RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780758|ref|YP_003065171.1| hypothetical protein
CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
           hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 254

 Score =  105 bits (262), Expect = 3e-24
 Identities = 62/246 (25%), Positives = 94/246 (38%), Gaps = 60/246 (24%)

Query: 7   HIVQVTPFKQNCTFL-FDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHV 65
            I  V   K N  ++  DE++    VVDP  + + I D ++    ++  I  TH H DH 
Sbjct: 2   QIELVPCLKDNYAYILHDEDTGTVGVVDPS-EAEPIIDSLKRSGRNLTYILNTHHHYDHT 60

Query: 66  GGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT 125
           GG  +LK+     +IG   D   + G                    D  L+DGD  +   
Sbjct: 61  GGNLELKDRYGAKVIGSAMDKDRIPGI-------------------DMALKDGDKWMFAG 101

Query: 126 HIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILP 185
           H   V   PGH+ GH+      +     GDT+F  S G+  +  G  +Q++ S+  KI  
Sbjct: 102 HEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGK--LFEGTPKQMLASL-QKITS 158

Query: 186 LGDEISFVCGHGPN------------------------------------STIGRERRLN 209
           L D+ S  CGH                                       +T+  E+  N
Sbjct: 159 LPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACN 218

Query: 210 PFLKSN 215
           PFL+S+
Sbjct: 219 PFLRSS 224


>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione
           hydrolase) {Salmonella typhimurium [TaxId: 90371]}
          Length = 251

 Score = 86.1 bits (212), Expect = 2e-18
 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 62/245 (25%)

Query: 7   HIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVG 66
           ++  +  F+ N  ++   +    V+VDPG    ++   I    +  + I++TH H DHVG
Sbjct: 2   NLNSIPAFQDNYIWVLTNDEGRCVIVDPGEAAPVL-KAIAEHKWMPEAIFLTHHHHDHVG 60

Query: 67  GAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTH 126
           G  +L +      +    +                         +   + DGDT+ +   
Sbjct: 61  GVKELLQHFPQMTVYGPAETQDKG--------------------ATHLVGDGDTIRVLGE 100

Query: 127 IFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPL 186
            F +F  PGH+ GHV Y  F   +   GDTLF    GR  +  G   Q+  S+  KI  L
Sbjct: 101 KFTLFATPGHTLGHVCY--FSRPYLFCGDTLFSGGCGR--LFEGTPSQMYQSL-MKINSL 155

Query: 187 GDEISFVCGHGPN------------------------------------STIGRERRLNP 210
            D+    C H                                         +  ER++N 
Sbjct: 156 PDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINL 215

Query: 211 FLKSN 215
           FL++ 
Sbjct: 216 FLRTE 220


>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
           {Bradyrhizobium japonicum [TaxId: 375]}
          Length = 264

 Score = 84.7 bits (208), Expect = 6e-18
 Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 25/230 (10%)

Query: 3   KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57
           +L  +I  V         +   +    +++D        +IKD I    F    +K I  
Sbjct: 14  QLIDNIYYVGTDGIAVYVIKTSQ--GLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILN 71

Query: 58  THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD 117
           TH H+DH GG A++K++    ++   +D   + G         +  +       DR +++
Sbjct: 72  THAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGG-YYPGDEKNEDLAFPAVKVDRAVKE 130

Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENN--------FAHLGDTLFRSSIGRTDILH 169
           GD + LG         PGHSPG   +     +        F   G       +G+     
Sbjct: 131 GDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPT-YA 189

Query: 170 GDYQQLINSINNKILPLGDEISFVCGHGP------NSTIGRERRLNPFLK 213
           G       +   K   +  ++  +  H             ++   NPF+K
Sbjct: 190 GIVDDYRATF-AKAKAMKIDV-LLGPHPEVYGMQAKRAEMKDGAPNPFIK 237


>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
           gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
          Length = 262

 Score = 83.1 bits (204), Expect = 1e-17
 Identities = 36/230 (15%), Positives = 80/230 (34%), Gaps = 24/230 (10%)

Query: 3   KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNFH---VKQIWI 57
           +++ ++  V         +        ++++     ++ +IK  I+   F     K + I
Sbjct: 11  RIAGNLYYVGTDDLASYLIVTPR--GNILINSDLEANVPMIKASIKKLGFKFSDTKILLI 68

Query: 58  THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS-DRWLQ 116
           +H H DH  G+  +K+      +   +D + ++          +        S+ D+ L 
Sbjct: 69  SHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLH 128

Query: 117 DGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-------- 168
           DG+ + LG  +      PGH+ G   +     +       +   SIG             
Sbjct: 129 DGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITY 188

Query: 169 HGDYQQLINSINNKILPLGDEISFVCGHGP------NSTIGRERRLNPFL 212
               +   +SI   +  +  +I F+  H           +  + + NPF+
Sbjct: 189 PKIAEDYKHSI-KVLESMRCDI-FLGSHAGMFDLKNKYVLLSKGQNNPFV 236


>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena
           variabilis [TaxId: 1172]}
          Length = 200

 Score = 81.1 bits (199), Expect = 7e-17
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 32/199 (16%)

Query: 13  PFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72
               N       E    +++DP    +     ++S       +WI   + DHV  A ++ 
Sbjct: 20  NIDFNGFAWIRPE--GNILIDPVALSNHDWKHLESLG---GVVWIVLTNSDHVRSAKEIA 74

Query: 73  EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH 132
           +     I GP  +        D                  RWL DGD         KV  
Sbjct: 75  DQTYTKIAGPVAEKENFPIYCD------------------RWLSDGDE---LVPGLKVME 113

Query: 133 CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT----DILHGDYQQLINSINNKILPLGD 188
             G      + +  E      GD +     G      D    + Q+++ S+  ++  L  
Sbjct: 114 LQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASV-RRLAALEK 172

Query: 189 EISFVCGHG-PNSTIGRER 206
             + + G G      GR+R
Sbjct: 173 VEAVLVGDGWSVFRDGRDR 191


>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
           aeruginosa, VIM-2 [TaxId: 287]}
          Length = 230

 Score = 80.8 bits (198), Expect = 7e-17
 Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 19/209 (9%)

Query: 12  TPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVGG 67
             +  N   + D +  E +++D          ++ ++ +     V +   TH H D VGG
Sbjct: 34  AVYPSNGLIVRDGD--ELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGG 91

Query: 68  AAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127
              L+     T   P     A +                   S +     GD +  G  +
Sbjct: 92  VDVLRAAGVATYASPSTRRLAEV-----------EGNEIPTHSLEGLSSSGDAVRFG-PV 139

Query: 128 FKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKILPL 186
              +    HS  +++      +  + G  ++  S      +   D  +   SI       
Sbjct: 140 ELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHY 199

Query: 187 GDEISFVCGHGPNSTIGRERRLNPFLKSN 215
            +    + GHG    +   +     +K++
Sbjct: 200 PEAQFVIPGHGLPGGLDLLKHTTNVVKAH 228


>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 298

 Score = 80.8 bits (198), Expect = 9e-17
 Identities = 37/217 (17%), Positives = 65/217 (29%), Gaps = 23/217 (10%)

Query: 3   KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57
           +L   +  +   +     L   E+    +V+ G   D +++   +         V    I
Sbjct: 9   QLDDDLCLLGDVQVPVFLLRLGEA-SWALVEGGISRDAELVWADLCRWVADPSQVHYWLI 67

Query: 58  THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS------ 111
           TH H DH G    L   L    +   +              +  +      A        
Sbjct: 68  THKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEAC 127

Query: 112 ------DRWLQDGDTLL-LGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGR 164
                  R + DG+ L     H  +V    GHS  HV++ +        GD L       
Sbjct: 128 AWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAE 187

Query: 165 TDIL---HGDYQQLINSINNKILPLGDEISFVCGHGP 198
                    D +  + S+  ++  L   +  + GHG 
Sbjct: 188 GVWRPLVFDDMEAYLESL-ERLQRLPTLLQLIPGHGG 223


>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
           maltophilia [TaxId: 40324]}
          Length = 266

 Score = 79.7 bits (195), Expect = 2e-16
 Identities = 34/221 (15%), Positives = 74/221 (33%), Gaps = 17/221 (7%)

Query: 3   KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57
           +++ H  Q+         +   +   AV++D G       + D +++R      ++ I +
Sbjct: 24  QIADHTWQIGTEDLTALLVQTPD--GAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILL 81

Query: 58  THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD 117
           +H H DH G  A+LK      +     + A ++ +           +    A++DR + D
Sbjct: 82  SHAHADHAGPVAELKRRTGAKVAANA-ESAVLLARGGSDDLHFGDGITYPPANADRIVMD 140

Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDI-------LHG 170
           G+ + +G  +F      GH+PG   +   +          +  S+               
Sbjct: 141 GEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPH 200

Query: 171 DYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPF 211
             +    S    +  L  ++  +  H   S           
Sbjct: 201 LIEDYRRSF-ATVRALPCDV-LLTPHPGASNWDYAAGARAG 239


>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
           aeruginosa, IMP-1 [TaxId: 287]}
          Length = 220

 Score = 78.1 bits (191), Expect = 5e-16
 Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 22/185 (11%)

Query: 17  NCTFLFDEESLEAVVVDPGGDLDIIKDV---IQSRNFHVKQIWITHGHVDHVGGAAQLKE 73
           +   +      EA ++D        + +      R + +K    +H H D  GG   L  
Sbjct: 32  HGLVVLVNA--EAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNS 89

Query: 74  DLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC 133
                                    L           +       +  L+   I   +  
Sbjct: 90  R-----------SIPTYASELTNELL----KKDGKVQATNSFSGVNYWLVKNKIEVFYPG 134

Query: 134 PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFV 193
           PGH+P +V+    E      G  +    +G  ++   + +    S        G     V
Sbjct: 135 PGHTPDNVVVWLPERKILFGGCFIKPYGLG--NLGDANIEAWPKSAKLLKSKYGKAKLVV 192

Query: 194 CGHGP 198
             H  
Sbjct: 193 PSHSE 197


>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
           [TaxId: 1396]}
          Length = 221

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 41/203 (20%), Positives = 63/203 (31%), Gaps = 23/203 (11%)

Query: 17  NCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72
           N   L   +    V+VD   D      +I+ V +     V  + ITH H D +GG   LK
Sbjct: 36  NGLVLNTSK--GLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLK 93

Query: 73  EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH 132
           E     I        A +                        LQ    L  G    + F+
Sbjct: 94  ER---GIKAHSTALTAELA------------KKNGYEEPLGDLQTVTNLKFGNMKVETFY 138

Query: 133 C-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKILPLGDEI 190
              GH+  +++    + N    G  +  +S      +      +   SI N +    +  
Sbjct: 139 PGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNIN 198

Query: 191 SFVCGHGPNSTIGRERRLNPFLK 213
           + V GHG     G        LK
Sbjct: 199 AVVPGHGEVGDKGLLLHTLDLLK 221


>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
           fragilis [TaxId: 817]}
          Length = 230

 Score = 72.8 bits (177), Expect = 2e-14
 Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 23/209 (11%)

Query: 11  VTPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVG 66
                 N   + +    +A ++D   +      ++  V  S +  V      H H D +G
Sbjct: 30  WGMVPSNGMIVINNH--QAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIG 87

Query: 67  GAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTH 126
           G   L++                  +       + +         +    D  T+ L   
Sbjct: 88  GLGYLQK---------------KGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGM 132

Query: 127 IFKVFH-CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT-DILHGDYQQLINSINNKIL 184
             + ++   GH+  +++      N    G  L  +      +I   D      +++    
Sbjct: 133 PLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKA 192

Query: 185 PLGDEISFVCGHGPNSTIGRERRLNPFLK 213
                   V GHG              + 
Sbjct: 193 KFPSARYVVPGHGDYGGTELIEHTKQIVN 221


>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
           hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 260

 Score = 70.7 bits (172), Expect = 8e-14
 Identities = 47/251 (18%), Positives = 76/251 (30%), Gaps = 66/251 (26%)

Query: 7   HIVQVTPFKQNCTFL-FDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHV 65
            +  +     N  +L  D+E+ EA +VDP     ++ D  +     +  +  TH H DH 
Sbjct: 2   KVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVV-DAARKHGVKLTTVLTTHHHWDHA 60

Query: 66  GGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT 125
           GG  +L +  S   +    D    +                        +    TL +G+
Sbjct: 61  GGNEKLVKLESGLKVYGGDDRIGAL---------------------THKITHLSTLQVGS 99

Query: 126 HIFKVFHCPGHSPGHVIYV-----NFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN 180
              K    P H+ GH+ Y        E      GDTLF    G      G   ++  ++ 
Sbjct: 100 LNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLF--VAGCGKFYEGTADEMCKALL 157

Query: 181 NKILPLGDEISFVCGHGPN------------------------------------STIGR 204
             +  L  +    CGH                                       ST+  
Sbjct: 158 EVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAE 217

Query: 205 ERRLNPFLKSN 215
           E   NPF++  
Sbjct: 218 EFTYNPFMRVR 228


>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
           hydrophila, CphA [TaxId: 644]}
          Length = 228

 Score = 67.3 bits (163), Expect = 1e-12
 Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 13/189 (6%)

Query: 17  NCTFLFDEESLEAVVVDPGGDLDIIKDVI----QSRNFHVKQIWITHGHVDHVGGAAQLK 72
           N    F  +     VV      D  +++     +     V ++  T+ H D  GG A  K
Sbjct: 24  NSMVYFGAK--GVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWK 81

Query: 73  EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRW---LQDGDTLLLGTHIFK 129
                 ++   +    M     E        +             + DGD  L    +  
Sbjct: 82  SI-GAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRA 140

Query: 130 VFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDE 189
            +  P H+P  +     +    + G  + +  +G       D +    ++          
Sbjct: 141 FYAGPAHTPDGIFVYFPDEQVLYGGC-ILKEKLGNLS--FADVKAYPQTLERLKAMKLPI 197

Query: 190 ISFVCGHGP 198
            + + GH  
Sbjct: 198 KTVIGGHDS 206


>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium
           meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
          Length = 219

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 28/215 (13%), Positives = 52/215 (24%), Gaps = 23/215 (10%)

Query: 5   SFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQS----RNFHVKQIWITHG 60
           +++    T +  N  +L  ++    VV+D     D  K             V     TH 
Sbjct: 16  TYNTFNGTKYAANAVYLVTDK--GVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHS 73

Query: 61  HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120
           H D  GG     +             A         + L                 +  +
Sbjct: 74  HDDRAGGLEYFGK-----------IGAKTYSTKMTDSILAKENKPRAQ----YTFDNNKS 118

Query: 121 LLLGTHIFKVFHCPGHSPGHVIYVNFE-NNFAHLGDTLFRSSIGRTDILH-GDYQQLINS 178
             +G   F+V++         + V F        G  +  +       +          S
Sbjct: 119 FKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQS 178

Query: 179 INNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213
           ++N           V GH         +     + 
Sbjct: 179 VHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLIN 213


>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
           domain {Moorella thermoacetica [TaxId: 1525]}
          Length = 249

 Score = 58.4 bits (140), Expect = 4e-10
 Identities = 25/224 (11%), Positives = 57/224 (25%), Gaps = 43/224 (19%)

Query: 17  NCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQ 70
           N   + D++     +VD   +      +  +K +       +  + + H   DH G    
Sbjct: 37  NAYLIVDDK---TALVDTVYEPFKEELIAKLKQIKDPVK--LDYLVVNHTESDHAGAFPA 91

Query: 71  LKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKV 130
           + E      +   +     +               +    +   ++ G ++ LG      
Sbjct: 92  IMELCPDAHVLCTQRAFDSL-----------KAHYSHIDFNYTIVKTGTSVSLGKRSLTF 140

Query: 131 FHCP-GHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDI-------------------LHG 170
              P  H P  +     E       D   +                           +  
Sbjct: 141 IEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILM 200

Query: 171 DYQQLINSINNKILPLGDEISFVC-GHGPNSTIGRERRLNPFLK 213
            +  LI    ++I  +   I  +   HG        R +  + +
Sbjct: 201 PFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYAR 244


>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
           N-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 250

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 46/236 (19%)

Query: 6   FHIVQVTP--FKQNCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWI 57
           F  V   P     N   +        V++D          +D +  ++  +   +  I +
Sbjct: 28  FEAVWEIPEGISYNAYLVKLNG--ANVLIDGWKGNYAKEFIDALSKIVDPK--EITHIIV 83

Query: 58  THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD 117
            H   DH G      + +   +     +    +                        ++D
Sbjct: 84  NHTEPDHSGSLPATLKTIGHDVEIIASNFGKRL------------LEGFYGIKDVTVVKD 131

Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT------------ 165
           G+   +G   FK    P       +   + +      D      +               
Sbjct: 132 GEEREIGGKKFKFVMTPWLHWPDTMVT-YLDGILFSCDVGGGYLLPEILDDSNESVVERY 190

Query: 166 --------DILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213
                     + G Y+  I     K+  L  +   + GHG       +R LN ++ 
Sbjct: 191 LPHVTKYIVTVIGHYKNYILEGAEKLSSLKIKA-LLPGHGLIWKKDPQRLLNHYVS 245


>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 505

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 34/232 (14%), Positives = 63/232 (27%), Gaps = 45/232 (19%)

Query: 17  NCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFH-----VKQIWITHGHVDHVGGAAQL 71
           N TF+  +     +VVD        +   +  +       ++ +  +H H DH GG   L
Sbjct: 105 NITFIRGDSGW--IVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGL 162

Query: 72  KEDLSL-----TIIGPHKDDAAMMGKVDEQARLLSIR----------------------- 103
            E   +      II P     A + +       +  R                       
Sbjct: 163 VEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGK 222

Query: 104 -----MNARNASSDRWLQDGDTLLLGTHIFKVFHCPG-HSPGHVIYVNFENNFAHLGDTL 157
                  +  A +     +G+ L+L    F   + PG  SP  +           + + +
Sbjct: 223 GLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENV 282

Query: 158 FRSSIGRTDIL---HGDYQQLINSINNKILPLGDEISFVC-GHGPNSTIGRE 205
             +      +      D       IN  +   G +   +   H        E
Sbjct: 283 VGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMFAVHNWPRWGNAE 334


>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
           WBC-3 [TaxId: 165468]}
          Length = 294

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 39/223 (17%), Positives = 64/223 (28%), Gaps = 29/223 (13%)

Query: 13  PFKQNCTFLFDEESLEAVVVDPGG------DLDIIKDVIQSRNFH---VKQIWITHGHVD 63
           P + + T        + V+VD G        L  +   +++  +    V +I+ITH H D
Sbjct: 57  PLETSVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPD 116

Query: 64  HVGGAAQLKEDLSLTIIGPHKDDAAMM----------GKVDEQARLLSIRMNARNASSDR 113
           HVGG    ++      +       A               + +        +        
Sbjct: 117 HVGGLMVGEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAG 176

Query: 114 WLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFEN--NFAHLGDTLFRSSIGRTDI---- 167
             +            K     GH+PGH  YV        A LGD +  +++   D     
Sbjct: 177 KFKPFSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLILVAAVQFDDPSVTT 236

Query: 168 -LHGDYQQLINSINNKILPL--GDEISFVCGHGPNSTIGRERR 207
            L  D + +      K               H     IG  R 
Sbjct: 237 QLDSDSKSVAVER-KKAFADAAKGGYLIAASHLSFPGIGHIRA 278


>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
           {Thermotoga maritima [TaxId: 2336]}
          Length = 207

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 18/190 (9%)

Query: 16  QNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNFH---VKQIWITHGHVDHVGGAAQ 70
              T ++ E     +++DPG    +D +++           +  +  TH H+DH+  +  
Sbjct: 21  HFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVL 80

Query: 71  LKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKV 130
            +          +  +            ++    +   +S    +       L     KV
Sbjct: 81  FEN------ATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKV 134

Query: 131 FHCPGHSPGHVIYVNFENNFAHL---GDTLFRSSIGRTDILHGDYQQLINSINNKILPLG 187
           FH P H+  H+ ++    N   +   GD           I      Q+ N ++     +G
Sbjct: 135 FHTPWHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDR----VG 190

Query: 188 DEISFVCGHG 197
                V  H 
Sbjct: 191 RIDLLVFPHD 200


>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 183

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 30  VVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89
            + DP    +      + +++    ++++H H+DH      L   + L  +   K     
Sbjct: 10  DLYDPRLGYEYHG--AEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNS 67

Query: 90  MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGH--SPGHVIYVNFE 147
           + +  +     S             L   D + +G    ++            ++    +
Sbjct: 68  LNRKGDFLI-PSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPD 126

Query: 148 NNFAHLGDTLF 158
           +   + GD   
Sbjct: 127 HFITYTGDLRL 137


>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
           TTHA0252 {Thermus thermophilus [TaxId: 274]}
          Length = 431

 Score = 33.4 bits (75), Expect = 0.015
 Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 13/156 (8%)

Query: 17  NCTFLFDEESLEAVVVD----PGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQL- 71
           +   L        V++D     G +              V  + +TH H+DHVG   +L 
Sbjct: 15  SAHLLLAGGRR--VLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLF 72

Query: 72  KEDLSLTIIGPHKDDAAMMGKVDEQA-----RLLSIRMNARNASSDRWLQDGDTLLLGTH 126
           +E     +         M   +++                      R L+ G+ L LG  
Sbjct: 73  REGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGAL 132

Query: 127 IFKVFHCPGHSPGHVIYVNFEN-NFAHLGDTLFRSS 161
                          +    E     + GD   R  
Sbjct: 133 SLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREK 168


>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
           specificity factor subunit 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 451

 Score = 32.4 bits (72), Expect = 0.027
 Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 17  NCTFLFDEESLEAVVVDPG-----GDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQL 71
           +C  L  +     +++D G       +D +  +       +  + I+H H+DH G     
Sbjct: 18  SCIILEFKGRK--IMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWF 75

Query: 72  KEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVF 131
                L                     LLS  +   N S+D  L     L       +  
Sbjct: 76  -----LQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETI 130

Query: 132 HCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILH 169
           +         I     +    LG  +F   I    +L+
Sbjct: 131 NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLY 168


>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
           2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 514

 Score = 32.5 bits (73), Expect = 0.027
 Identities = 15/140 (10%), Positives = 40/140 (28%), Gaps = 25/140 (17%)

Query: 30  VVVDPGGD--LDIIKDVIQSRNFHVKQI---WITHGHVDHVGGAAQL------KEDLSLT 78
           +++DPG +      +  I+     + +I    ++   ++ +G  + L           + 
Sbjct: 27  LLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQ 86

Query: 79  IIGPH----------KDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD-GDTLLLGT-- 125
           +               D  A  G +           +   +            + L +  
Sbjct: 87  VYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRY 146

Query: 126 -HIFKVFHCPGHSPGHVIYV 144
             +  + +  G  PG  I+ 
Sbjct: 147 DGLTLLAYNAGVCPGGSIWC 166


>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
           {Pseudomonas putida [TaxId: 303]}
          Length = 304

 Score = 32.4 bits (72), Expect = 0.029
 Identities = 13/143 (9%), Positives = 35/143 (24%), Gaps = 9/143 (6%)

Query: 17  NCTFLFDEESLEAVVVDPGGD-------LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAA 69
             +    ++ +  ++ +   D          ++     R+  +  I +    +DH  G  
Sbjct: 39  QSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLL 98

Query: 70  QLKEDLSLTI--IGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127
            L+E     +        D      +       +  +       +          L    
Sbjct: 99  SLREGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTP 158

Query: 128 FKVFHCPGHSPGHVIYVNFENNF 150
           F +         H    +  +N 
Sbjct: 159 FPLRSAAPPYSPHRFDPHPGDNL 181


>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
           esterase Pce (LytD), N-terminal domain {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 305

 Score = 30.0 bits (66), Expect = 0.17
 Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 15/185 (8%)

Query: 39  DIIKDVIQSRNF-HVKQIWITHGHVDHVGGAAQLKEDLSL-TIIGPHKDDA------AMM 90
           D +   ++  +   +  I +TH H DH+G   +L     +  +      D+       + 
Sbjct: 60  DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 119

Query: 91  GKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH-CPGHSPGHVIYVNFENN 149
             +    ++L        +      Q       G    ++++          +   +++N
Sbjct: 120 DNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDN 179

Query: 150 FAHLGDTLFRSSIGRTDILHGD--YQQLINSINNKILPLGDEISFVCGHGPNSTIGRE-- 205
              L   +     G+   L GD             ++   D + F   H  N +  ++  
Sbjct: 180 SNSLISVV--KVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKFNHHHDTNKSNTKDFI 237

Query: 206 RRLNP 210
           + L+P
Sbjct: 238 KNLSP 242


>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 114

 Score = 28.4 bits (63), Expect = 0.43
 Identities = 11/55 (20%), Positives = 19/55 (34%)

Query: 37  DLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMG 91
            L+I   +  +       I   +G +      A+  E      IGP  +   +MG
Sbjct: 60  YLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114


>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 28.6 bits (62), Expect = 0.48
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 52  VKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN 108
            K +++THGHVDH+ G   +    +  +    K       + +      +  +   N
Sbjct: 41  FKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRAN 97


>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium
           cellulolyticum [TaxId: 1521]}
          Length = 431

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 137 SPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKIL---PLGDEISFV 193
           +PG + +++      +         +            L     + IL   P    +S++
Sbjct: 294 TPGGLKWLSNWGVLRYAAAESMVMLVYCKQNPDQSLLDLAKKQVDYILGDNPAN--MSYI 351

Query: 194 CGHGPNS 200
            G+G N 
Sbjct: 352 IGYGSNW 358


>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 107

 Score = 25.8 bits (56), Expect = 2.8
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 102 IRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP 134
             ++ +  S    LQ G  L  GT     F  P
Sbjct: 75  TYVDGQRISETTMLQSGMRLQFGTSHVFKFVDP 107


>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica
           [TaxId: 671]}
          Length = 291

 Score = 26.0 bits (56), Expect = 2.8
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 6/147 (4%)

Query: 54  QIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLS-IRMNARNASSD 112
           +  +  GH+D   G+   ++ ++        DDA+ +  V E  R+LS      + + + 
Sbjct: 90  EWIVIGGHLDSTIGSHTNEQSVAPGAD----DDASGIAAVTEVIRVLSENNFQPKRSIAF 145

Query: 113 RWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDY 172
                 +  L G+      +                N+      +   +           
Sbjct: 146 MAYAAEEVGLRGSQDLANQYKSEGKNVVSALQLDMTNYKGSAQDVVFITDYTDSNFTQYL 205

Query: 173 QQLINSINNKILPLGDEISFVCG-HGP 198
            QL++     +    D   + C  H  
Sbjct: 206 TQLMDEYLPSLTYGFDTCGYACSDHAS 232


>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate
           synthase {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 25.8 bits (57), Expect = 3.1
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 2   SKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDII----KDVIQ---SRNFHVKQ 54
            K+ F +       +N T    + +   V+V  G  LD I     D I+   +    V Q
Sbjct: 60  KKVGFDLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQ 119

Query: 55  IWITHG 60
                 
Sbjct: 120 ALKEAK 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,474
Number of extensions: 38642
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 42
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)