RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780759|ref|YP_003065172.1| hypothetical protein
CLIBASIA_03230 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)



>gnl|CDD|35467 KOG0246, KOG0246, KOG0246, Kinesin-like protein [Cytoskeleton].
          Length = 676

 Score = 29.3 bits (65), Expect = 0.51
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 61  KNDE--KYTISSLTKKIESDTDFRREKATISLSAHDKEGSKHTMNAEFSVPKNDEKYTIS 118
            N+   ++T   L K I     F    AT         G  +TM  +FS    D    I 
Sbjct: 271 SNELVYRFTAKPLVKTI-----FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIY 325

Query: 119 ACASDD 124
           A A+ D
Sbjct: 326 ALAARD 331


>gnl|CDD|32239 COG2056, COG2056, Predicted permease [General function prediction
          only].
          Length = 444

 Score = 28.3 bits (63), Expect = 0.99
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1  MNFRIAMLISFLASGCVAHALLTKKIESDTDSRHEKATISLS 42
          +N  +A++IS L +G V    LT+ I +        A ++LS
Sbjct: 19 VNVVLALIISALVAGLVGGLGLTETINAFISGLGGNANVALS 60


>gnl|CDD|38719 KOG3509, KOG3509, KOG3509, Basement membrane-specific heparan
           sulfate proteoglycan (HSPG) core protein
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 964

 Score = 25.4 bits (55), Expect = 6.8
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 77  SDTDFRREKATISLSAHDKEGSKHTMNAEFSVPKN-----DEKYTISACASDDKGNKSTL 131
           +DT     K+T+S      E S   +                +     C     G     
Sbjct: 674 ADTTTVLIKSTVSTDCTPSECSSANLEGALCYGGGKTDIIAAEVEQCQCPKGLVGTSCED 733

Query: 132 CVECPSPSTPGQYDLNHCAECENTTSKGLC 161
           C E  + ST G      C +CE  +    C
Sbjct: 734 CAEGYTLSTTGGLYPGLCEDCECNSHISQC 763


>gnl|CDD|37682 KOG2471, KOG2471, KOG2471, TPR repeat-containing protein [General
           function prediction only].
          Length = 696

 Score = 25.1 bits (54), Expect = 9.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 8   LISFLASGCVAHALLTKKIESDTDSRHEKATISLSAHDKEGS 49
           ++S+  +GC  H++L K++E+ T        +S     K+G+
Sbjct: 59  VVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGT 100


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.310    0.124    0.354 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,655,889
Number of extensions: 69782
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 10
Length of query: 162
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,405,363
Effective search space: 334807588
Effective search space used: 334807588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)