RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] (216 letters) >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 254 Score = 105 bits (262), Expect = 3e-24 Identities = 62/246 (25%), Positives = 94/246 (38%), Gaps = 60/246 (24%) Query: 7 HIVQVTPFKQNCTFL-FDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHV 65 I V K N ++ DE++ VVDP + + I D ++ ++ I TH H DH Sbjct: 2 QIELVPCLKDNYAYILHDEDTGTVGVVDPS-EAEPIIDSLKRSGRNLTYILNTHHHYDHT 60 Query: 66 GGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT 125 GG +LK+ +IG D + G D L+DGD + Sbjct: 61 GGNLELKDRYGAKVIGSAMDKDRIPGI-------------------DMALKDGDKWMFAG 101 Query: 126 HIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILP 185 H V PGH+ GH+ + GDT+F S G+ + G +Q++ S+ KI Sbjct: 102 HEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGK--LFEGTPKQMLASL-QKITS 158 Query: 186 LGDEISFVCGHGPN------------------------------------STIGRERRLN 209 L D+ S CGH +T+ E+ N Sbjct: 159 LPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACN 218 Query: 210 PFLKSN 215 PFL+S+ Sbjct: 219 PFLRSS 224 >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Length = 251 Score = 86.1 bits (212), Expect = 2e-18 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 62/245 (25%) Query: 7 HIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVG 66 ++ + F+ N ++ + V+VDPG ++ I + + I++TH H DHVG Sbjct: 2 NLNSIPAFQDNYIWVLTNDEGRCVIVDPGEAAPVL-KAIAEHKWMPEAIFLTHHHHDHVG 60 Query: 67 GAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTH 126 G +L + + + + + DGDT+ + Sbjct: 61 GVKELLQHFPQMTVYGPAETQDKG--------------------ATHLVGDGDTIRVLGE 100 Query: 127 IFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPL 186 F +F PGH+ GHV Y F + GDTLF GR + G Q+ S+ KI L Sbjct: 101 KFTLFATPGHTLGHVCY--FSRPYLFCGDTLFSGGCGR--LFEGTPSQMYQSL-MKINSL 155 Query: 187 GDEISFVCGHGPN------------------------------------STIGRERRLNP 210 D+ C H + ER++N Sbjct: 156 PDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINL 215 Query: 211 FLKSN 215 FL++ Sbjct: 216 FLRTE 220 >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 Score = 84.7 bits (208), Expect = 6e-18 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 25/230 (10%) Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57 +L +I V + + +++D +IKD I F +K I Sbjct: 14 QLIDNIYYVGTDGIAVYVIKTSQ--GLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILN 71 Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD 117 TH H+DH GG A++K++ ++ +D + G + + DR +++ Sbjct: 72 THAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGG-YYPGDEKNEDLAFPAVKVDRAVKE 130 Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENN--------FAHLGDTLFRSSIGRTDILH 169 GD + LG PGHSPG + + F G +G+ Sbjct: 131 GDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPT-YA 189 Query: 170 GDYQQLINSINNKILPLGDEISFVCGHGP------NSTIGRERRLNPFLK 213 G + K + ++ + H ++ NPF+K Sbjct: 190 GIVDDYRATF-AKAKAMKIDV-LLGPHPEVYGMQAKRAEMKDGAPNPFIK 237 >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Length = 262 Score = 83.1 bits (204), Expect = 1e-17 Identities = 36/230 (15%), Positives = 80/230 (34%), Gaps = 24/230 (10%) Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNFH---VKQIWI 57 +++ ++ V + ++++ ++ +IK I+ F K + I Sbjct: 11 RIAGNLYYVGTDDLASYLIVTPR--GNILINSDLEANVPMIKASIKKLGFKFSDTKILLI 68 Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS-DRWLQ 116 +H H DH G+ +K+ + +D + ++ + S+ D+ L Sbjct: 69 SHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLH 128 Query: 117 DGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-------- 168 DG+ + LG + PGH+ G + + + SIG Sbjct: 129 DGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITY 188 Query: 169 HGDYQQLINSINNKILPLGDEISFVCGHGP------NSTIGRERRLNPFL 212 + +SI + + +I F+ H + + + NPF+ Sbjct: 189 PKIAEDYKHSI-KVLESMRCDI-FLGSHAGMFDLKNKYVLLSKGQNNPFV 236 >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Length = 200 Score = 81.1 bits (199), Expect = 7e-17 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 32/199 (16%) Query: 13 PFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72 N E +++DP + ++S +WI + DHV A ++ Sbjct: 20 NIDFNGFAWIRPE--GNILIDPVALSNHDWKHLESLG---GVVWIVLTNSDHVRSAKEIA 74 Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH 132 + I GP + D RWL DGD KV Sbjct: 75 DQTYTKIAGPVAEKENFPIYCD------------------RWLSDGDE---LVPGLKVME 113 Query: 133 CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT----DILHGDYQQLINSINNKILPLGD 188 G + + E GD + G D + Q+++ S+ ++ L Sbjct: 114 LQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASV-RRLAALEK 172 Query: 189 EISFVCGHG-PNSTIGRER 206 + + G G GR+R Sbjct: 173 VEAVLVGDGWSVFRDGRDR 191 >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Length = 230 Score = 80.8 bits (198), Expect = 7e-17 Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 19/209 (9%) Query: 12 TPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVGG 67 + N + D + E +++D ++ ++ + V + TH H D VGG Sbjct: 34 AVYPSNGLIVRDGD--ELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGG 91 Query: 68 AAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127 L+ T P A + S + GD + G + Sbjct: 92 VDVLRAAGVATYASPSTRRLAEV-----------EGNEIPTHSLEGLSSSGDAVRFG-PV 139 Query: 128 FKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKILPL 186 + HS +++ + + G ++ S + D + SI Sbjct: 140 ELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHY 199 Query: 187 GDEISFVCGHGPNSTIGRERRLNPFLKSN 215 + + GHG + + +K++ Sbjct: 200 PEAQFVIPGHGLPGGLDLLKHTTNVVKAH 228 >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 Score = 80.8 bits (198), Expect = 9e-17 Identities = 37/217 (17%), Positives = 65/217 (29%), Gaps = 23/217 (10%) Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57 +L + + + L E+ +V+ G D +++ + V I Sbjct: 9 QLDDDLCLLGDVQVPVFLLRLGEA-SWALVEGGISRDAELVWADLCRWVADPSQVHYWLI 67 Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS------ 111 TH H DH G L L + + + + A Sbjct: 68 THKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEAC 127 Query: 112 ------DRWLQDGDTLL-LGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGR 164 R + DG+ L H +V GHS HV++ + GD L Sbjct: 128 AWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAE 187 Query: 165 TDIL---HGDYQQLINSINNKILPLGDEISFVCGHGP 198 D + + S+ ++ L + + GHG Sbjct: 188 GVWRPLVFDDMEAYLESL-ERLQRLPTLLQLIPGHGG 223 >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Length = 266 Score = 79.7 bits (195), Expect = 2e-16 Identities = 34/221 (15%), Positives = 74/221 (33%), Gaps = 17/221 (7%) Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57 +++ H Q+ + + AV++D G + D +++R ++ I + Sbjct: 24 QIADHTWQIGTEDLTALLVQTPD--GAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILL 81 Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD 117 +H H DH G A+LK + + A ++ + + A++DR + D Sbjct: 82 SHAHADHAGPVAELKRRTGAKVAANA-ESAVLLARGGSDDLHFGDGITYPPANADRIVMD 140 Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDI-------LHG 170 G+ + +G +F GH+PG + + + S+ Sbjct: 141 GEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPH 200 Query: 171 DYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPF 211 + S + L ++ + H S Sbjct: 201 LIEDYRRSF-ATVRALPCDV-LLTPHPGASNWDYAAGARAG 239 >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Length = 220 Score = 78.1 bits (191), Expect = 5e-16 Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 22/185 (11%) Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDV---IQSRNFHVKQIWITHGHVDHVGGAAQLKE 73 + + EA ++D + + R + +K +H H D GG L Sbjct: 32 HGLVVLVNA--EAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNS 89 Query: 74 DLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC 133 L + + L+ I + Sbjct: 90 R-----------SIPTYASELTNELL----KKDGKVQATNSFSGVNYWLVKNKIEVFYPG 134 Query: 134 PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFV 193 PGH+P +V+ E G + +G ++ + + S G V Sbjct: 135 PGHTPDNVVVWLPERKILFGGCFIKPYGLG--NLGDANIEAWPKSAKLLKSKYGKAKLVV 192 Query: 194 CGHGP 198 H Sbjct: 193 PSHSE 197 >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Length = 221 Score = 77.3 bits (189), Expect = 1e-15 Identities = 41/203 (20%), Positives = 63/203 (31%), Gaps = 23/203 (11%) Query: 17 NCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72 N L + V+VD D +I+ V + V + ITH H D +GG LK Sbjct: 36 NGLVLNTSK--GLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLK 93 Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH 132 E I A + LQ L G + F+ Sbjct: 94 ER---GIKAHSTALTAELA------------KKNGYEEPLGDLQTVTNLKFGNMKVETFY 138 Query: 133 C-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKILPLGDEI 190 GH+ +++ + N G + +S + + SI N + + Sbjct: 139 PGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNIN 198 Query: 191 SFVCGHGPNSTIGRERRLNPFLK 213 + V GHG G LK Sbjct: 199 AVVPGHGEVGDKGLLLHTLDLLK 221 >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Length = 230 Score = 72.8 bits (177), Expect = 2e-14 Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 23/209 (11%) Query: 11 VTPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVG 66 N + + +A ++D + ++ V S + V H H D +G Sbjct: 30 WGMVPSNGMIVINNH--QAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIG 87 Query: 67 GAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTH 126 G L++ + + + + D T+ L Sbjct: 88 GLGYLQK---------------KGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGM 132 Query: 127 IFKVFH-CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT-DILHGDYQQLINSINNKIL 184 + ++ GH+ +++ N G L + +I D +++ Sbjct: 133 PLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKA 192 Query: 185 PLGDEISFVCGHGPNSTIGRERRLNPFLK 213 V GHG + Sbjct: 193 KFPSARYVVPGHGDYGGTELIEHTKQIVN 221 >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 260 Score = 70.7 bits (172), Expect = 8e-14 Identities = 47/251 (18%), Positives = 76/251 (30%), Gaps = 66/251 (26%) Query: 7 HIVQVTPFKQNCTFL-FDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHV 65 + + N +L D+E+ EA +VDP ++ D + + + TH H DH Sbjct: 2 KVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVV-DAARKHGVKLTTVLTTHHHWDHA 60 Query: 66 GGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT 125 GG +L + S + D + + TL +G+ Sbjct: 61 GGNEKLVKLESGLKVYGGDDRIGAL---------------------THKITHLSTLQVGS 99 Query: 126 HIFKVFHCPGHSPGHVIYV-----NFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN 180 K P H+ GH+ Y E GDTLF G G ++ ++ Sbjct: 100 LNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLF--VAGCGKFYEGTADEMCKALL 157 Query: 181 NKILPLGDEISFVCGHGPN------------------------------------STIGR 204 + L + CGH ST+ Sbjct: 158 EVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAE 217 Query: 205 ERRLNPFLKSN 215 E NPF++ Sbjct: 218 EFTYNPFMRVR 228 >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Length = 228 Score = 67.3 bits (163), Expect = 1e-12 Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 13/189 (6%) Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVI----QSRNFHVKQIWITHGHVDHVGGAAQLK 72 N F + VV D +++ + V ++ T+ H D GG A K Sbjct: 24 NSMVYFGAK--GVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWK 81 Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRW---LQDGDTLLLGTHIFK 129 ++ + M E + + DGD L + Sbjct: 82 SI-GAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRA 140 Query: 130 VFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDE 189 + P H+P + + + G + + +G D + ++ Sbjct: 141 FYAGPAHTPDGIFVYFPDEQVLYGGC-ILKEKLGNLS--FADVKAYPQTLERLKAMKLPI 197 Query: 190 ISFVCGHGP 198 + + GH Sbjct: 198 KTVIGGHDS 206 >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Length = 219 Score = 67.0 bits (162), Expect = 1e-12 Identities = 28/215 (13%), Positives = 52/215 (24%), Gaps = 23/215 (10%) Query: 5 SFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQS----RNFHVKQIWITHG 60 +++ T + N +L ++ VV+D D K V TH Sbjct: 16 TYNTFNGTKYAANAVYLVTDK--GVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHS 73 Query: 61 HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120 H D GG + A + L + + Sbjct: 74 HDDRAGGLEYFGK-----------IGAKTYSTKMTDSILAKENKPRAQ----YTFDNNKS 118 Query: 121 LLLGTHIFKVFHCPGHSPGHVIYVNFE-NNFAHLGDTLFRSSIGRTDILH-GDYQQLINS 178 +G F+V++ + V F G + + + S Sbjct: 119 FKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQS 178 Query: 179 INNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213 ++N V GH + + Sbjct: 179 VHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLIN 213 >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 249 Score = 58.4 bits (140), Expect = 4e-10 Identities = 25/224 (11%), Positives = 57/224 (25%), Gaps = 43/224 (19%) Query: 17 NCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQ 70 N + D++ +VD + + +K + + + + H DH G Sbjct: 37 NAYLIVDDK---TALVDTVYEPFKEELIAKLKQIKDPVK--LDYLVVNHTESDHAGAFPA 91 Query: 71 LKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKV 130 + E + + + + + ++ G ++ LG Sbjct: 92 IMELCPDAHVLCTQRAFDSL-----------KAHYSHIDFNYTIVKTGTSVSLGKRSLTF 140 Query: 131 FHCP-GHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDI-------------------LHG 170 P H P + E D + + Sbjct: 141 IEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILM 200 Query: 171 DYQQLINSINNKILPLGDEISFVC-GHGPNSTIGRERRLNPFLK 213 + LI ++I + I + HG R + + + Sbjct: 201 PFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYAR 244 >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 Score = 53.7 bits (128), Expect = 1e-08 Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 46/236 (19%) Query: 6 FHIVQVTP--FKQNCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWI 57 F V P N + V++D +D + ++ + + I + Sbjct: 28 FEAVWEIPEGISYNAYLVKLNG--ANVLIDGWKGNYAKEFIDALSKIVDPK--EITHIIV 83 Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD 117 H DH G + + + + + ++D Sbjct: 84 NHTEPDHSGSLPATLKTIGHDVEIIASNFGKRL------------LEGFYGIKDVTVVKD 131 Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT------------ 165 G+ +G FK P + + + D + Sbjct: 132 GEEREIGGKKFKFVMTPWLHWPDTMVT-YLDGILFSCDVGGGYLLPEILDDSNESVVERY 190 Query: 166 --------DILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213 + G Y+ I K+ L + + GHG +R LN ++ Sbjct: 191 LPHVTKYIVTVIGHYKNYILEGAEKLSSLKIKA-LLPGHGLIWKKDPQRLLNHYVS 245 >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 505 Score = 52.5 bits (125), Expect = 3e-08 Identities = 34/232 (14%), Positives = 63/232 (27%), Gaps = 45/232 (19%) Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFH-----VKQIWITHGHVDHVGGAAQL 71 N TF+ + +VVD + + + ++ + +H H DH GG L Sbjct: 105 NITFIRGDSGW--IVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGL 162 Query: 72 KEDLSL-----TIIGPHKDDAAMMGKVDEQARLLSIR----------------------- 103 E + II P A + + + R Sbjct: 163 VEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGK 222 Query: 104 -----MNARNASSDRWLQDGDTLLLGTHIFKVFHCPG-HSPGHVIYVNFENNFAHLGDTL 157 + A + +G+ L+L F + PG SP + + + + Sbjct: 223 GLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENV 282 Query: 158 FRSSIGRTDIL---HGDYQQLINSINNKILPLGDEISFVC-GHGPNSTIGRE 205 + + D IN + G + + H E Sbjct: 283 VGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMFAVHNWPRWGNAE 334 >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Length = 294 Score = 50.0 bits (118), Expect = 1e-07 Identities = 39/223 (17%), Positives = 64/223 (28%), Gaps = 29/223 (13%) Query: 13 PFKQNCTFLFDEESLEAVVVDPGG------DLDIIKDVIQSRNFH---VKQIWITHGHVD 63 P + + T + V+VD G L + +++ + V +I+ITH H D Sbjct: 57 PLETSVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPD 116 Query: 64 HVGGAAQLKEDLSLTIIGPHKDDAAMM----------GKVDEQARLLSIRMNARNASSDR 113 HVGG ++ + A + + + Sbjct: 117 HVGGLMVGEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAG 176 Query: 114 WLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFEN--NFAHLGDTLFRSSIGRTDI---- 167 + K GH+PGH YV A LGD + +++ D Sbjct: 177 KFKPFSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLILVAAVQFDDPSVTT 236 Query: 168 -LHGDYQQLINSINNKILPL--GDEISFVCGHGPNSTIGRERR 207 L D + + K H IG R Sbjct: 237 QLDSDSKSVAVER-KKAFADAAKGGYLIAASHLSFPGIGHIRA 278 >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Length = 207 Score = 48.6 bits (114), Expect = 5e-07 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 18/190 (9%) Query: 16 QNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNFH---VKQIWITHGHVDHVGGAAQ 70 T ++ E +++DPG +D +++ + + TH H+DH+ + Sbjct: 21 HFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVL 80 Query: 71 LKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKV 130 + + + ++ + +S + L KV Sbjct: 81 FEN------ATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKV 134 Query: 131 FHCPGHSPGHVIYVNFENNFAHL---GDTLFRSSIGRTDILHGDYQQLINSINNKILPLG 187 FH P H+ H+ ++ N + GD I Q+ N ++ +G Sbjct: 135 FHTPWHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDR----VG 190 Query: 188 DEISFVCGHG 197 V H Sbjct: 191 RIDLLVFPHD 200 >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Score = 45.0 bits (105), Expect = 4e-06 Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 5/131 (3%) Query: 30 VVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89 + DP + + +++ ++++H H+DH L + L + K Sbjct: 10 DLYDPRLGYEYHG--AEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNS 67 Query: 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGH--SPGHVIYVNFE 147 + + + S L D + +G ++ ++ + Sbjct: 68 LNRKGDFLI-PSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPD 126 Query: 148 NNFAHLGDTLF 158 + + GD Sbjct: 127 HFITYTGDLRL 137 >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Score = 33.4 bits (75), Expect = 0.015 Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 13/156 (8%) Query: 17 NCTFLFDEESLEAVVVD----PGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQL- 71 + L V++D G + V + +TH H+DHVG +L Sbjct: 15 SAHLLLAGGRR--VLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLF 72 Query: 72 KEDLSLTIIGPHKDDAAMMGKVDEQA-----RLLSIRMNARNASSDRWLQDGDTLLLGTH 126 +E + M +++ R L+ G+ L LG Sbjct: 73 REGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGAL 132 Query: 127 IFKVFHCPGHSPGHVIYVNFEN-NFAHLGDTLFRSS 161 + E + GD R Sbjct: 133 SLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREK 168 >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Score = 32.4 bits (72), Expect = 0.027 Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 12/158 (7%) Query: 17 NCTFLFDEESLEAVVVDPG-----GDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQL 71 +C L + +++D G +D + + + + I+H H+DH G Sbjct: 18 SCIILEFKGRK--IMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWF 75 Query: 72 KEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVF 131 L LLS + N S+D L L + Sbjct: 76 -----LQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETI 130 Query: 132 HCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILH 169 + I + LG +F I +L+ Sbjct: 131 NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLY 168 >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Score = 32.5 bits (73), Expect = 0.027 Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 25/140 (17%) Query: 30 VVVDPGGD--LDIIKDVIQSRNFHVKQI---WITHGHVDHVGGAAQL------KEDLSLT 78 +++DPG + + I+ + +I ++ ++ +G + L + Sbjct: 27 LLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQ 86 Query: 79 IIGPH----------KDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD-GDTLLLGT-- 125 + D A G + + + + L + Sbjct: 87 VYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRY 146 Query: 126 -HIFKVFHCPGHSPGHVIYV 144 + + + G PG I+ Sbjct: 147 DGLTLLAYNAGVCPGGSIWC 166 >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Score = 32.4 bits (72), Expect = 0.029 Identities = 13/143 (9%), Positives = 35/143 (24%), Gaps = 9/143 (6%) Query: 17 NCTFLFDEESLEAVVVDPGGD-------LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAA 69 + ++ + ++ + D ++ R+ + I + +DH G Sbjct: 39 QSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLL 98 Query: 70 QLKEDLSLTI--IGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127 L+E + D + + + + L Sbjct: 99 SLREGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTP 158 Query: 128 FKVFHCPGHSPGHVIYVNFENNF 150 F + H + +N Sbjct: 159 FPLRSAAPPYSPHRFDPHPGDNL 181 >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 Score = 30.0 bits (66), Expect = 0.17 Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 15/185 (8%) Query: 39 DIIKDVIQSRNF-HVKQIWITHGHVDHVGGAAQLKEDLSL-TIIGPHKDDA------AMM 90 D + ++ + + I +TH H DH+G +L + + D+ + Sbjct: 60 DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 119 Query: 91 GKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH-CPGHSPGHVIYVNFENN 149 + ++L + Q G ++++ + +++N Sbjct: 120 DNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDN 179 Query: 150 FAHLGDTLFRSSIGRTDILHGD--YQQLINSINNKILPLGDEISFVCGHGPNSTIGRE-- 205 L + G+ L GD ++ D + F H N + ++ Sbjct: 180 SNSLISVV--KVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKFNHHHDTNKSNTKDFI 237 Query: 206 RRLNP 210 + L+P Sbjct: 238 KNLSP 242 >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 114 Score = 28.4 bits (63), Expect = 0.43 Identities = 11/55 (20%), Positives = 19/55 (34%) Query: 37 DLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMG 91 L+I + + I +G + A+ E IGP + +MG Sbjct: 60 YLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114 >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 Score = 28.6 bits (62), Expect = 0.48 Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 52 VKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN 108 K +++THGHVDH+ G + + + K + + + + N Sbjct: 41 FKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRAN 97 >d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Length = 431 Score = 26.9 bits (59), Expect = 1.3 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 137 SPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKIL---PLGDEISFV 193 +PG + +++ + + L + IL P +S++ Sbjct: 294 TPGGLKWLSNWGVLRYAAAESMVMLVYCKQNPDQSLLDLAKKQVDYILGDNPAN--MSYI 351 Query: 194 CGHGPNS 200 G+G N Sbjct: 352 IGYGSNW 358 >d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Score = 25.8 bits (56), Expect = 2.8 Identities = 9/33 (27%), Positives = 12/33 (36%) Query: 102 IRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP 134 ++ + S LQ G L GT F P Sbjct: 75 TYVDGQRISETTMLQSGMRLQFGTSHVFKFVDP 107 >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 Score = 26.0 bits (56), Expect = 2.8 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 6/147 (4%) Query: 54 QIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLS-IRMNARNASSD 112 + + GH+D G+ ++ ++ DDA+ + V E R+LS + + + Sbjct: 90 EWIVIGGHLDSTIGSHTNEQSVAPGAD----DDASGIAAVTEVIRVLSENNFQPKRSIAF 145 Query: 113 RWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDY 172 + L G+ + N+ + + Sbjct: 146 MAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLDMTNYKGSAQDVVFITDYTDSNFTQYL 205 Query: 173 QQLINSINNKILPLGDEISFVCG-HGP 198 QL++ + D + C H Sbjct: 206 TQLMDEYLPSLTYGFDTCGYACSDHAS 232 >d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 243 Score = 25.8 bits (57), Expect = 3.1 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 7/66 (10%) Query: 2 SKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDII----KDVIQ---SRNFHVKQ 54 K+ F + +N T + + V+V G LD I D I+ + V Q Sbjct: 60 KKVGFDLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQ 119 Query: 55 IWITHG 60 Sbjct: 120 ALKEAK 125 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.140 0.427 Gapped Lambda K H 0.267 0.0458 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 843,474 Number of extensions: 38642 Number of successful extensions: 153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 42 Length of query: 216 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 134 Effective length of database: 1,281,736 Effective search space: 171752624 Effective search space used: 171752624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (24.1 bits)