HHSEARCH alignment of GI: 254780760 and SCOP domain: d1jcua_

Alignment
>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=100.00  E-value=0  Score=374.31  Aligned_cols=196  Identities=26%  Similarity=0.425  Sum_probs=177.9

Q ss_pred             CEEECCC----CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHC
Q ss_conf             9443179----999999999999759859990778000402799999999999970888106549996798997764200
Q gi|254780760|r    1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV   76 (330)
Q Consensus         1 m~~~~~~----d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~   76 (330)
                      |.|.+++    +++.|++|+++|++|++|+||||||||||||++|++||+|||++|+|+.++|+++++++++++..|+.+
T Consensus         1 m~i~~i~~~n~~~~~i~~a~~~L~~Ggivi~PTdtvYgl~c~a~~~~av~~i~~lK~R~~~kp~~vl~~~~~~~~~~~~~   80 (208)
T d1jcua_           1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRP   80 (208)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEEC
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCHHHHHHHHHHH
T ss_conf             97998489996999999999999769979997686303677079917899999863013333121000055532244455


Q ss_pred             CCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             5204689985058871886146787811655544457633224156-676664201421212343334854330177776
Q gi|254780760|r   77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL  155 (330)
Q Consensus        77 ~~~~~~l~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~  155 (330)
                      ++.+++++++|||||+|+|++.  +..++..++++.++||||+|+| ++++|++.  +||++||||+||++++++.+++.
T Consensus        81 ~~~~~~l~~~~~pgp~Tii~~~--~~~~~~~~~~~~~~vgiRip~~~~~~~L~~~--~Pl~~TSAN~sG~~~~~~~~ei~  156 (208)
T d1jcua_          81 SGDAMELMERILPGPYTVVLER--NELIPDVITGGSSRVGIRVPDDEICRRIAAR--FPVTATSANISGKPPSPRLEEIV  156 (208)
T ss_dssp             CHHHHHHHHHSCSSSEEEEEEE--CSCCCHHHHTTTTEEEEECCSCHHHHHHHHH--SCEEEEECCSSSCCSCSCHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCEEHHH--HHHHHHHHCCCCCCEEEECCCHHHHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             6888886401565444110111--1004565259963000325662778887507--98111124533232210368999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHH
Q ss_conf             644065542112766456676730699626982434424887888877
Q gi|254780760|r  156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK  203 (330)
Q Consensus       156 ~~~~~~~i~~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i~  203 (330)
                       ++|+ .+|+|+|+|.|..|.+||||||++ ++++|||+|+++.++|.
T Consensus       157 -~~~~-~vd~iid~g~~~~~~~STIid~~~-~~~~IlR~G~i~~~~i~  201 (208)
T d1jcua_         157 -RDLD-AVDLVLDAGDCLDMEPSTVIDLTV-NPPRVLRRGKGPLDPVL  201 (208)
T ss_dssp             -HHSS-SSEECCSSCCCSCSCCCEEECCCS-SSCCEEECCCSSCCCCC
T ss_pred             -HHHC-CCCEEEECCCCCCCCCCEEEEEEC-CCEEEEEECCCCHHHHH
T ss_conf             -9855-866899798677999998899138-93499994799778987


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein MTH1692
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]