BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780758|ref|YP_003065171.1| hypothetical protein
CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 216

 Score =  445 bits (1145), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MSKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHG 60
           MSKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHG
Sbjct: 1   MSKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHG 60

Query: 61  HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120
           HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT
Sbjct: 61  HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120

Query: 121 LLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN 180
           LLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN
Sbjct: 121 LLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSIN 180

Query: 181 NKILPLGDEISFVCGHGPNSTIGRERRLNPFLKSNI 216
           NKILPLGDEISFVCGHGPNSTIGRERRLNPFLKSNI
Sbjct: 181 NKILPLGDEISFVCGHGPNSTIGRERRLNPFLKSNI 216


>gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 256

 Score = 73.6 bits (179), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 22/188 (11%)

Query: 9   VQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGA 68
           + ++ +  N   L               D  II  +++ + + +  I+ TH H+DH    
Sbjct: 6   IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65

Query: 69  AQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIF 128
             LK+  + TI GP          ++E +++  I         D  L DGDT   G+H  
Sbjct: 66  LNLKKFFNCTIFGP----------LEESSKIPGI---------DHGLSDGDTFDFGSHPI 106

Query: 129 KVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGD 188
           K+   PGH+ GH+ Y    ++F  +GDTLF    GR  I    Y ++  S+  KI    D
Sbjct: 107 KIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR--IFEDSYAEMFESL-EKIKSFSD 163

Query: 189 EISFVCGH 196
           +     GH
Sbjct: 164 KTHIYFGH 171


>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 435

 Score = 26.2 bits (56), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 155 DTLFRSSIGR-TDILHGDYQQLINSINNKILPLGDEISFVCGHG 197
           DT F   + R TDIL  D  QL+ S+  +     D ++    HG
Sbjct: 102 DTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHG 145


>gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 271

 Score = 25.8 bits (55), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 29 AVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72
           V+VD G D  +   V++ +   +  +  TH H DH+ G   L+
Sbjct: 55 TVIVDTGPDFYM--QVLREQVLSIDAVLYTHPHADHIHGIDGLR 96


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 25.0 bits (53), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 86  DAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLL 122
           DAAM  KVD+   ++   +   N SS  W   G  LL
Sbjct: 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794


>gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 182

 Score = 23.9 bits (50), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 29/131 (22%)

Query: 57  ITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQ 116
           IT+GH+D +  A    EDL                       +++I  N+        +Q
Sbjct: 14  ITNGHMDIIIQALSFVEDL-----------------------VIAIGCNSVKTKGFLSIQ 50

Query: 117 DGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSI--GRTDILHGDYQQ 174
           +   L+  +    +FH    S   V  ++FE    +L   +    I  G  D+   DY+ 
Sbjct: 51  ERSELIKQS----IFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEM 106

Query: 175 LINSINNKILP 185
            + S+N  + P
Sbjct: 107 RMTSVNRCLCP 117


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 559

 Score = 23.9 bits (50), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDV--IQSRNFHVKQIWITHGHVDHVGG 67
          +C   F ++ L      PG DL +  D+  I     ++  I+ITH H DH G 
Sbjct: 38 DCGVSFPKDDL------PGVDL-VFPDITFIMKERKNLMAIFITHAHEDHYGA 83


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 23.5 bits (49), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 16/86 (18%)

Query: 29  AVVVDPGGDLDIIKDVIQSRNF----------HVKQIWIT-HGH-----VDHVGGAAQLK 72
           AV+ +P  DLD + ++I+  +F           +K  + T  G      V H+   +  +
Sbjct: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263

Query: 73  EDLSLTIIGPHKDDAAMMGKVDEQAR 98
           E + +T I    + AAM+ K+ E  R
Sbjct: 264 EQIVVTEIPYQVNKAAMLEKIAELVR 289


>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 285

 Score = 23.1 bits (48), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 79  IIGPHKDDAAMMGKVDEQAR 98
           I GPH   A ++ KVDE+ R
Sbjct: 253 IAGPHLYCAVIIKKVDEKTR 272


>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 440

 Score = 23.1 bits (48), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 4   LSFHIVQVTPFKQNCTFLFDEE-SLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHV 62
           LS   +  +P+      L D+E  L +VV+D GG    I    + +  ++  I I   HV
Sbjct: 205 LSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHV 264


>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 262

 Score = 21.9 bits (45), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 169 HGDYQQLINSINNKILPLGDEISF 192
           HG  Q++I++ + + L LGD  +F
Sbjct: 239 HGTVQEIIDNQDVRRLYLGDRFAF 262


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,598
Number of Sequences: 1233
Number of extensions: 6023
Number of successful extensions: 24
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 14
length of query: 216
length of database: 328,796
effective HSP length: 70
effective length of query: 146
effective length of database: 242,486
effective search space: 35402956
effective search space used: 35402956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)