Query gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 330
No_of_seqs 200 out of 2688
Neff 6.3
Searched_HMMs 33803
Date Wed Jun 1 14:42:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780760.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2eqa_A Hypothetical protein S 100.0 0 0 378.1 18.1 201 7-211 12-214 (225)
2 >1k7j_A Protein YCIO, protein 100.0 0 0 373.7 16.6 192 7-202 12-205 (206)
3 >1hru_A YRDC gene product; pro 100.0 0 0 358.6 14.5 179 8-193 6-188 (188)
4 >2eqa_A Hypothetical protein S 99.9 9.3E-26 2.8E-30 186.9 9.9 102 220-323 2-114 (127)
5 >2yv4_A Hypothetical protein P 99.9 2.2E-26 6.4E-31 191.0 3.4 102 219-323 1-102 (105)
6 >1jcu_A Conserved protein MTH1 99.8 1.1E-19 3.3E-24 147.4 8.9 102 1-172 1-106 (106)
7 >1jcu_A Conserved protein MTH1 99.8 4E-20 1.2E-24 150.3 3.4 94 55-202 1-94 (102)
8 >1wzu_A Quinolinate synthetase 48.0 15 0.00044 17.1 2.7 57 15-74 64-120 (210)
9 >1ucs_A Antifreeze peptide RD1 47.5 18 0.00052 16.6 3.0 44 179-226 15-60 (64)
10 >1ops_A Type III AFP, type III 44.8 16 0.00047 16.9 2.5 37 179-218 14-52 (64)
11 >1wvo_A Sialic acid synthase; 44.3 12 0.00035 17.7 1.7 32 179-213 19-52 (79)
12 >1rmg_A Rgase A, rhamnogalactu 44.0 22 0.00064 16.0 3.1 27 6-32 34-60 (422)
13 >1c89_A RD3, antifreeze protei 43.9 17 0.00049 16.8 2.4 37 179-218 15-53 (64)
14 >1msi_A Type III antifreeze pr 38.9 23 0.00067 15.9 2.5 30 188-217 22-53 (70)
15 >1vli_A Spore coat polysacchar 34.7 30 0.00089 15.1 2.6 34 179-215 28-66 (85)
16 >1dqu_A Isocitrate lyase; beta 33.3 16 0.00048 16.8 1.0 44 228-272 235-279 (390)
17 >1bhe_A PEHA, polygalacturonas 31.8 25 0.00074 15.6 1.7 28 6-33 23-50 (376)
18 >1c89_A RD3, antifreeze protei 29.9 29 0.00085 15.2 1.8 35 179-216 21-57 (70)
19 >2wqp_A Polysialic acid capsul 29.7 36 0.0011 14.6 2.8 36 179-217 27-64 (73)
20 >2uvf_A Exopolygalacturonase; 29.6 28 0.00082 15.3 1.7 30 6-36 17-46 (455)
21 >2ef0_A Ornithine carbamoyltra 26.8 40 0.0012 14.3 2.1 125 36-172 14-160 (182)
22 >2dt8_A DEGV family protein; f 23.6 46 0.0014 13.9 2.4 74 91-173 2-81 (114)
23 >1u6l_A Hypothetical protein; 21.5 51 0.0015 13.6 3.6 31 4-34 10-41 (73)
24 >3gd5_A Otcase, ornithine carb 20.3 51 0.0015 13.6 1.6 125 35-171 17-162 (195)
No 1
>>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} (A:1-225)
Probab=100.00 E-value=0 Score=378.11 Aligned_cols=201 Identities=34% Similarity=0.563 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHC-CCHHHHHHH
Q ss_conf 9999999999999759859990778000402799999999999970888106549996798997764200-520468998
Q gi|254780760|r 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV-DPLSLHLAK 85 (330)
Q Consensus 7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~-~~~~~~l~~ 85 (330)
.+.+.+++|+++|++|++|++||||||||+|+++|++||+|||++|+||.+|||+++++|++++..|+.. ++.++++++
T Consensus 12 ~~~~~i~~a~~~L~~Ggvi~~PTdtvYgl~~~~~~~~Av~ri~~~K~R~~~Kpl~ll~~~~~~~~~~~~~~~~~~~~l~~ 91 (225)
T 2eqa_A 12 PEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKVLEIAQ 91 (225)
T ss_dssp CCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999996799899987870046875999999999999729998898799985999999886566899999887
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 5058871886146787811655544457633224156-676664201421212343334854330177776644065542
Q gi|254780760|r 86 LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 (330)
Q Consensus 86 ~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i~ 164 (330)
+|||||+|+|+|.+ ..+++.++++.+|||||+|+| ++++|++++|.||++||||+||++++++.+++. ++|++.+|
T Consensus 92 ~~~PgPiTlI~~~~--~~~p~~l~~~~~tvgiRip~~~~~~~Ll~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~vd 168 (225)
T 2eqa_A 92 IVWPGPLTFVLKKT--ERVPKEVTAGLDTVAVRXPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVI-VDLNGRVD 168 (225)
T ss_dssp HHCSSSEEEEEEEC--TTSCHHHHTTCSEEEEECCCCHHHHHHHHHHTSCEEECBSSCTTSCCCCSHHHHH-HHHTTTSS
T ss_pred HCCCCCCCEEECCC--CCCCHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH-HHHCCCCC
T ss_conf 33887663364167--6676211599705888568988999998427982675113334444552056899-98678878
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHCCCEEC
Q ss_conf 11276645667673069962698243442488788887742273001
Q gi|254780760|r 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 (330)
Q Consensus 165 ~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i~~~l~~~v~ 211 (330)
+++|+|.|..|.+|||||+++ +.++|+|+|+++.++|+++++..+.
T Consensus 169 ~vid~g~~~~~~~STIvd~~~-~~~~ilR~G~~~~~~i~~~~~~~~~ 214 (225)
T 2eqa_A 169 VIIDGGHTFFGVESTIINVTV-EPPVLLRPGPFTIEELKKLFGEIVI 214 (225)
T ss_dssp EEEECCCCSSCSCCEEEECSC-CC-EEEECCSSCHHHHHHHCTTCBC
T ss_pred EEEEECCCCCCCCCCEEEEEC-CCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 998303456688773588740-6427996377578999998762023
No 2
>>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} (A:)
Probab=100.00 E-value=0 Score=373.70 Aligned_cols=192 Identities=23% Similarity=0.336 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999997598599907780004027999999999999708881065499967989977642005204689985
Q gi|254780760|r 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 (330)
Q Consensus 7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~ 86 (330)
.+.+.+++|+++|++|++|+|||||||||||+++|++||+|||++|+||.+|||+++++++++++.|+++++..++|+++
T Consensus 12 ~~~~~~~~a~~~L~~G~iii~PTdTvYgl~~~~~n~~Av~ri~~~K~R~~~Kpl~il~~~~~~~~~~~~~~~~~~~l~~~ 91 (206)
T 1k7j_A 12 PQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELSTYSFVDNVAFRLXKN 91 (206)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89899999999997699899976856478883799799999998528985578168503088887540025899999874
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCC-CHHHHHHHHHHCCCCC
Q ss_conf 058871886146787811655544457633224156-67666420142121234333485433-0177776644065542
Q gi|254780760|r 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISI-TNVKHILSSSICKEIP 164 (330)
Q Consensus 87 fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Sp-t~a~~v~~~~~~~~i~ 164 (330)
|||||+|+|+|.++. ....+++.+.+|||+|||+| ++++|++.+|.||++||||+||++++ +..+++. ++|++.+|
T Consensus 92 ~wPgplTli~~~~~~-~~~~~~~~~~~tvgiRiP~~~~~~~ll~~~g~PL~~TSAN~sG~~~~~~~~e~i~-~~~~~~vd 169 (206)
T 1k7j_A 92 NTPGNYTFILKGTKE-VPRRLLQEKRKTIGXRVPSNPIAQALLEALGEPXLSTSLXLPGSEFTESDPEEIK-DRLEKQVD 169 (206)
T ss_dssp SCSSSEEEEEEBCTT-SCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHH-HHHTTTCS
T ss_pred CCCCCCEEEECCCCC-CCHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHH-HHHCCCCE
T ss_conf 446872367437765-5234422787416686249879999999838985324445888876887799999-98567743
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHH
Q ss_conf 11276645667673069962698243442488788887
Q gi|254780760|r 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 (330)
Q Consensus 165 ~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i 202 (330)
+|+|||.|. |.+|||||+++ ++++|||+|+++.++|
T Consensus 170 ~vid~g~~~-~~~STIid~~~-~~~~ilR~G~i~~~~i 205 (206)
T 1k7j_A 170 LIIHGGYLG-QKPTTVIDLTD-DTPVVVREGVGDVKPF 205 (206)
T ss_dssp EEEECCCCC-SCCCEEEECGG-GCCEEEECCSSCSGGG
T ss_pred EEEECCCCC-CCCCEEEEEEC-CCEEEECCCCCCCHHH
T ss_conf 998389728-98995899879-9639984489861432
No 3
>>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} (A:)
Probab=100.00 E-value=0 Score=358.56 Aligned_cols=179 Identities=26% Similarity=0.370 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHHH
Q ss_conf 99999999999975985999077800040279999999999997088810654999679899776420---052046899
Q gi|254780760|r 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHLA 84 (330)
Q Consensus 8 d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l~ 84 (330)
+.+.+++|+++|++|++|+|||||||||+|+++|++||+|||++|+||.+||++++++++++++.|++ +++.+++|+
T Consensus 6 ~~~~i~~a~~~L~~G~vvi~PTdTvYgL~~~~~~~~Av~ri~~iK~R~~~kp~~ilv~~~~~~~~~~~~~~~~~~~~~l~ 85 (188)
T 1hru_A 6 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQLKPYIDDTXLTDVQRETI 85 (188)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 88999999999976998999879645899928998999999998099877881256125665344520456649999998
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 85058871886146787811655544457633224156-67666420142121234333485433017777664406554
Q gi|254780760|r 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 (330)
Q Consensus 85 ~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i 163 (330)
++|||||+|+|++.+ ..+++.++++.+|||+|||+| ++++|++.+|.||++||||+||++++++++++. +.|++.+
T Consensus 86 ~~~wPgplT~i~~~~--~~~~~~~~~~~~tigiRiP~~~~~~~ll~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~v 162 (188)
T 1hru_A 86 FSRWPGPVTFVFPAP--ATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAF 162 (188)
T ss_dssp HTTCSSSEEEEEECC--TTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHH-HHHCTTS
T ss_pred HCCCCCCCEEECCCC--CCCCHHHHCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHH-HHHCCCC
T ss_conf 637999848741325--6788567245761699825975789999982998998874568999989999999-9817887
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 211276645667673069962698243442
Q gi|254780760|r 164 PLIIDGGISKIGLESTIVNVQCEKKVRILR 193 (330)
Q Consensus 164 ~~ildgg~~~~GieSTiid~~~~~~~~IlR 193 (330)
|+++|+|.|. |.+||||||++ + +|||
T Consensus 163 d~iid~g~~~-~~~STIvd~~~-~--~ilR 188 (188)
T 1hru_A 163 PVVPGETGGR-LNPSEIRDALT-G--ELFR 188 (188)
T ss_dssp CBCCCCCCSS-CCCCEEEETTT-S--SBCC
T ss_pred EEEECCCCCC-CCCCEEEECCC-C--EEEC
T ss_conf 8997999877-89988898989-9--3749
No 4
>>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} (A:226-352)
Probab=99.93 E-value=9.3e-26 Score=186.87 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=84.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCC-----------CCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 22333321001245310111013577-----------7000002022235656651799759999999999989999999
Q gi|254780760|r 220 PQSPGMLKSHYAPRSQVRLRAIHVNP-----------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 (330)
Q Consensus 220 ~~SPG~~~~HYAP~~~V~L~~~~~~~-----------~e~ll~~~~~~~~~~~~~~~~~~Ls~~gd~~eaA~nLY~~LR~ 288 (330)
|+||||+|+||||+++|+|...+... ..+++.+.... ........+.++..+|++++|+|||+.||+
T Consensus 2 P~sPG~~~~HYaP~~~v~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~d~~~~A~~Ly~~LR~ 79 (127)
T 2eqa_A 2 ALAPGXKYKHYAPNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELS--KEFEGLQQIILGSDENLYEVARNLFDSFRE 79 (127)
T ss_dssp -------CCCCSCSSEEEEECCGGGHHHHHHHHTTTSCEEEEEEGGGT--GGGTTSEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCC--CCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 648865345767751599942764257899863656505898413223--345876089948999999999999999999
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99779989999638887610899989998405832
Q gi|254780760|r 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 (330)
Q Consensus 289 lD~~~~~~I~ve~ip~~glg~AI~DRL~RAA~~r~ 323 (330)
+|+.+++.|++|.+|++|+|.||||||+|||++|.
T Consensus 80 lD~~~~~~I~ie~~~~~~~~~AI~dRL~RAA~~~~ 114 (127)
T 2eqa_A 80 LDKLNVDLGIXIGFPERGIGFAIXNRARKASGFSI 114 (127)
T ss_dssp HHHSCCSEEEEECCCCSTTHHHHHHHHHHHTTSCE
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 97689998999908997719999989998769999
No 5
>>2yv4_A Hypothetical protein PH0435; alpha and beta proteins (A+B), SUA5 domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:)
Probab=99.92 E-value=2.2e-26 Score=190.98 Aligned_cols=102 Identities=18% Similarity=0.289 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 32233332100124531011101357770000020222356566517997599999999999899999999977998999
Q gi|254780760|r 219 TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 (330)
Q Consensus 219 ~~~SPG~~~~HYAP~~~V~L~~~~~~~~e~ll~~~~~~~~~~~~~~~~~~Ls~~gd~~eaA~nLY~~LR~lD~~~~~~I~ 298 (330)
+|+||||+|+||||+++|+|.+......+....++.+...... ..++++..+|++++|+|||+.||++|+.++++|+
T Consensus 1 AP~aPGmky~HYaP~~~~~l~~~~~~~~~~~~~vg~i~~~~~~---~~~~~~~~~d~~~~A~~Lf~~LR~~D~~~~~~I~ 77 (105)
T 2yv4_A 1 APNAEVIVVEGPREKVKGKITELVKELKERGKKVGVIGSESYN---ADEFFFLGSSVEEVAKNLFKALRYXDKAGVDVVI 77 (105)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHHHHHHHHTTCCEEEEESSCTT---CSEEEECCSSHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9998789995880888999999999988539849999147657---7538976989999999999999998616999799
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9638887610899989998405832
Q gi|254780760|r 299 FSSIPNHGLGIAINNRLERAAAPRN 323 (330)
Q Consensus 299 ve~ip~~glg~AI~DRL~RAA~~r~ 323 (330)
+|.+|++|+|.||||||+|||++|-
T Consensus 78 ~e~~~~~g~g~Ai~nRL~kAA~~~i 102 (105)
T 2yv4_A 78 AEGVEERGLGLAVXNRLRKASGYKI 102 (105)
T ss_dssp EEEESGGGHHHHHHHHC---CCCEE
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9818997718999999998656897
No 6
>>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} (A:1-58,A:124-171)
Probab=99.81 E-value=1.1e-19 Score=147.45 Aligned_cols=102 Identities=29% Similarity=0.536 Sum_probs=82.0
Q ss_pred CEEECCCC----HHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHC
Q ss_conf 94431799----99999999999759859990778000402799999999999970888106549996798997764200
Q gi|254780760|r 1 MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 (330)
Q Consensus 1 m~~~~~~d----~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~ 76 (330)
|+++++.. .+.|+++++.|++|++|+|||||||||||+++|++||+|||++|+|..-
T Consensus 1 MkIlki~~~np~~~~I~~ave~Lk~GgIIaiPTDTVYGLgcda~n~~AV~RL~~iK~R~~~------------------- 61 (106)
T 1jcu_A 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRDEI------------------- 61 (106)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCHH-------------------
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCHHH-------------------
T ss_conf 9799838999699999999999977998999779720367738998999999986300499-------------------
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 52046899850588718861467878116555444576332241566766642014212123433348543301777766
Q gi|254780760|r 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 (330)
Q Consensus 77 ~~~~~~l~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~ 156 (330)
- +.+. ..+|+.+||||+||+|..-..+++..
T Consensus 62 ---~--------------------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (106)
T 1jcu_A 62 ---C--------------------------------------------RRIA--ARFPVTATSANISGKPPSPRLEEIVR 92 (106)
T ss_dssp ---H--------------------------------------------HHHH--HHSCEEEEECCSSSCCSCSCHHHHHH
T ss_pred ---H--------------------------------------------HHHH--HCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf ---9--------------------------------------------9998--42990101457578978788899999
Q ss_pred HHHCCCCCCCCCCCCC
Q ss_conf 4406554211276645
Q gi|254780760|r 157 SSICKEIPLIIDGGIS 172 (330)
Q Consensus 157 ~~~~~~i~~ildgg~~ 172 (330)
+++ .+|+++|+|.|
T Consensus 93 -~~~-~~~~~~~~~~~ 106 (106)
T 1jcu_A 93 -DLD-AVDLVLDAGDC 106 (106)
T ss_dssp -HSS-SSEECCSSCCC
T ss_pred -HHC-CCCEEEECCCC
T ss_conf -855-85499979867
No 7
>>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} (A:59-123,A:172-208)
Probab=99.79 E-value=4e-20 Score=150.34 Aligned_cols=94 Identities=23% Similarity=0.342 Sum_probs=82.5
Q ss_pred CCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 81065499967989977642005204689985058871886146787811655544457633224156676664201421
Q gi|254780760|r 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 (330)
Q Consensus 55 p~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h~~~~ll~~~~~P 134 (330)
+.+||||+|++|+++++.|+++++.+++|+++|||||||+|++.+ ..+++.+++|++|||||||+
T Consensus 1 S~~KPLiVlv~di~~i~~~a~v~~~~~~Ll~~fwPGPLTiIl~a~--~~ip~~l~~g~~tIGVRIP~------------- 65 (102)
T 1jcu_A 1 SPHKPVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLERN--ELIPDVITGGSSRVGIRVPD------------- 65 (102)
T ss_dssp CTTSCCEEECSCTTTSTTTEECCHHHHHHHHHSCSSSEEEEEEEC--SCCCHHHHTTTTEEEEECCS-------------
T ss_pred CCCCCEEEEEHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEECCCC--CCCCHHHCCCCCCEEEECCC-------------
T ss_conf 034853677106665345431248899974015899832401334--56785565996401143478-------------
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHH
Q ss_conf 21234333485433017777664406554211276645667673069962698243442488788887
Q gi|254780760|r 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 (330)
Q Consensus 135 iaa~SAN~sG~~Spt~a~~v~~~~~~~~i~~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i 202 (330)
+|||+ ||||||++..| +|+|+|.......
T Consensus 66 --------------------------------~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~ 94 (102)
T 1jcu_A 66 --------------------------------LDMEP------STVIDLTVNPP-RVLRRGKGPLDPV 94 (102)
T ss_dssp --------------------------------SCSCC------CEEECCCSSSC-CEEECCCSSCCCC
T ss_pred --------------------------------CCCCC------CEEEEEECCCE-EEEEECCCCHHHH
T ss_conf --------------------------------79999------88899049946-9999379967798
No 8
>>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} (A:1-167,A:258-300)
Probab=47.98 E-value=15 Score=17.09 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 999997598599907780004027999999999999708881065499967989977642
Q gi|254780760|r 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 (330)
Q Consensus 15 a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~ 74 (330)
-+.+|.+.+++-++.+. +||.--+...++.+.+.+.+..+-+-.+-+.+--..+.|+
T Consensus 64 ~v~al~d~~vyris~~~---iGCsla~~a~~~~~l~~~~~~p~~~~v~yint~~e~ka~a 120 (210)
T 1wzu_A 64 TAKILNPDKVVLIPSRE---ATCAMANMLKVEHILEAKRKYPNAPVVLYVNSTAEAKAYA 120 (210)
T ss_dssp HHHHHCTTSEEECCC---------------CHHHHHHHHHSTTSCEEEESSSCHHHHTTC
T ss_pred HHHHCCCCCCEEECCCC---CCCCHHHHCCHHHHHHHHHHCCCCCEEEEEECHHHHHCCC
T ss_conf 58655987614644845---5778778689999999998789972699983558874058
No 9
>>1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} (A:)
Probab=47.53 E-value=18 Score=16.60 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=29.5
Q ss_pred EEEEEECCCCEEEEECC--CCCHHHHHHHCCCEECCCCCCCCCCCCCCCC
Q ss_conf 06996269824344248--8788887742273001333344332233332
Q gi|254780760|r 179 TIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYCVDETSTPQSPGML 226 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G--~i~~~~i~~~l~~~v~~~~~~~~~~~SPG~~ 226 (330)
+++.. ++ +.++||| +|+..++.+++|..+.......+ +..+.++
T Consensus 15 ~~lt~--~~-l~~~RPg~~Gi~p~~~~~viGk~~~rdi~~~~-~i~~~di 60 (64)
T 1ucs_A 15 TALTL--IM-MKAEVVTPMGIPAEEIPKLVGMQVNRAVPLGT-TLMPDMV 60 (64)
T ss_dssp CBCCG--GG-EEEECCSSCCSBGGGHHHHTTCBBSSCBCTTC-BCCGGGB
T ss_pred CCCCH--HH-HHEEECCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCHHHH
T ss_conf 54227--67-41231278888989999987388710516898-5337666
No 10
>>1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth inhibition, pretzel fold, glycoprotein; 2.00A {Macrozoarces americanus} (A:)
Probab=44.83 E-value=16 Score=16.86 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=26.8
Q ss_pred EEEEEECCCCEEEEECC--CCCHHHHHHHCCCEECCCCCCCC
Q ss_conf 06996269824344248--87888877422730013333443
Q gi|254780760|r 179 TIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYCVDETS 218 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G--~i~~~~i~~~l~~~v~~~~~~~~ 218 (330)
+++ +.+ -+.++||| +|+..++.+++|..+.......+
T Consensus 14 e~i--t~~-~l~~kRPg~~Gi~p~~~~~viGk~~~~di~~~~ 52 (64)
T 1ops_A 14 TAL--TPA-MMEGKVTNPIGIPFAEMSQLVGKQVNTPVAKGQ 52 (64)
T ss_dssp CBC--CGG-GEEEECCSSCCSBGGGGGGTTTCBBSSCBCTTC
T ss_pred CCC--CHH-HCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 892--889-912644789985999999986687615547979
No 11
>>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=44.30 E-value=12 Score=17.70 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=24.0
Q ss_pred EEEEEECCCCEEEEECC--CCCHHHHHHHCCCEECCC
Q ss_conf 06996269824344248--878888774227300133
Q gi|254780760|r 179 TIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYC 213 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G--~i~~~~i~~~l~~~v~~~ 213 (330)
+++.. ++ +.++|+| .|+..++.+++|..+...
T Consensus 19 ~ilt~--~d-l~~~RPg~~Gi~p~~~~~iiGk~~~r~ 52 (79)
T 1wvo_A 19 TILTM--DM-LTVKVGEPKGYPPEDIFNLVGKKVLVT 52 (79)
T ss_dssp CBCCG--GG-EEEETTCCCSSCSSSHHHHTTCBBSSC
T ss_pred CEEHH--HH-CEEECCCCCCCCCCHHHHHCCCHHHHC
T ss_conf 89407--63-278518999869341788731077633
No 12
>>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} (A:)
Probab=43.97 E-value=22 Score=16.02 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 799999999999997598599907780
Q gi|254780760|r 6 ITDSNALRKACEFLDAGLPIAIPTETV 32 (330)
Q Consensus 6 ~~d~~~i~~a~~~L~~G~~v~~PTeTv 32 (330)
..|..+|++|.+.+..|++|.||--|-
T Consensus 34 tDdt~Aiq~Ai~aa~~g~~V~~P~G~Y 60 (422)
T 1rmg_A 34 TDVGPAITSAWAACKSGGLVYIPSGNY 60 (422)
T ss_dssp SBCHHHHHHHHHHHTBTCEEEECSSEE
T ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCE
T ss_conf 058999999998657999999899828
No 13
>>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:1-64)
Probab=43.92 E-value=17 Score=16.76 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=26.7
Q ss_pred EEEEEECCCCEEEEECC--CCCHHHHHHHCCCEECCCCCCCC
Q ss_conf 06996269824344248--87888877422730013333443
Q gi|254780760|r 179 TIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYCVDETS 218 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G--~i~~~~i~~~l~~~v~~~~~~~~ 218 (330)
+++ +-++ +.++||| +|+..++.+++|..+.......+
T Consensus 15 ~~i--t~~~-l~~~RPg~~Gi~p~~~~~iiGk~~~~di~~~~ 53 (64)
T 1c89_A 15 TAL--TLIM-MKAEVVTPMGIPAEEIPNLVGMQVNRAVPLGT 53 (64)
T ss_dssp CCC--CTTT-EEEECCSSCCSBSTTHHHHTTCCCSSCBCTTE
T ss_pred CCC--CHHH-HEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 641--2536-11453267888878988876267754222697
No 14
>>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} (A:)
Probab=38.92 E-value=23 Score=15.87 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=23.9
Q ss_pred CEEEEECC--CCCHHHHHHHCCCEECCCCCCC
Q ss_conf 24344248--8788887742273001333344
Q gi|254780760|r 188 KVRILRPG--GLEIETLKRAISVELEYCVDET 217 (330)
Q Consensus 188 ~~~IlR~G--~i~~~~i~~~l~~~v~~~~~~~ 217 (330)
-+.+.||| +|+.+++..++|..+.......
T Consensus 22 di~~kRPg~~Gi~p~~~~~viGk~~~rdi~~g 53 (70)
T 1msi_A 22 MMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLG 53 (70)
T ss_dssp GEEEECCSSCCSBGGGHHHHTTCBBSSCBCTT
T ss_pred HHEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 63034317888898999898607762150689
No 15
>>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:301-385)
Probab=34.68 E-value=30 Score=15.09 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=24.4
Q ss_pred EEEEEECCCCEEEEECC----CCCHHHHHHHC-CCEECCCCC
Q ss_conf 06996269824344248----87888877422-730013333
Q gi|254780760|r 179 TIVNVQCEKKVRILRPG----GLEIETLKRAI-SVELEYCVD 215 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G----~i~~~~i~~~l-~~~v~~~~~ 215 (330)
+++ +.++ +.++||| +|+...+.++| |..+.....
T Consensus 28 ~~l--t~~~-i~~kRPg~~~~Gi~p~~~~~vl~Gk~~~rdi~ 66 (85)
T 1vli_A 28 EAF--SEDN-IAVLRPGQKPQGLHPRFFELLTSGVRAVRDIP 66 (85)
T ss_dssp CBC--CTTT-EEEECCTTSCCCBCGGGHHHHHTTCBCSSCBC
T ss_pred CEE--CHHH-EEEECCCCCCCCCCHHHHHHHHCCCEEECCCC
T ss_conf 995--5899-57878778888869899999767939916059
No 16
>>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} (A:49-259,A:360-538)
Probab=33.30 E-value=16 Score=16.81 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=18.4
Q ss_pred CCCCCCCCHHHHCCC-CCCCCCEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 001245310111013-577700000202223565665179975999
Q gi|254780760|r 228 SHYAPRSQVRLRAIH-VNPREALIRFGNVPIKNIENAIISLNLSKT 272 (330)
Q Consensus 228 ~HYAP~~~V~L~~~~-~~~~e~ll~~~~~~~~~~~~~~~~~~Ls~~ 272 (330)
.-|+|-+.+...+.+ .+.. ....|...-...+++....+|+|+.
T Consensus 235 ~a~ap~adl~w~et~~p~~~-~a~~f~~~i~~~~p~~~l~yn~sps 279 (390)
T 1dqu_A 235 VAYAPFADLIWMESKLPDYK-QAKEFADGVHAVWPEQKLAYNLSPS 279 (390)
T ss_dssp HHHTTSCSEEECCCSSCCHH-HHHHHHHHHHHHCTTCEEEEECCSS
T ss_pred HHCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 84187777777607999999-9999999999878996466448987
No 17
>>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Erwinia carotovora} (A:)
Probab=31.77 E-value=25 Score=15.61 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 7999999999999975985999077800
Q gi|254780760|r 6 ITDSNALRKACEFLDAGLPIAIPTETVY 33 (330)
Q Consensus 6 ~~d~~~i~~a~~~L~~G~~v~~PTeTvY 33 (330)
..|..+|++|++....|++|.||.=|-+
T Consensus 23 tDDt~Aiq~Ai~aa~~g~~V~iP~GtY~ 50 (376)
T 1bhe_A 23 STATSTIQKALNNCDQGKAVRLSAGSTS 50 (376)
T ss_dssp SBCHHHHHHHHTTCCTTCEEEEECSSSS
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 7269999999997779999999699744
No 18
>>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:65-134)
Probab=29.88 E-value=29 Score=15.22 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=25.7
Q ss_pred EEEEEECCCCEEEEECC--CCCHHHHHHHCCCEECCCCCC
Q ss_conf 06996269824344248--878888774227300133334
Q gi|254780760|r 179 TIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYCVDE 216 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G--~i~~~~i~~~l~~~v~~~~~~ 216 (330)
+++ +-++ +.+.||| +|+...+.+++|..+......
T Consensus 21 ~~i--t~~~-l~~kRPg~~Gi~p~~~~~iiGk~~~~~i~~ 57 (70)
T 1c89_A 21 TAL--TLVM-MKAEEVSPKGIPSEEISKLVGMQVNRAVYL 57 (70)
T ss_dssp CCB--CTTT-CEEEECSSCCCBSSSHHHHTTBCCSSCBCS
T ss_pred CCC--CHHH-CCEEECCCCCCCHHHHHHHHCHHHHHCCCC
T ss_conf 886--8889-125527999879889998619564413389
No 19
>>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:277-349)
Probab=29.73 E-value=36 Score=14.57 Aligned_cols=36 Identities=8% Similarity=0.269 Sum_probs=26.1
Q ss_pred EEEEEECCCCEEEEECC--CCCHHHHHHHCCCEECCCCCCC
Q ss_conf 06996269824344248--8788887742273001333344
Q gi|254780760|r 179 TIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYCVDET 217 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G--~i~~~~i~~~l~~~v~~~~~~~ 217 (330)
+++.. ++ +.++||| +|+..++..++|..+.......
T Consensus 27 ~~it~--~~-l~~kRPg~Ggi~p~~~~~iiGk~~~r~i~~~ 64 (73)
T 2wqp_A 27 ELLSG--DN-LWVKRPGNGDFSVNEYETLFGKVAACNIRKG 64 (73)
T ss_dssp CBCCT--TT-EEEESCTTSSSBGGGGGGGTTCBBSSCBCTT
T ss_pred CEECH--HH-EEEECCCCCCCCHHHHHHHCCCEECCCCCCC
T ss_conf 89658--99-5898897998499999986690783445897
No 20
>>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* (A:154-608)
Probab=29.65 E-value=28 Score=15.31 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCHHEEE
Q ss_conf 7999999999999975985999077800040
Q gi|254780760|r 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA 36 (330)
Q Consensus 6 ~~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg 36 (330)
..|+.+|++|.+....|+.|.||.-| |-+.
T Consensus 17 tDDt~Aiq~Ai~~a~~gg~V~iP~G~-Y~~~ 46 (455)
T 2uvf_A 17 TLNTKAIQQAIDSCKPGCRVEIPAGT-YKSG 46 (455)
T ss_dssp CCCHHHHHHHHHTCCTTEEEEECSEE-EEEC
T ss_pred CCCHHHHHHHHHHCCCCCEEEECCCC-EEEC
T ss_conf 22399999999876699989988982-5871
No 21
>>2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus HB8} (A:1-151,A:271-301)
Probab=26.79 E-value=40 Score=14.26 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred ECCCCCHHHHHHHHHH----HCCC-CCCC-----EEEEECCHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCC-----C
Q ss_conf 0279999999999997----0888-1065-----4999679899776420052046899850588718861467-----8
Q gi|254780760|r 36 AVDSRNPTAIRRLYEI----KKRP-AMNP-----LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-----S 100 (330)
Q Consensus 36 g~~a~~~~av~~I~~~----K~Rp-~~~P-----li~~v~~~~~~~~~~~~~~~~~~l~~~fwPGplT~il~~~-----~ 100 (330)
.-+-++.+.++.|+.. |..+ ..++ +.+++.....-. ...+..+-...=| -++.+... +
T Consensus 14 ~~~dls~~ei~~ll~~A~~lk~~~~~~~~L~gk~i~llF~e~StRT------R~SFe~A~~~LGg-~~i~l~~~~s~~~k 86 (182)
T 2ef0_A 14 DFSGYGPKELQALLDLAEQLKRERYRGEDLKGKVLALLFEKPSLRT------RTTLEVAMVHLGG-HAVYLDQKQVGIGE 86 (182)
T ss_dssp SSTTCCHHHHHHHHHHHHHHHHHTCCCCTTTTCEEEEEESSCCHHH------HHHHHHHHHHTTC-EEEEEEGGGSCTTT
T ss_pred CHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHH------HHHHHHHHHHHCC-CCCCCCCCCCCCCC
T ss_conf 6232999999999999999874633576578988999844787118------9999999997225-51125431012333
Q ss_pred CCCCCC---CCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHH-HH--HHHHHCCCCCCCCCCCCC
Q ss_conf 781165---5544457633224156-676664201421212343334854330177-77--664406554211276645
Q gi|254780760|r 101 TTDIHP---LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVK-HI--LSSSICKEIPLIIDGGIS 172 (330)
Q Consensus 101 ~~~i~~---~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~-~v--~~~~~~~~i~~ildgg~~ 172 (330)
+..+-+ .+.+-.+-+.+|.|.| ...++.+..+.|+.--- +|.--||.+- |+ +.+.||+ |-|+||-.|
T Consensus 87 gEs~~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~---~~~~HPtQaLaDl~Ti~e~~G~--~~v~~~~~s 160 (182)
T 2ef0_A 87 REPVRDVAKNLERFVEGIAARVFRHETVEALARHAKVPVVNAL---SDRAHPLQALADLLTLKEVFGG--EEAVHGPRS 160 (182)
T ss_dssp CCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEEEE---CSSCCHHHHHHHHHHHHHHHSC--HHHHHSTTB
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCC--HHHHCCCCC
T ss_conf 2119999987630355035895262209999964688734466---7587999999999999998587--767569855
No 22
>>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus HB8} (A:1-27,A:66-152)
Probab=23.59 E-value=46 Score=13.86 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=41.9
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCC-H-HHH---HHHHHHHCCCE-EECCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 71886146787811655544457633224-1-566---76664201421-212343334854330177776644065542
Q gi|254780760|r 91 PLTLVLDLLSTTDIHPLSTANLKTACFRV-P-CGF---TKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIP 164 (330)
Q Consensus 91 plT~il~~~~~~~i~~~~t~~~~tvavRi-P-~h~---~~~ll~~~~~P-iaa~SAN~sG~~Spt~a~~v~~~~~~~~i~ 164 (330)
-+|+|.. .++.+|.-+ .+..+||+ | ..+ ..++.++-..- ...-|..+|| |--++..+ .+.+.+++
T Consensus 2 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~pge~~e~f~~l~e~G~~Ii~I~iSs~LSG--Tyn~a~~a-a~~~~~kI- 72 (114)
T 2dt8_A 2 RITLVTD--STSDLPQDL---RGRLGVRVVPPEDFARVYREALEEADHVLSLHISGKLSG--TVQSAELA-AQEFPGRV- 72 (114)
T ss_dssp CEEEEEE--GGGCCCHHH---HTTTTCEEECHHHHHHHHHHHTTSCSEEEEEESCTTTCT--HHHHHHHH-HTTSTTSE-
T ss_pred CEEEEEE--CCCCCCHHH---HHHCCCEEEEHHHHHHHHHHHHHCCCEEEEECCCCCHHH--HHHHHHHH-HHHCCCCE-
T ss_conf 8899997--888999999---986893899899999999998726984999737741318--99999999-97589989-
Q ss_pred CCCCCCCCC
Q ss_conf 112766456
Q gi|254780760|r 165 LIIDGGISK 173 (330)
Q Consensus 165 ~ildgg~~~ 173 (330)
.++|.+...
T Consensus 73 ~VIDS~~~s 81 (114)
T 2dt8_A 73 TVVDTQAAS 81 (114)
T ss_dssp EEEECSCCT
T ss_pred EEECCCCHH
T ss_conf 999288422
No 23
>>1u6l_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.81A {Pseudomonas aeruginosa PAO1} (A:77-149)
Probab=21.48 E-value=51 Score=13.59 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=21.4
Q ss_pred ECCCCHHHHHHHHHHHHCCCEEEEE-CCCHHE
Q ss_conf 3179999999999999759859990-778000
Q gi|254780760|r 4 MSITDSNALRKACEFLDAGLPIAIP-TETVYG 34 (330)
Q Consensus 4 ~~~~d~~~i~~a~~~L~~G~~v~~P-TeTvYG 34 (330)
+...+.+.+++..+.|..|+-|..| ++|-||
T Consensus 10 ~~~~~~~ev~~~~~~l~~gg~v~~p~~~~~wg 41 (73)
T 1u6l_A 10 LNVDSKAEAERLFNALAEGGSVQXPLGPTFWA 41 (73)
T ss_dssp EECSSHHHHHHHHHHHHTTSEEEEEEEEETTE
T ss_pred EECCCHHHHHHHHHHHCCCCEEEECHHHCCCC
T ss_conf 99388999999998603487375084245777
No 24
>>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421} (A:1-154,A:283-323)
Probab=20.26 E-value=51 Score=13.58 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=66.2
Q ss_pred EECCCCCHHHHHHHH----HHHCCCCCCC-----EEEEECCHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCC-----C
Q ss_conf 402799999999999----9708881065-----4999679899776420052046899850588718861467-----8
Q gi|254780760|r 35 LAVDSRNPTAIRRLY----EIKKRPAMNP-----LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-----S 100 (330)
Q Consensus 35 lg~~a~~~~av~~I~----~~K~Rp~~~P-----li~~v~~~~~~~~~~~~~~~~~~l~~~fwPGplT~il~~~-----~ 100 (330)
|.-+-++++-+..|| .+|.....++ +.+++.....-.+ ..+..+.+.. |.-++.+... +
T Consensus 17 l~i~dls~~el~~ll~~A~~lk~~~~~~~L~gk~v~llF~e~STRTR------~SFe~A~~~L-G~~~i~l~~~~s~~~k 89 (195)
T 3gd5_A 17 LSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTR------VSFTVAMYQL-GGQVIDLSPSNTQVGR 89 (195)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHHHTSSCCCCTTCEEEEEESSCCHHHH------HHHHHHHHHT-TCEEEEC---------
T ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHH------HHHHHHHHHC-CCCEEECCCCCCCCCC
T ss_conf 56232899999999999999872686767799989998568973369------9999999973-9758843641123566
Q ss_pred CCCCCC---CCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHH-HH--HHHHHCCCCCCCCCCCC
Q ss_conf 781165---5544457633224156-676664201421212343334854330177-77--66440655421127664
Q gi|254780760|r 101 TTDIHP---LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVK-HI--LSSSICKEIPLIIDGGI 171 (330)
Q Consensus 101 ~~~i~~---~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~-~v--~~~~~~~~i~~ildgg~ 171 (330)
+..+-+ .+.+-.+-+.+|.|.| ....+.+..+.||+--- +|.--||.+- |+ +.+.||+ |-|+||..
T Consensus 90 gEsi~DtarvLs~~~D~iv~R~~~~~~~~~~a~~~~vPVINag---~~~~HPtQ~LaDl~Ti~e~~G~--~~v~d~~~ 162 (195)
T 3gd5_A 90 GEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINAL---TDHEHPCQVVADLLTIRENFGR--DEVMEGPR 162 (195)
T ss_dssp -CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHCSCEEEEE---CSSCCHHHHHHHHHHHHHHHSC--HHHHHSTT
T ss_pred CCCHHHHHHHHCCCCHHHEEEHHHHHHHHHHCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCC--HHHHCCCC
T ss_conf 5202357887420221330200002448872455776750576---5478899999988788998687--77755997
Done!