RPSBLAST alignment of GI: 254780758 and protein with PDBid: 3af5

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651
 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 32/183 (17%), Positives = 46/183 (25%), Gaps = 26/183 (14%)

Query: 17  NCTFLFDEESLEAVVVDPGG-------------DLDIIKDVIQSRNFHVKQIWITHGHVD 63
           +   +  +     V+VD G                D  +     R   +  I ITH H+D
Sbjct: 203 SALLV--QTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLD 260

Query: 64  HVGGAAQL--KEDLSLTIIGPHKD---------DAAMMGKVDEQARLLSIRMNARNASSD 112
           H G    L         I               D   + + + Q  L   R         
Sbjct: 261 HCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHT 320

Query: 113 RWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDY 172
             L  G+   +   I    H  GH  G  I      N  H            T +L    
Sbjct: 321 ITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPAN 380

Query: 173 QQL 175
            + 
Sbjct: 381 AKF 383