RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780759|ref|YP_003065172.1| hypothetical protein
CLIBASIA_03230 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)



>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 30.7 bits (69), Expect = 0.16
 Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 7/38 (18%)

Query: 122 SDDKG---NKSTLCVECPSPSTPGQYDLNH----CAEC 152
           +  +G   N    C EC           +     CA C
Sbjct: 11  AGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALC 48


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.4 bits (67), Expect = 0.21
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 16/42 (38%)

Query: 64  EKYTISSLTKKIESDTDFRREKATISLSAHDKEGS---KHTM 102
           EK    +L KK++         A++ L A D   +   K TM
Sbjct: 18  EK---QAL-KKLQ---------ASLKLYADDSAPALAIKATM 46



 Score = 30.0 bits (66), Expect = 0.28
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 14/38 (36%)

Query: 19 HALLTKKIESDTDSRHEKATISLSAHDKEGS---KHTM 53
           AL  KK++         A++ L A D   +   K TM
Sbjct: 20 QAL--KKLQ---------ASLKLYADDSAPALAIKATM 46


>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
           megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
           PDB: 2vz9_A*
          Length = 2512

 Score = 27.0 bits (59), Expect = 2.2
 Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 3/48 (6%)

Query: 4   RIAMLISFLASGCVAHALLTKKIESDTDSRHEKAT---ISLSAHDKEG 48
               + SF   G   H +L              A    +  S    E 
Sbjct: 386 GNVGINSFGFGGSNVHVILQPNSRPAPPPAQHAALPRLLQASGRTLEA 433


>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease,
           hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP:
           b.66.1.1 PDB: 1rtg_A
          Length = 218

 Score = 26.0 bits (57), Expect = 4.4
 Identities = 8/72 (11%), Positives = 20/72 (27%), Gaps = 11/72 (15%)

Query: 61  KNDEKYTISSLTKKIESDTDFRREKATISLSAHDKEGSKHTMNAEFSVPKNDEKYTISAC 120
             D+ +  + + KK++         A               ++A   +      Y     
Sbjct: 142 AGDKFWRYNEVKKKMDPGFPKLIADAW--------NAIPDNLDAVVDLQGGGHSYFFKGA 193

Query: 121 AS---DDKGNKS 129
                +++  KS
Sbjct: 194 YYLKLENQSLKS 205


>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG,
           structural genomics, PSI-2, protein structure
           initiative; 2.40A {Bacillus subtilis}
          Length = 159

 Score = 25.7 bits (56), Expect = 5.5
 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 63  DEKYTISSLTKKIESDTDFRREKATISLSAHDKE--------GSKHTMNAEFSVPKNDEK 114
           ++  + + +   +  D + +  +   S+    +         G K T    + +PK ++K
Sbjct: 60  EDSISYNFIGFDLR-DKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYVIPKGEQK 118


>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell
           cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1
           c.55.4.2 d.79.3.2
          Length = 347

 Score = 24.9 bits (54), Expect = 8.0
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 24  KKIESD--TDSRHEKATISLSAHDKEGSKHTMNAEFSVPKNDEKYTISSLTKKIESDTDF 81
           +KIE     +      T+     D +G   ++        +  K         ++  TD 
Sbjct: 68  EKIEFQDFDNRLRILGTVIEGPEDTKGKHQSITVTVDSEISITKEWDDQHIDLLKEATDE 127

Query: 82  RREKATISLSAHDKEGSKHTM 102
           +      +++  + E     +
Sbjct: 128 KYVTVYTAVAMDEDEAQIFLI 148


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.310    0.124    0.354 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,166,881
Number of extensions: 45969
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 22
Length of query: 162
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 77
Effective length of database: 3,632,490
Effective search space: 279701730
Effective search space used: 279701730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.9 bits)