RPSBLAST alignment of GI: 254780758 and protein with PDBid: 3af5
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651
Score = 44.3 bits (104), Expect = 2e-05
Identities = 32/183 (17%), Positives = 46/183 (25%), Gaps = 26/183 (14%)
Query: 17 NCTFLFDEESLEAVVVDPGG-------------DLDIIKDVIQSRNFHVKQIWITHGHVD 63
+ + + V+VD G D + R + I ITH H+D
Sbjct: 203 SALLV--QTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLD 260
Query: 64 HVGGAAQL--KEDLSLTIIGPHKD---------DAAMMGKVDEQARLLSIRMNARNASSD 112
H G L I D + + + Q L R
Sbjct: 261 HCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHT 320
Query: 113 RWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDY 172
L G+ + I H GH G I N H T +L
Sbjct: 321 ITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPAN 380
Query: 173 QQL 175
+
Sbjct: 381 AKF 383