Query gi|254780759|ref|YP_003065172.1| hypothetical protein CLIBASIA_03230 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 13:58:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780759.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ulv_A Glucodextranase; GH fa 19.9 60 0.0018 13.8 3.2 29 105-133 53-81 (86)
2 >2q1f_A Chondroitinase; alpha 13.0 69 0.002 13.4 0.8 45 6-50 1-53 (190)
3 >3bg1_B Nucleoporin NUP145; NP 9.4 1.2E+02 0.0036 12.1 2.0 27 2-28 40-67 (96)
4 >2ox1_A 3-dehydroquinate dehyd 9.3 1.2E+02 0.0034 12.2 0.9 30 120-150 160-189 (196)
5 >2cav_A Protein (canavalin); v 9.2 78 0.0023 13.1 0.0 20 3-22 7-28 (245)
6 >1vjj_A Protein-glutamine glut 8.9 1.3E+02 0.0038 12.0 1.5 39 118-156 84-122 (140)
7 >2wy3_B UL16, uncharacterized 7.9 86 0.0026 12.9 -0.2 19 137-158 105-123 (158)
8 >3jro_A Fusion protein of prot 7.8 1.2E+02 0.0034 12.2 0.4 26 2-27 32-58 (88)
9 >2blf_A SORA, sulfite\:cytochr 7.6 1.5E+02 0.0043 11.6 1.8 26 105-130 65-90 (113)
10 >2yrl_A KIAA1837 protein; PKD 7.2 1.5E+02 0.0045 11.5 2.7 84 25-108 10-93 (102)
No 1
>>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} (A:688-773)
Probab=19.94 E-value=60 Score=13.78 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.8
Q ss_pred EECCCCCCCEEEEEEECCCCCCCCCEEEE
Q ss_conf 11146677415776311467787404899
Q gi|254780759|r 105 EFSVPKNDEKYTISACASDDKGNKSTLCV 133 (162)
Q Consensus 105 efsvpkndekytisacasddkgnkstlcv 133 (162)
.+.++-.+-+|+|.+-|.|..||.++.-+
T Consensus 53 ~~~v~l~~G~~ti~v~AtD~aGN~~~~~~ 81 (86)
T 1ulv_A 53 SLDVALTGAKNKVTVAAVAADGGTAVEDR 81 (86)
T ss_dssp EEEEECCSSEEEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCCCEEEEEEECCCCCCEEEEE
T ss_conf 99821678874799999547886167777
No 2
>>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} (A:1-190)
Probab=12.99 E-value=69 Score=13.44 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHH--HH--HHHC---CCCCCCEEEEEEEE-ECCCCCCC
Q ss_conf 56999984105677776--65--4202---21221002567764-02555651
Q gi|254780759|r 6 AMLISFLASGCVAHALL--TK--KIES---DTDSRHEKATISLS-AHDKEGSK 50 (162)
Q Consensus 6 amlisflasgcvahall--tk--kies---dtdsrhekatisls-ahdkegsk 50 (162)
.||.+||.++-..-.+. +. -.|. -.+---++.++++| .|-|+|..
T Consensus 1 ~~ll~~l~~~~~~aq~v~~~~~~~FE~~~~~~~~ts~~~~lsiS~~hyK~G~~ 53 (190)
T 2q1f_A 1 XLILSFLCPAFLNAQIVTDERXFSFEEPQLPACITGVQSQLGISGAHYKDGKH 53 (190)
T ss_dssp -------------CCSCCCTTEECCCSSSCCTTEEEEEEEEEEESSCCSSTTC
T ss_pred CEEEEEEHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCEEEECHHHHHCCCC
T ss_conf 94666420133125442354157225887866250589648657666414653
No 3
>>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B (B:166-261)
Probab=9.40 E-value=1.2e+02 Score=12.07 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=19.4
Q ss_pred CEEHHHHHHHHHHH-HHHHHHHHHHHHC
Q ss_conf 51025699998410-5677776654202
Q gi|254780759|r 2 NFRIAMLISFLASG-CVAHALLTKKIES 28 (162)
Q Consensus 2 nfriamlisflasg-cvahalltkkies 28 (162)
|+|.|+||+-+.|| -+...++.+.++.
T Consensus 40 d~rLA~Llsq~gs~~~~vr~~~~~QL~~ 67 (96)
T 3bg1_B 40 NGHLSVLISYLGSNDPRIRDLAELQLQK 67 (96)
T ss_dssp CHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9479999998338987899999999999
No 4
>>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} (A:)
Probab=9.25 E-value=1.2e+02 Score=12.21 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=17.3
Q ss_pred ECCCCCCCCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 1146778740489987778898742320111
Q gi|254780759|r 120 CASDDKGNKSTLCVECPSPSTPGQYDLNHCA 150 (162)
Q Consensus 120 casddkgnkstlcvecpspstpgqydlnhca 150 (162)
+.+.--|..-|.| --+.|+.|||.++....
T Consensus 160 i~~~~lGs~~ty~-~~~~~sApGQ~~~~el~ 189 (196)
T 2ox1_A 160 VLAAYLGSPFIYC-YVGSPKAPGQISLDDAR 189 (196)
T ss_dssp HHHHHTTCSEEEE-ESSSCSSTTCCBHHHHH
T ss_pred HHHHHHCCCEEEC-CCCCCCCCCCCCHHHHH
T ss_conf 9899769806962-47989899998899999
No 5
>>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, plant protein; 2.00A {Canavalia ensiformis} (A:1-54,A:255-445)
Probab=9.23 E-value=78 Score=13.14 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=14.3
Q ss_pred EEHHHH--HHHHHHHHHHHHHH
Q ss_conf 102569--99984105677776
Q gi|254780759|r 3 FRIAML--ISFLASGCVAHALL 22 (162)
Q Consensus 3 friaml--isflasgcvahall 22 (162)
|++-|| |.||||-||.-+..
T Consensus 7 ~~l~~llgi~flas~~vs~~~~ 28 (245)
T 2cav_A 7 FPLWLLLGVVLLASVSASFAHS 28 (245)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6999999999999866651247
No 6
>>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} (A:1-140)
Probab=8.86 E-value=1.3e+02 Score=11.95 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=30.4
Q ss_pred EEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 631146778740489987778898742320111001432
Q gi|254780759|r 118 SACASDDKGNKSTLCVECPSPSTPGQYDLNHCAECENTT 156 (162)
Q Consensus 118 sacasddkgnkstlcvecpspstpgqydlnhcaecentt 156 (162)
+|....-.||.-++.|-.|.-.--|+|.|.-...+++..
T Consensus 84 ~a~~~~~~~~~v~v~V~sp~~A~VG~y~L~v~~~s~~~~ 122 (140)
T 1vjj_A 84 SAVLQASNGNTLTISISSPASAPIGRYTMALQIFSQGGI 122 (140)
T ss_dssp EEEEEEEETTEEEEEEECCTTCCCEEEEEEEEEEETTEE
T ss_pred EEEEEECCCCEEEEEEECCCCCCEEEEEEEEEEEECCCC
T ss_conf 699994489989999947999836789999999708974
No 7
>>2wy3_B UL16, uncharacterized protein UL16; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Human herpesvirus 5 strain AD169} (B:)
Probab=7.89 E-value=86 Score=12.90 Aligned_cols=19 Identities=53% Similarity=0.973 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 7889874232011100143224
Q gi|254780759|r 137 SPSTPGQYDLNHCAECENTTSK 158 (162)
Q Consensus 137 spstpgqydlnhcaecenttsk 158 (162)
..-|.|.|| |-.|+|.|.+
T Consensus 105 ~n~t~gryd---c~rc~ngt~~ 123 (158)
T 2wy3_B 105 TNLTVGRYD---CLRCENGTTK 123 (158)
T ss_dssp STTTCEEEE---EEEEETTEEE
T ss_pred CCCCCCCEE---EEEECCCCHH
T ss_conf 045443124---6885498252
No 8
>>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} (A:483-570)
Probab=7.76 E-value=1.2e+02 Score=12.19 Aligned_cols=26 Identities=27% Similarity=0.361 Sum_probs=17.7
Q ss_pred CEEHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 51025699998410-567777665420
Q gi|254780759|r 2 NFRIAMLISFLASG-CVAHALLTKKIE 27 (162)
Q Consensus 2 nfriamlisflasg-cvahalltkkie 27 (162)
|||.|+||+-+.|| -+...++...++
T Consensus 32 d~rLA~Llsq~gs~~~~vr~~~~~QL~ 58 (88)
T 3jro_A 32 NGHLSVLISYLGSNDPRIRDLAELQLQ 58 (88)
T ss_dssp CCHHHHHGGGCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 955899999743898899999999999
No 9
>>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A* (A:261-373)
Probab=7.59 E-value=1.5e+02 Score=11.63 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=20.8
Q ss_pred EECCCCCCCEEEEEEECCCCCCCCCE
Q ss_conf 11146677415776311467787404
Q gi|254780759|r 105 EFSVPKNDEKYTISACASDDKGNKST 130 (162)
Q Consensus 105 efsvpkndekytisacasddkgnkst 130 (162)
+|.++--...|+|.+.|-|..||-..
T Consensus 65 ~~~~~~~~G~~~i~vRA~D~~G~~QP 90 (113)
T 2blf_A 65 KAVLPLTKGDHVLMCRATNARGETQP 90 (113)
T ss_dssp EEEEEECSEEEEEEEEEEETTSCCCC
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCC
T ss_conf 99878589929999989969888886
No 10
>>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=7.19 E-value=1.5e+02 Score=11.52 Aligned_cols=84 Identities=7% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHCCCCCCCEEEEEEEEECCCCCCCEEECCEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEECC
Q ss_conf 42022122100256776402555651010111114667630447887764422211000012576540255555101011
Q gi|254780759|r 25 KIESDTDSRHEKATISLSAHDKEGSKHTMNAEFSVPKNDEKYTISSLTKKIESDTDFRREKATISLSAHDKEGSKHTMNA 104 (162)
Q Consensus 25 kiesdtdsrhekatislsahdkegskhtmnaefsvpkndekytissltkkiesdtdfrrekatislsahdkegskhtmna 104 (162)
.|.++.....+..++.|++..-.-......-++........-.+...+...-.-+.-+-.-.+|.|.+-|..|...+...
T Consensus 10 ~~~~~~~~~~~~~~v~~~~~~sD~dg~~lt~~w~~~~~~~~~~~~~~~~~~~t~t~~~~G~y~itltVtD~~G~t~~~t~ 89 (102)
T 2yrl_A 10 DAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQSQSSV 89 (102)
T ss_dssp CCCSCEEEETTCCEEEEECCTTCSSSCBCCCCEEEEESCTTCEEESTTSSEEEEESCCSSEEEEEEEEEBTTCCEEEEEE
T ss_pred ECCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCCEEECCCCCCEEEEECCCCEEEEEEEEEEECCCCEEEEEE
T ss_conf 85899698468998999837147999807999996369960476037766589964798689999999959999498799
Q ss_pred EECC
Q ss_conf 1114
Q gi|254780759|r 105 EFSV 108 (162)
Q Consensus 105 efsv 108 (162)
.+.|
T Consensus 90 ~itV 93 (102)
T 2yrl_A 90 NVIV 93 (102)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
Done!