BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] (216 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 445 bits (1145), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MSKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHG 60 MSKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHG Sbjct: 1 MSKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHG 60 Query: 61 HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120 HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT Sbjct: 61 HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120 Query: 121 LLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN 180 LLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN Sbjct: 121 LLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN 180 Query: 181 NKILPLGDEISFVCGHGPNSTIGRERRLNPFLKSNI 216 NKILPLGDEISFVCGHGPNSTIGRERRLNPFLKSNI Sbjct: 181 NKILPLGDEISFVCGHGPNSTIGRERRLNPFLKSNI 216 >gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62] Length = 256 Score = 73.6 bits (179), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 22/188 (11%) Query: 9 VQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGA 68 + ++ + N L D II +++ + + + I+ TH H+DH Sbjct: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65 Query: 69 AQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIF 128 LK+ + TI GP ++E +++ I D L DGDT G+H Sbjct: 66 LNLKKFFNCTIFGP----------LEESSKIPGI---------DHGLSDGDTFDFGSHPI 106 Query: 129 KVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGD 188 K+ PGH+ GH+ Y ++F +GDTLF GR I Y ++ S+ KI D Sbjct: 107 KIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR--IFEDSYAEMFESL-EKIKSFSD 163 Query: 189 EISFVCGH 196 + GH Sbjct: 164 KTHIYFGH 171 >gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 435 Score = 26.2 bits (56), Expect = 0.52, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 155 DTLFRSSIGR-TDILHGDYQQLINSINNKILPLGDEISFVCGHG 197 DT F + R TDIL D QL+ S+ + D ++ HG Sbjct: 102 DTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHG 145 >gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 25.8 bits (55), Expect = 0.67, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 29 AVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72 V+VD G D + V++ + + + TH H DH+ G L+ Sbjct: 55 TVIVDTGPDFYM--QVLREQVLSIDAVLYTHPHADHIHGIDGLR 96 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 86 DAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLL 122 DAAM KVD+ ++ + N SS W G LL Sbjct: 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 >gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 182 Score = 23.9 bits (50), Expect = 2.2, Method: Compositional matrix adjust. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 29/131 (22%) Query: 57 ITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQ 116 IT+GH+D + A EDL +++I N+ +Q Sbjct: 14 ITNGHMDIIIQALSFVEDL-----------------------VIAIGCNSVKTKGFLSIQ 50 Query: 117 DGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSI--GRTDILHGDYQQ 174 + L+ + +FH S V ++FE +L + I G D+ DY+ Sbjct: 51 ERSELIKQS----IFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEM 106 Query: 175 LINSINNKILP 185 + S+N + P Sbjct: 107 RMTSVNRCLCP 117 >gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 559 Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDV--IQSRNFHVKQIWITHGHVDHVGG 67 +C F ++ L PG DL + D+ I ++ I+ITH H DH G Sbjct: 38 DCGVSFPKDDL------PGVDL-VFPDITFIMKERKNLMAIFITHAHEDHYGA 83 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 23.5 bits (49), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 16/86 (18%) Query: 29 AVVVDPGGDLDIIKDVIQSRNF----------HVKQIWIT-HGH-----VDHVGGAAQLK 72 AV+ +P DLD + ++I+ +F +K + T G V H+ + + Sbjct: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQAR 98 E + +T I + AAM+ K+ E R Sbjct: 264 EQIVVTEIPYQVNKAAMLEKIAELVR 289 >gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 285 Score = 23.1 bits (48), Expect = 3.7, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 79 IIGPHKDDAAMMGKVDEQAR 98 I GPH A ++ KVDE+ R Sbjct: 253 IAGPHLYCAVIIKKVDEKTR 272 >gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 23.1 bits (48), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 4 LSFHIVQVTPFKQNCTFLFDEE-SLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHV 62 LS + +P+ L D+E L +VV+D GG I + + ++ I I HV Sbjct: 205 LSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHV 264 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 21.9 bits (45), Expect = 9.6, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 169 HGDYQQLINSINNKILPLGDEISF 192 HG Q++I++ + + L LGD +F Sbjct: 239 HGTVQEIIDNQDVRRLYLGDRFAF 262 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.140 0.427 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 146,598 Number of Sequences: 1233 Number of extensions: 6023 Number of successful extensions: 24 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 14 length of query: 216 length of database: 328,796 effective HSP length: 70 effective length of query: 146 effective length of database: 242,486 effective search space: 35402956 effective search space used: 35402956 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 36 (18.5 bits)