HHsearch alignment for GI: 254780760 and conserved domain: pfam01300
>pfam01300 Sua5_yciO_yrdC yrdC domain. This domain has been shown to preferentially bind to dsRNA. The domain is found in SUA5 as well as HypF and YrdC.
Probab=100.00 E-value=0 Score=371.46 Aligned_cols=176 Identities=40% Similarity=0.635 Sum_probs=165.6
Q ss_pred HHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH-CCCHHHHHHHHCCCCCEEEE
Q ss_conf 99975985999077800040279999999999997088810654999679899776420-05204689985058871886
Q gi|254780760|r 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLV 95 (330)
Q Consensus 17 ~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~-~~~~~~~l~~~fwPGplT~i 95 (330)
T Consensus 1 e~L~~G~vi~~PTdtvYgl~~~a~~~~Av~ki~~iK~R~~~kpl~ll~~s~~~~~~~~~~~~~~~~~l~~~~wPGPlT~i 80 (178)
T pfam01300 1 EALRQGGIVAYPTDTVYGLGCDATNEEAVERLREIKGRPRDKPLAVMVADLEQLKEYADEVEEAALKLAERFWPGPITLI 80 (178)
T ss_pred CHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCEEEE
T ss_conf 91433988999779740488817998999999997089877883401587999998730156999999972589986998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 146787811655544457633224156-6766642014212123433348543301777766440655421127664566
Q gi|254780760|r 96 LDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 (330)
Q Consensus 96 l~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i~~ildgg~~~~ 174 (330)
T Consensus 81 ~~~~-~~~~~~~~~~~~~~igvRvp~~~~~~~L~~~~g~Pl~~TSAN~sG~~~~~~~~ei~-~~~~~~vd~i~d~g~~~~ 158 (178)
T pfam01300 81 LPAS-KSKLPKLVTPGLGTVGVRLPDHPLARLLLEALGEPLVATSANLSGEPSATDAEEVL-EELGGIVDLILDGGRIPV 158 (178)
T ss_pred ECCC-CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHH-HHHCCCCEEEEECCCCCC
T ss_conf 4266-66665202799983358604779999999986333288234679998989999999-983787619997998789
Q ss_pred CCCCEEEEEECCCCEEEEECC
Q ss_conf 767306996269824344248
Q gi|254780760|r 175 GLESTIVNVQCEKKVRILRPG 195 (330)
Q Consensus 175 GieSTiid~~~~~~~~IlR~G 195 (330)
T Consensus 159 ~~~STIvd~~~-~~~~ilR~G 178 (178)
T pfam01300 159 GVDSTVVDLTD-GPPEILRRG 178 (178)
T ss_pred CCCCEEEEEEC-CCEEEECCC
T ss_conf 99981499589-914897359