNKILPLGDEISFVCGH 196 (216) Q Consensus 161 -----~~G~~d~---~~~-----d~~~~~~sl~~~l~~l~~~~~v~PgH 196 (216) ..|++|+ |-| ++.+.. +....+.+.. |+|-| T Consensus 130 ~~~~~~~~~~Dva~lPigg~~~m~~~eA~----~~~~~l~pk~-vIP~H 173 (220) T 1vjn_A 130 PAQVEEIGEIDVLLVPVGGTYTIGPKEAK----EVADLLNAKV-IIPMH 173 (220) T ss_dssp HHHHHHHCCCSEEEEECCSSSSCCHHHHH----HHHHHTTCSE-EEEES T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHH----HHHHHHCCCE-EEEEE T ss_conf 99998528976899944996538999999----9999709999-99970 No 54 >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Probab=98.52 E-value=2.6e-07 Score=61.06 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=64.7 Q ss_pred CCCCCCEEEEEECCCCEEEEECCCC--------CH--HH---HHHHHHH----------------CCC-CEEEEEECCCC Q ss_conf 8765716999988998499983899--------99--99---9999997----------------499-75299986988 Q gi|254780758|r 12 TPFKQNCTFLFDEESLEAVVVDPGG--------DL--DI---IKDVIQS----------------RNF-HVKQIWITHGH 61 (216) Q Consensus 12 ~~~~~N~~li~~~~~~~~ilID~G~--------~~--~~---i~~~l~~----------------~~~-~i~~Ii~TH~H 61 (216) ..+++++++|... ++..+||||=. .. .. ....... ..+ +|++|++||.| T Consensus 41 ~WLG~s~~~i~~~-~g~~IliDP~ls~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~R~~p~~idp~~L~~IDaVLiTH~H 119 (360) T 2wyl_A 41 WWLGCTGIWLKSE-GGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDH 119 (360) T ss_dssp EEEETTEEEEECT-TCCEEEESCCCCCCCCCCCC----------------CCCCCCBCSCCCCCGGGCCCCSEEECSBSC T ss_pred EEECCCEEEEECC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCC T ss_conf 9945758999906-991999868878877766665555321111235543457755557898896888888899979996 Q ss_pred CCCCCCCHH--HHHHH--CCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCC---- Q ss_conf 521011056--78860--7955405843898840123444432002346666741896478399762012331012---- Q gi|254780758|r 62 VDHVGGAAQ--LKEDL--SLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC---- 133 (216) Q Consensus 62 ~DH~gg~~~--l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~t---- 133 (216) .||++.... +.+.. .++++++......+ ... + ........+..|+.+.+++.++.++.+ T Consensus 120 ~DHld~~~l~~~~~~~~~~~~~~gP~~~~~~l-~~~-------g-----~~~~~i~~~~~g~~~~v~~~~i~~~~~~~~~ 186 (360) T 2wyl_A 120 NDHIDVNVAAAVMQNCADDVPFIGPKTCVDLW-IGW-------G-----VPKERCIVVKPGDVVKVKDIEIHALDAFDRT 186 (360) T ss_dssp TTTCCHHHHHHHHHHSCTTCCEEECHHHHHHH-HHH-------T-----CCGGGEEECCTTCEEEETTEEEEEEECCCC- T ss_pred HHHCCCHHHHHHHHCCCCCCEEECCHHHHHHH-HHC-------C-----CCHHHEEEECCCCEEEEECCEEEEEEEEEEE T ss_conf 02178099999985476774386588999999-866-------9-----9655157605786577402135776314555 Q ss_pred -----C-CC----------CCCCCCCCC--CCCCCCCCCCHHHH Q ss_conf -----2-24----------721000001--23432111100000 Q gi|254780758|r 134 -----P-GH----------SPGHVIYVN--FENNFAHLGDTLFR 159 (216) Q Consensus 134 -----P-GH----------t~g~~~~~~--~~~~~lftGD~lf~ 159 (216) | .| ....+.|.+ ++.++.|+||+-+. T Consensus 187 ~~~~~p~~~~~~~~~~~~~~~~~~g~~ie~~g~tIy~sGDT~~~ 230 (360) T 2wyl_A 187 ALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYS 230 (360) T ss_dssp -----------------CCTTTBEEEEEEETTEEEEECTTCCCC T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC T ss_conf 56642664446665577787740489997199189992698866 No 55 >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Probab=98.43 E-value=7.4e-08 Score=64.18 Aligned_cols=51 Identities=24% Similarity=0.530 Sum_probs=36.4 Q ss_pred CEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH Q ss_conf 169999889984999838999999999999749975299986988521011056788 Q gi|254780758|r 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKE 73 (216) Q Consensus 17 N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l~~ 73 (216) +.|+.+ ++. .+|||||.+.. ..+.....++++|++||.|.||++|++.|.. T Consensus 12 ~t~~~~-~~~--~iLiD~G~g~~---~~l~~~~~~i~~IfiTH~H~DHi~gl~~l~~ 62 (280) T 2e7y_A 12 STWIYY-SPE--RILFDAGEGVS---TTLGSKVYAFKYVFLTHGHVDHIAGLWGVVN 62 (280) T ss_dssp EEEEEE-GGG--TEEEEECTTHH---HHHGGGGGGCCEEECSCCCHHHHTTHHHHHH T ss_pred EEEEEE-CCC--EEEEECCHHHH---HHHCCCCCCCCEEEEECCCHHHHCCHHHHHH T ss_conf 799998-998--79998974499---9855552238789991786356467999999 No 56 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=80.80 E-value=0.92 Score=22.97 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHH Q ss_conf 9999999998519997-8998488798888999882 Q gi|254780758|r 174 QLINSINNKILPLGDE-ISFVCGHGPNSTIGRERRL 208 (216) Q Consensus 174 ~~~~sl~~~l~~l~~~-~~v~PgHG~~tt~~~e~~~ 208 (216) .+.+.. +.|+..... +.++--||=.+.-+.||-. T Consensus 287 Tl~~aa-~~Lk~~GA~~V~~~~THgvfs~~A~~~l~ 321 (379) T 2ji4_A 287 SFLAAA-ETLKERGAYKIFVMATHGLLSSDAPRRIE 321 (379) T ss_dssp HHHHHH-HHHHHTTCCEEEEEEEEECCCTTHHHHHH T ss_pred HHHHHH-HHHHHCCCCEEEEEEECCCCCCHHHHHHH T ss_conf 699999-99997699837999979768816999997 No 57 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Probab=71.76 E-value=2.7 Score=20.25 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=17.4 Q ss_pred HHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHHHHC Q ss_conf 99999999851999-789984887988889998828 Q gi|254780758|r 175 LINSINNKILPLGD-EISFVCGHGPNSTIGRERRLN 209 (216) Q Consensus 175 ~~~sl~~~l~~l~~-~~~v~PgHG~~tt~~~e~~~n 209 (216) +.+.. +.|+.... .+.++--||-.+.-+.||-.+ T Consensus 232 i~~aa-~~Lk~~GA~~V~~~~THglfs~~a~e~l~~ 266 (319) T 3dah_A 232 LCKAA-QVLKERGAKQVFAYATHPVLSGGAADRIAA 266 (319) T ss_dssp HHHHH-HHHHHTTCSCEEEEEEEECCCTTHHHHHHT T ss_pred HHHHH-HHHHHCCCCEEEEEEECCCCCHHHHHHHHH T ss_conf 99999-999977998648997466448079999861 No 58 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Probab=68.88 E-value=3.3 Score=19.78 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=15.8 Q ss_pred HHHHHHHHHHCCCCC-EEEEECCCCCCCHHHHHHHC Q ss_conf 999999998519997-89984887988889998828 Q gi|254780758|r 175 LINSINNKILPLGDE-ISFVCGHGPNSTIGRERRLN 209 (216) Q Consensus 175 ~~~sl~~~l~~l~~~-~~v~PgHG~~tt~~~e~~~n 209 (216) +.+.. +.|+..... +.++--||=.+.-+.||-.+ T Consensus 233 l~~aa-~~Lk~~GA~~V~~~~THglfs~~A~~~l~~ 267 (317) T 1dku_A 233 ITLAA-NALVENGAKEVYACCTHPVLSGPAVERINN 267 (317) T ss_dssp HHHHH-HHHHHTTCSEEEEECSEECCCTTHHHHHHT T ss_pred HHHHH-HHHHHCCCCEEEEEEECCCCCCHHHHHHHC T ss_conf 99999-999976997789996534348379999860 No 59 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Probab=64.05 E-value=3.1 Score=19.87 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=12.4 Q ss_pred HHHCCCCC-EEEEECCCCCCCHHHHHHHC Q ss_conf 98519997-89984887988889998828 Q gi|254780758|r 182 KILPLGDE-ISFVCGHGPNSTIGRERRLN 209 (216) Q Consensus 182 ~l~~l~~~-~~v~PgHG~~tt~~~e~~~n 209 (216) .+...... +.++--||-.+.-+.||-.+ T Consensus 235 ~Lk~~GA~~V~~~aTHglfs~~a~e~l~~ 263 (326) T 2h06_A 235 KLLSAGATRVYAILTHGIFSGPAISRINN 263 (326) T ss_dssp HHHHTTEEEEEEEEEEECCCTTHHHHHHH T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHC T ss_conf 99857998656886434458179999864 No 60 >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} Probab=55.56 E-value=3.5 Score=19.61 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=4.7 Q ss_pred EEEEEECCCCCC Q ss_conf 529998698852 Q gi|254780758|r 52 VKQIWITHGHVD 63 (216) Q Consensus 52 i~~Ii~TH~H~D 63 (216) +..+++|+..+| T Consensus 313 ~~~vvit~~TYd 324 (755) T 2vyc_A 313 PSYCVVTNCTYD 324 (755) T ss_dssp CSCEEEESSCTT T ss_pred CCEEEEECCCCC T ss_conf 858999657768 No 61 >1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A* Probab=54.51 E-value=8.3 Score=17.41 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHHHHCH Q ss_conf 999999999851999-7899848879888899988281 Q gi|254780758|r 174 QLINSINNKILPLGD-EISFVCGHGPNSTIGRERRLNP 210 (216) Q Consensus 174 ~~~~sl~~~l~~l~~-~~~v~PgHG~~tt~~~e~~~n~ 210 (216) .+.++. +.++.... ++..+--||=.+.-+.||-.+. T Consensus 220 Tl~~aa-~~Lk~~GA~~V~~~~THgifs~~a~~~l~~~ 256 (284) T 1u9y_A 220 TMATAV-KLLKEQGAKKIIAACVHPVLIGDALNKLYSA 256 (284) T ss_dssp HHHHHH-HHHHHTTCCSEEEEEEECCCCTTHHHHHHHH T ss_pred HHHHHH-HHHHHCCCCEEEEEEECCCCCHHHHHHHHHC T ss_conf 799999-9998669986999997973884799999738 No 62 >3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Probab=43.78 E-value=15 Score=15.93 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=28.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH Q ss_conf 224721000001234321111000001356634679899999999999985199978998488798888 Q gi|254780758|r 134 PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTI 202 (216) Q Consensus 134 PGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~ 202 (216) +||-||++.+-..+ ++..|..|+ +.+++.+-+.++-......+++|+|-|-.++. T Consensus 215 ~GHIPGA~n~p~~~---~~~~~~~~k-----------~~~el~~~~~~~gi~~~k~vI~YC~sG~~As~ 269 (302) T 3olh_A 215 PGHIPGTVNIPFTD---FLSQEGLEK-----------SPEEIRHLFQEKKVDLSKPLVATCGSGVTACH 269 (302) T ss_dssp CCCCTTCEECCGGG---GBCSSSCBC-----------CHHHHHHHHHHTTCCTTSCEEEECSSSSTTHH T ss_pred CCCCCCCCCCCHHH---HHHCCCCCC-----------CHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH T ss_conf 78868962177899---500032359-----------99999999997499999999998583999999 No 63 >1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Probab=37.81 E-value=19 Score=15.38 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=9.8 Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCC Q ss_conf 99997499752999869885210110 Q gi|254780758|r 43 DVIQSRNFHVKQIWITHGHVDHVGGA 68 (216) Q Consensus 43 ~~l~~~~~~i~~Ii~TH~H~DH~gg~ 68 (216) +.++..++++ ++..+.-|...+. T Consensus 69 ~~l~~~~ipv---~~i~GNHD~~~~~ 91 (333) T 1ii7_A 69 QIPKEHSIPV---FAIEGNHDRTQRG 91 (333) T ss_dssp HHHHTTTCCE---EEECCTTTCCSSS T ss_pred HHHHHCCCCE---EEECCCCCCHHCC T ss_conf 9998689959---9964666621000 No 64 >1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Probab=34.40 E-value=21 Score=15.05 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=26.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH Q ss_conf 224721000001234321111000001356634679899999999999985199978998488798888 Q gi|254780758|r 134 PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTI 202 (216) Q Consensus 134 PGHt~g~~~~~~~~~~~lftGD~lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt~ 202 (216) +||-||++.+-..+ ++..|..|+ +.+++.+-+.+.-...+..+++|.+-|-.+++ T Consensus 201 ~GhIPGAvnip~~~---~~~~~~~~k-----------~~~el~~~~~~~gi~~~k~ii~yC~sG~rAs~ 255 (296) T 1rhs_A 201 SGHIRGSVNMPFMN---FLTEDGFEK-----------SPEELRAMFEAKKVDLTKPLIATCRKGVTACH 255 (296) T ss_dssp CCEETTCEECCGGG---GBCTTSCBC-----------CHHHHHHHHHHTTCCTTSCEEEECSSSSTHHH T ss_pred CCCCCCCCCCCHHH---HHCCCCCCC-----------CHHHHHHHHHHCCCCCCCCEEEECCHHHHHHH T ss_conf 76777865578899---715544579-----------99999999997599999999998971999999 No 65 >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Probab=25.43 E-value=21 Score=15.13 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=36.2 Q ss_pred EECCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCC---CCCCCH--HHHCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9647839976201233101-222472100000123432---111100--000135663467989999999999998519 Q gi|254780758|r 114 WLQDGDTLLLGTHIFKVFH-CPGHSPGHVIYVNFENNF---AHLGDT--LFRSSIGRTDILHGDYQQLINSINNKILPL 186 (216) Q Consensus 114 ~l~~gd~i~lg~~~~~vi~-tPGHt~g~~~~~~~~~~~---lftGD~--lf~~~~G~~d~~~~d~~~~~~sl~~~l~~l 186 (216) .+.++..+.+||..+..-. .-|||.|++.+.---+.+ +=-||- +|+.+- ..+-+.|...+++-+.+++..- T Consensus 220 ~~~~~~~l~LgGv~i~~~~gl~gHSDgDV~lHAi~DAilGa~~~gDIG~~fp~~d--~~~k~~~S~~~l~~~~~~~~~~ 296 (371) T 1w55_A 220 EFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTD--MKFKNANSMELLKQAYDKVREI 296 (371) T ss_dssp EEEEESCEEETTEEEESSEEECSSTTCCHHHHHHHHHHHHHTTCCCHHHHSCCTT--STTTTCCHHHHHHHHHHHHHHT T ss_pred EECCCCEEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHCCCCC--CCCCCCCCHHHHHHHHHHHHHC T ss_conf 8348966999415027877624874874117889998765504775787545433--3124467199999999999985 No 66 >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} Probab=24.79 E-value=31 Score=14.06 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=12.4 Q ss_pred EEECCCCCHHHHHHHHHHCCCCE Q ss_conf 99838999999999999749975 Q gi|254780758|r 30 VVVDPGGDLDIIKDVIQSRNFHV 52 (216) Q Consensus 30 ilID~G~~~~~i~~~l~~~~~~i 52 (216) -+||-+++...+.++|++.|.++ T Consensus 24 gVi~~~Gn~~s~~~aL~~lG~~~ 46 (208) T 2iss_D 24 GVLGVQGDVREHVEALHKLGVET 46 (208) T ss_dssp EEECSSSCHHHHHHHHHHTTCEE T ss_pred EEEECCCCHHHHHHHHHHCCCCE T ss_conf 99956887999999999889989 No 67 >2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Probab=24.66 E-value=26 Score=14.54 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=14.6 Q ss_pred EEECCCCEEEEECCCCCCCCCCC Q ss_conf 89647839976201233101222 Q gi|254780758|r 113 RWLQDGDTLLLGTHIFKVFHCPG 135 (216) Q Consensus 113 ~~l~~gd~i~lg~~~~~vi~tPG 135 (216) ..|.+||.+.+|...++++..|+ T Consensus 120 ~~L~~gD~i~iG~~~l~f~~~p~ 142 (143) T 2kb3_A 120 QVMQTGDEIQIGKFRLVFLAGPA 142 (143) T ss_dssp EECCTTEEEEETTEEEEEEECCC T ss_pred EECCCCCEEEECCEEEEEEECCC T ss_conf 79999999999999999993899 No 68 >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Probab=24.43 E-value=32 Score=14.02 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=28.2 Q ss_pred CEEEEEECCCCEEEE-ECCCCC---HHHHHHHHHHCCCCEEEEEE Q ss_conf 169999889984999-838999---99999999974997529998 Q gi|254780758|r 17 NCTFLFDEESLEAVV-VDPGGD---LDIIKDVIQSRNFHVKQIWI 57 (216) Q Consensus 17 N~~li~~~~~~~~il-ID~G~~---~~~i~~~l~~~~~~i~~Ii~ 57 (216) ++|+..+...+.++| +|-|++ ...+++.|++.+++.+.-++ T Consensus 45 ~~~~~g~~~~k~V~LTFDDG~~~~~t~~iLd~Lk~~~vkATFFv~ 89 (247) T 2j13_A 45 GGFYLGDTKKKDIYLTFDNGYENGYTGKILDVLKEKKVPATFFVT 89 (247) T ss_dssp TEESBCCTTSCEEEEEEEESSCCSCHHHHHHHHHHHTCCEEEEEC T ss_pred CCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 968978999998999874899856499999999986983999986 No 69 >3aay_A Putative thiosulfate sulfurtransferase; X-RAY crystallography, sulfurtranserase, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Probab=23.75 E-value=33 Score=13.94 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=13.3 Q ss_pred CHHHHHHHHHHCCCCE-EEEEE Q ss_conf 9999999999749975-29998 Q gi|254780758|r 37 DLDIIKDVIQSRNFHV-KQIWI 57 (216) Q Consensus 37 ~~~~i~~~l~~~~~~i-~~Ii~ 57 (216) +.+.+.+.+++.|+.- +.|++ T Consensus 61 ~~~~~~~~l~~lGI~~~~~VVv 82 (277) T 3aay_A 61 DAQQFSKLLSERGIANEDTVIL 82 (277) T ss_dssp CHHHHHHHHHHHTCCTTSEEEE T ss_pred CHHHHHHHHHHCCCCCCCEEEE T ss_conf 7999999998729788998999 No 70 >3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure initiative; 2.20A {Chlamydia trachomatis D} Probab=23.64 E-value=25 Score=14.65 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.0 Q ss_pred CCCEEEECCCCEEEEECCCCCCCCCCC Q ss_conf 674189647839976201233101222 Q gi|254780758|r 109 ASSDRWLQDGDTLLLGTHIFKVFHCPG 135 (216) Q Consensus 109 ~~~~~~l~~gd~i~lg~~~~~vi~tPG 135 (216) ......+.+||.+.+|+..++++..++ T Consensus 78 v~~~~~L~~gd~i~iG~~~~~~~~~~~ 104 (106) T 3gqs_A 78 IEHQSTLSANQVVALGTTLFLLVDYAA 104 (106) T ss_dssp CSSEEECCTTCCEEETTEEEEEEEEC- T ss_pred CCCEEECCCCCEEEECCEEEEEEECCC T ss_conf 477389999999999899999992699 No 71 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=23.13 E-value=34 Score=13.87 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=7.1 Q ss_pred CCCCCCCCCCHH Q ss_conf 234321111000 Q gi|254780758|r 146 FENNFAHLGDTL 157 (216) Q Consensus 146 ~~~~~lftGD~l 157 (216) +.+++|+.=|.+ T Consensus 116 ~G~rVLIVDDvl 127 (186) T 1l1q_A 116 PHDVVLLHDDVL 127 (186) T ss_dssp TTCCEEEEEEEE T ss_pred CCCEEEEEEEHH T ss_conf 899899995343 No 72 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Probab=22.30 E-value=35 Score=13.78 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=7.2 Q ss_pred CCCCCCCCCCCHH Q ss_conf 1234321111000 Q gi|254780758|r 145 NFENNFAHLGDTL 157 (216) Q Consensus 145 ~~~~~~lftGD~l 157 (216) .+..++|+.=|.+ T Consensus 120 ~~G~rVlIVDDvi 132 (187) T 1g2q_A 120 PAGSNVIIVDDII 132 (187) T ss_dssp CTTCEEEEEEEEE T ss_pred CCCCEEEEEECCC T ss_conf 6786799983004 No 73 >2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Probab=21.83 E-value=36 Score=13.72 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=4.4 Q ss_pred CCCCCCCCCCHHH Q ss_conf 9885210110567 Q gi|254780758|r 59 HGHVDHVGGAAQL 71 (216) Q Consensus 59 H~H~DH~gg~~~l 71 (216) |.|.-|......+ T Consensus 5 ~~~~~~~~~~~~i 17 (126) T 2if1_A 5 HHHHHHTDPMSAI 17 (126) T ss_dssp CCCSSCCCGGGGC T ss_pred CCCCCCCCCCHHH T ss_conf 5444457810220 No 74 >1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1 Probab=21.03 E-value=37 Score=13.62 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=6.8 Q ss_pred CCCCCCCCCCHH Q ss_conf 234321111000 Q gi|254780758|r 146 FENNFAHLGDTL 157 (216) Q Consensus 146 ~~~~~lftGD~l 157 (216) .+.++++.=|.+ T Consensus 119 ~G~rVllVDDvi 130 (175) T 1vch_A 119 LNQRVVLVSDVV 130 (175) T ss_dssp TTCEEEEEEEEE T ss_pred CCCEEEEEEEEE T ss_conf 898899998441 No 75 >2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} Probab=20.82 E-value=38 Score=13.59 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=19.7 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCH---HHHHHHCCCEEECCH Q ss_conf 99999974997529998698852101105---678860795540584 Q gi|254780758|r 41 IKDVIQSRNFHVKQIWITHGHVDHVGGAA---QLKEDLSLTIIGPHK 84 (216) Q Consensus 41 i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~---~l~~~~~~~i~~~~~ 84 (216) +.+.+++.+.+++.|+-. -.+|.+ .+....+.+.+...+ T Consensus 52 la~~i~~~~~~~d~Ivg~-----~~gGipla~~va~~l~~p~~~~RK 93 (205) T 2wns_A 52 LFQTAQNAGISFDTVCGV-----PYTALPLATVICSTNQIPMLIRRK 93 (205) T ss_dssp HHHHHHHTTCCCSEEEEC-----TTTTHHHHHHHHHHHTCCEEEECC T ss_pred HHHHHHHCCCCCCEEEEC-----CHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 999888608888758712-----022189989888753899346762 No 76 >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A Probab=20.77 E-value=38 Score=13.59 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=16.4 Q ss_pred EEEECCCC--CH--HHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 99983899--99--9999999974997529998698852 Q gi|254780758|r 29 AVVVDPGG--DL--DIIKDVIQSRNFHVKQIWITHGHVD 63 (216) Q Consensus 29 ~ilID~G~--~~--~~i~~~l~~~~~~i~~Ii~TH~H~D 63 (216) +++||+.. .+ +.+.+.+.+.++++ -++++-...+ T Consensus 110 vlVVDa~~Gv~~qT~~v~~~~~~~~lp~-i~~INK~Dr~ 147 (529) T 2h5e_A 110 LMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRD 147 (529) T ss_dssp EEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSC T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCCE-EEEEEEECCC T ss_conf 9996468874233188887777517870-7544431467 No 77 >2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129} Probab=20.44 E-value=39 Score=13.55 Aligned_cols=13 Identities=15% Similarity=0.066 Sum_probs=7.3 Q ss_pred CCCCCCCCCCCHH Q ss_conf 1234321111000 Q gi|254780758|r 145 NFENNFAHLGDTL 157 (216) Q Consensus 145 ~~~~~~lftGD~l 157 (216) .+.+++++.=|.+ T Consensus 112 ~~g~rVlIVDDvi 124 (180) T 2p1z_A 112 VVGKKVLVVEDTT 124 (180) T ss_dssp CTTCEEEEEEEEC T ss_pred CCCCEEEEEEEEE T ss_conf 5897689997523 No 78 >1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A* Probab=20.43 E-value=39 Score=13.55 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=6.4 Q ss_pred CCCCCCCCCCHH Q ss_conf 234321111000 Q gi|254780758|r 146 FENNFAHLGDTL 157 (216) Q Consensus 146 ~~~~~lftGD~l 157 (216) ++.++|+.=|.+ T Consensus 195 ~g~rVLIVDDvi 206 (291) T 1o57_A 195 TGSNVLIIDDFM 206 (291) T ss_dssp TTCEEEEEEEEE T ss_pred CCCEEEEEHHHH T ss_conf 885699842423 No 79 >1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A* Probab=20.09 E-value=39 Score=13.50 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=15.7 Q ss_pred HHHCCCCEEEEEECCCCCCCCCCC---HHHHHHHCCCEEECCH Q ss_conf 997499752999869885210110---5678860795540584 Q gi|254780758|r 45 IQSRNFHVKQIWITHGHVDHVGGA---AQLKEDLSLTIIGPHK 84 (216) Q Consensus 45 l~~~~~~i~~Ii~TH~H~DH~gg~---~~l~~~~~~~i~~~~~ 84 (216) ++..+.+++.|+-- =.+|. ..+..+.+.+.+...+ T Consensus 65 ~k~~~~~~D~Ivgi-----e~~Gi~~A~~lA~~Lg~p~v~vRK 102 (236) T 1qb7_A 65 YRAMSPAPTHILGF-----DARGFLFGPMIAVELEIPFVLMRK 102 (236) T ss_dssp HHHCSSCCSEEEEE-----TTGGGGTHHHHHHHHTCCEEEEBC T ss_pred HHHCCCCCCEEEEE-----CCCCHHHHHHHHHHHHCCEEEEEE T ss_conf 98548999899966-----446589899999986347688653 Done!