Query gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 330
No_of_seqs 200 out of 2688
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 06:43:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780760.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jcua_ d.115.1.1 (A:) Hypothe 100.0 0 0 374.3 11.0 196 1-203 1-201 (208)
2 d1k7ja_ d.115.1.1 (A:) Hypothe 100.0 0 0 367.6 16.2 192 7-202 12-205 (206)
3 d1hrua_ d.115.1.1 (A:) Hypothe 100.0 0 0 334.9 14.5 179 8-193 4-186 (186)
4 d1m3ua_ c.1.12.8 (A:) Ketopant 66.4 2.9 0.00021 19.1 3.6 40 275-315 154-193 (262)
5 d1yt3a3 c.55.3.5 (A:1-193) Rib 49.4 6.2 0.00045 17.0 2.9 31 1-31 1-31 (193)
6 d1bhea_ b.80.1.3 (A:) Polygala 42.5 5.1 0.00037 17.6 1.6 31 6-36 23-55 (376)
7 d1vlia1 b.85.1.1 (A:297-368) S 41.8 9.2 0.00067 15.9 2.8 30 187-216 25-59 (72)
8 d1kfsa1 c.55.3.5 (A:324-518) E 39.9 9.1 0.00067 15.9 2.6 29 4-32 8-36 (195)
9 d1oy0a_ c.1.12.8 (A:) Ketopant 30.8 14 0.001 14.7 3.7 38 276-315 159-196 (262)
10 d1opsa_ b.85.1.1 (A:) Type III 30.0 9.4 0.00068 15.8 1.3 50 179-231 14-63 (64)
11 d1o66a_ c.1.12.8 (A:) Ketopant 28.6 15 0.0011 14.4 3.8 38 276-315 156-193 (260)
12 d2f06a1 d.58.18.11 (A:71-141) 28.5 11 0.00079 15.4 1.4 13 123-135 50-62 (71)
13 d1mvfd_ b.129.1.1 (D:) MazE {E 27.0 8.4 0.00061 16.1 0.7 15 113-127 8-22 (44)
14 d1hq0a_ d.194.1.1 (A:) Type 1 26.8 12 0.00084 15.2 1.3 40 103-147 110-149 (295)
15 d2g7ga1 a.4.1.9 (A:9-73) Putat 22.8 8.2 0.0006 16.2 -0.0 34 191-237 14-47 (65)
16 d1snna_ d.115.1.2 (A:) 3,4-dih 22.5 20 0.0014 13.7 4.7 77 10-91 1-91 (219)
17 d1ylea1 d.108.1.8 (A:1-338) Ar 20.5 9.3 0.00067 15.9 -0.2 13 159-172 247-259 (338)
18 d2zdra1 b.85.1.1 (A:282-349) C 20.2 22 0.0016 13.4 3.1 30 188-217 28-59 (68)
No 1
>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=100.00 E-value=0 Score=374.31 Aligned_cols=196 Identities=26% Similarity=0.425 Sum_probs=177.9
Q ss_pred CEEECCC----CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHC
Q ss_conf 9443179----999999999999759859990778000402799999999999970888106549996798997764200
Q gi|254780760|r 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 (330)
Q Consensus 1 m~~~~~~----d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~ 76 (330)
|.|.+++ +++.|++|+++|++|++|+||||||||||||++|++||+|||++|+|+.++|+++++++++++..|+.+
T Consensus 1 m~i~~i~~~n~~~~~i~~a~~~L~~Ggivi~PTdtvYgl~c~a~~~~av~~i~~lK~R~~~kp~~vl~~~~~~~~~~~~~ 80 (208)
T d1jcua_ 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRP 80 (208)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEEC
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCHHHHHHHHHHH
T ss_conf 97998489996999999999999769979997686303677079917899999863013333121000055532244455
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 5204689985058871886146787811655544457633224156-676664201421212343334854330177776
Q gi|254780760|r 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 (330)
Q Consensus 77 ~~~~~~l~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~ 155 (330)
++.+++++++|||||+|+|++. +..++..++++.++||||+|+| ++++|++. +||++||||+||++++++.+++.
T Consensus 81 ~~~~~~l~~~~~pgp~Tii~~~--~~~~~~~~~~~~~~vgiRip~~~~~~~L~~~--~Pl~~TSAN~sG~~~~~~~~ei~ 156 (208)
T d1jcua_ 81 SGDAMELMERILPGPYTVVLER--NELIPDVITGGSSRVGIRVPDDEICRRIAAR--FPVTATSANISGKPPSPRLEEIV 156 (208)
T ss_dssp CHHHHHHHHHSCSSSEEEEEEE--CSCCCHHHHTTTTEEEEECCSCHHHHHHHHH--SCEEEEECCSSSCCSCSCHHHHH
T ss_pred HHHHHHHHHCCCCCCCCEEHHH--HHHHHHHHCCCCCCEEEECCCHHHHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 6888886401565444110111--1004565259963000325662778887507--98111124533232210368999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHH
Q ss_conf 644065542112766456676730699626982434424887888877
Q gi|254780760|r 156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 (330)
Q Consensus 156 ~~~~~~~i~~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i~ 203 (330)
++|+ .+|+|+|+|.|..|.+||||||++ ++++|||+|+++.++|.
T Consensus 157 -~~~~-~vd~iid~g~~~~~~~STIid~~~-~~~~IlR~G~i~~~~i~ 201 (208)
T d1jcua_ 157 -RDLD-AVDLVLDAGDCLDMEPSTVIDLTV-NPPRVLRRGKGPLDPVL 201 (208)
T ss_dssp -HHSS-SSEECCSSCCCSCSCCCEEECCCS-SSCCEEECCCSSCCCCC
T ss_pred -HHHC-CCCEEEECCCCCCCCCCEEEEEEC-CCEEEEEECCCCHHHHH
T ss_conf -9855-866899798677999998899138-93499994799778987
No 2
>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=367.55 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999997598599907780004027999999999999708881065499967989977642005204689985
Q gi|254780760|r 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 (330)
Q Consensus 7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~ 86 (330)
.+.+.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+|||+++++|++++..|+.+++.+.+|+++
T Consensus 12 p~~~~i~~a~~~L~~G~vv~~PTdTvYgl~~da~~~~av~~i~~iK~R~~~kpl~vlv~~~~~~~~~~~~~~~~~~l~~~ 91 (206)
T d1k7ja_ 12 PQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKN 91 (206)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999997699899977853278880798078999998621101245553257899999886530455553012
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf 058871886146787811655544457633224156-676664201421212343334854-330177776644065542
Q gi|254780760|r 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIP 164 (330)
Q Consensus 87 fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~-Spt~a~~v~~~~~~~~i~ 164 (330)
|||||+|+|++.++. ....+++++.+|||||||+| ++++|++.+|.||++||||+||.+ +++.++++. +.|++.+|
T Consensus 92 ~wPgplT~i~~~~~~-~~~~~~~~~~~tv~iRip~~~~~~~Ll~~~~~Pl~sTSAN~sG~~~~~~~~~~i~-~~~~~~vd 169 (206)
T d1k7ja_ 92 NTPGNYTFILKGTKE-VPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIK-DRLEKQVD 169 (206)
T ss_dssp SCSSSEEEEEEBCTT-SCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHH-HHHTTTCS
T ss_pred CCCCCEEEEECCCCC-CCCHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHH-HHHCCCCE
T ss_conf 455440255427766-6203330466444444214521289998512764541134443444568799999-98578753
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHH
Q ss_conf 11276645667673069962698243442488788887
Q gi|254780760|r 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 (330)
Q Consensus 165 ~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i 202 (330)
+++|+|.+. |.+|||||++. ++++|+|+|+++.++.
T Consensus 170 ~iid~g~~~-~~pSTIid~~~-~~~~ilR~Ga~~~~~~ 205 (206)
T d1k7ja_ 170 LIIHGGYLG-QKPTTVIDLTD-DTPVVVREGVGDVKPF 205 (206)
T ss_dssp EEEECCCCC-SCCCEEEECGG-GCCEEEECCSSCSGGG
T ss_pred EEEECCCCC-CCCCEEEEEEC-CCEEEEECCCCCCHHH
T ss_conf 999488728-98996899979-9749990489870532
No 3
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=334.92 Aligned_cols=179 Identities=26% Similarity=0.358 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHHH
Q ss_conf 99999999999975985999077800040279999999999997088810654999679899776420---052046899
Q gi|254780760|r 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHLA 84 (330)
Q Consensus 8 d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l~ 84 (330)
+.+.|++|+++|++|++|+|||||+||||||++|++||+|||++|+|+.++|+++++++++++..|+. ..+...+++
T Consensus 4 ~~d~i~~a~~~L~~G~iv~~PTdt~Ygl~~~~~~~~av~~i~~~K~R~~~kp~~vlv~~~~~~~~~~~~~~~~~~~~~~~ 83 (186)
T d1hrua_ 4 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETI 83 (186)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 87999999999976998999878631788958996899999986300113320023205665333301440479999999
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 85058871886146787811655544457633224156-67666420142121234333485433017777664406554
Q gi|254780760|r 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 (330)
Q Consensus 85 ~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i 163 (330)
++|||||+|+|+|.++ .++++++.+.+|||||+|+| ++++|++++|.||++||||+||++++++.+++. +.|++.+
T Consensus 84 ~~~~Pgplt~i~~~~~--~~~~~~~~~~~tigvRiP~~~~~~~L~~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~v 160 (186)
T d1hrua_ 84 FSRWPGPVTFVFPAPA--TTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAF 160 (186)
T ss_dssp HTTCSSSEEEEEECCT--TSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHH-HHHCTTS
T ss_pred HHCCCCCCEECCCCCC--CCCCHHHHCCCEEEEEECHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHH-HHHCCCC
T ss_conf 8669976410355545--786012203321233202168899999983990796112569899877199999-9838974
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 211276645667673069962698243442
Q gi|254780760|r 164 PLIIDGGISKIGLESTIVNVQCEKKVRILR 193 (330)
Q Consensus 164 ~~ildgg~~~~GieSTiid~~~~~~~~IlR 193 (330)
++|+|++.+ .+.+|||||+++ + +|+|
T Consensus 161 d~i~~~~~~-~~~~STIid~~~-~--~iiR 186 (186)
T d1hrua_ 161 PVVPGETGG-RLNPSEIRDALT-G--ELFR 186 (186)
T ss_dssp CBCCCCCCS-SCCCCEEEETTT-S--SBCC
T ss_pred EEEECCCCC-CCCCCEEEECCC-C--EEEC
T ss_conf 899789877-789858898969-9--8849
No 4
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}
Probab=66.43 E-value=2.9 Score=19.12 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99999989999999997799899996388876108999899
Q gi|254780760|r 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 (330)
Q Consensus 275 ~~eaA~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL 315 (330)
-.+-|..||...+.+++.|+..|++|.+|++ +...|-+++
T Consensus 154 t~~ea~~l~~~a~~le~AGaf~ivlE~vp~~-va~~It~~~ 193 (262)
T d1m3ua_ 154 GDEAGDQLLSDALALEAAGAQLLVLECVPVE-LAKRITEAL 193 (262)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEEESCCHH-HHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEECCCHH-HHHHHHHHH
T ss_conf 3899999999999998605517987423188-999987400
No 5
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=49.41 E-value=6.2 Score=16.99 Aligned_cols=31 Identities=39% Similarity=0.406 Sum_probs=27.7
Q ss_pred CEEECCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 9443179999999999999759859990778
Q gi|254780760|r 1 MQIMSITDSNALRKACEFLDAGLPIAIPTET 31 (330)
Q Consensus 1 m~~~~~~d~~~i~~a~~~L~~G~~v~~PTeT 31 (330)
|.+--+++.+.++.+++.|++..+|+|=|||
T Consensus 1 ~~y~~I~t~~~l~~~~~~l~~~~~i~~DtE~ 31 (193)
T d1yt3a3 1 MNYQMITTDDALASLCEAVRAFPAIALDTEF 31 (193)
T ss_dssp CCCEEECSHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred CEEEEECCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9189989999999999998549969998763
No 6
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}
Probab=42.47 E-value=5.1 Score=17.56 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECC--CHHEEE
Q ss_conf 7999999999999975985999077--800040
Q gi|254780760|r 6 ITDSNALRKACEFLDAGLPIAIPTE--TVYGLA 36 (330)
Q Consensus 6 ~~d~~~i~~a~~~L~~G~~v~~PTe--TvYGlg 36 (330)
..|+.+|++|.+....|+.|.+|-- +||=-|
T Consensus 23 ~~~T~aIq~AIdac~~Gg~V~iP~G~~~vyltg 55 (376)
T d1bhea_ 23 STATSTIQKALNNCDQGKAVRLSAGSTSVFLSG 55 (376)
T ss_dssp SBCHHHHHHHHTTCCTTCEEEEECSSSSEEEES
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEE
T ss_conf 736999999998777999999969974569980
No 7
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=41.77 E-value=9.2 Score=15.89 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCEEEEECC----CCCHHHHHHHC-CCEECCCCCC
Q ss_conf 824344248----87888877422-7300133334
Q gi|254780760|r 187 KKVRILRPG----GLEIETLKRAI-SVELEYCVDE 216 (330)
Q Consensus 187 ~~~~IlR~G----~i~~~~i~~~l-~~~v~~~~~~ 216 (330)
.-+.++||| +|+..++++++ |..+......
T Consensus 25 ~di~~~RPg~~~~Gi~p~~~~~ii~Gkk~~~~i~~ 59 (72)
T d1vlia1 25 DNIAVLRPGQKPQGLHPRFFELLTSGVRAVRDIPA 59 (72)
T ss_dssp TTEEEECCTTSCCCBCGGGHHHHHTTCBCSSCBCT
T ss_pred HHEEEECCCCCCCCCCHHHHHHHHCCCEECCCCCC
T ss_conf 88678778888888598999997679488463389
No 8
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}
Probab=39.94 E-value=9.1 Score=15.90 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=25.7
Q ss_pred ECCCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 31799999999999997598599907780
Q gi|254780760|r 4 MSITDSNALRKACEFLDAGLPIAIPTETV 32 (330)
Q Consensus 4 ~~~~d~~~i~~a~~~L~~G~~v~~PTeTv 32 (330)
..+++++.++++++.|++.+.+++=|||.
T Consensus 8 ~~I~t~~~l~~~l~~l~~~~~~a~DtEt~ 36 (195)
T d1kfsa1 8 VTILDEETLKAWIAKLEKAPVFAFDTETD 36 (195)
T ss_dssp EECCSHHHHHHHHHHHHHSSSEEEEEEES
T ss_pred EEECCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 38798999999999983199099996637
No 9
>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.84 E-value=14 Score=14.69 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9999989999999997799899996388876108999899
Q gi|254780760|r 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 (330)
Q Consensus 276 ~eaA~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL 315 (330)
++. ..|+.--+.+++.|+..|++|.+|++ +...|.+++
T Consensus 159 ~~~-~~l~~da~~le~AGa~~ivlE~Vp~~-la~~It~~~ 196 (262)
T d1oy0a_ 159 DAA-EQTIADAIAVAEAGAFAVVMEMVPAE-LATQITGKL 196 (262)
T ss_dssp HHH-HHHHHHHHHHHHHTCSEEEEESCCHH-HHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHCCCEEEECCCCCHH-HHHHHHHHC
T ss_conf 026-67689999998689689850006376-789987407
No 10
>d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]}
Probab=29.99 E-value=9.4 Score=15.83 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=29.1
Q ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 06996269824344248878888774227300133334433223333210012
Q gi|254780760|r 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYA 231 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G~i~~~~i~~~l~~~v~~~~~~~~~~~SPG~~~~HYA 231 (330)
|++... +-.++.-++++|+..++.+++|..+.......+ +..+=| .++||
T Consensus 14 ~~lt~~-~l~~Krp~p~GI~p~~~~~iIGKk~kkdi~~d~-~L~~d~-ik~~~ 63 (64)
T d1opsa_ 14 TALTPA-MMEGKVTNPIGIPFAEMSQLVGKQVNTPVAKGQ-TLMPNM-VKTYA 63 (64)
T ss_dssp CBCCGG-GEEEECCSSCCSBGGGGGGTTTCBBSSCBCTTC-BCCGGG-BTTTT
T ss_pred CCCCHH-HEEEEECCCCCCCHHHHHHHCCHHHHCCCCCCC-CCCHHH-HHCCC
T ss_conf 892578-857871678870988999974857523306988-518999-41226
No 11
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}
Probab=28.58 E-value=15 Score=14.44 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9999989999999997799899996388876108999899
Q gi|254780760|r 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 (330)
Q Consensus 276 ~eaA~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL 315 (330)
.|. ..||..-+.+++.|+--|.+|.+|++ +...|.+++
T Consensus 156 ~e~-~~l~~~a~~le~AGa~~ivlE~Vp~~-va~~It~~~ 193 (260)
T d1o66a_ 156 GKA-QALLNDAKAHDDAGAAVVLMECVLAE-LAKKVTETV 193 (260)
T ss_dssp -CH-HHHHHHHHHHHHTTCSEEEEESCCHH-HHHHHHHHC
T ss_pred CHH-HHHHHHHHHHHHHHHHEHHHHHCCHH-HHHHHHHHH
T ss_conf 005-99999999999733233255440077-899998642
No 12
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=28.55 E-value=11 Score=15.42 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=5.2
Q ss_pred HHHHHHHHCCCEE
Q ss_conf 6766642014212
Q gi|254780760|r 123 FTKKLIETYGHPL 135 (330)
Q Consensus 123 ~~~~ll~~~~~Pi 135 (330)
.+.++|+..|..+
T Consensus 50 ~a~~~L~~~G~~v 62 (71)
T d2f06a1 50 KCIEVLKEKKVDL 62 (71)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCEE
T ss_conf 9999999879999
No 13
>d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]}
Probab=27.00 E-value=8.4 Score=16.12 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=10.7
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 763322415667666
Q gi|254780760|r 113 KTACFRVPCGFTKKL 127 (330)
Q Consensus 113 ~tvavRiP~h~~~~l 127 (330)
++.|+|+|.+++.++
T Consensus 8 NS~gvriP~~~l~~l 22 (44)
T d1mvfd_ 8 NSPAVRIPATLMQAL 22 (44)
T ss_dssp TEEEEECCHHHHHHT
T ss_pred CCEEEECCHHHHHHC
T ss_conf 653477169999876
No 14
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=26.77 E-value=12 Score=15.23 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCC
Q ss_conf 116555444576332241566766642014212123433348543
Q gi|254780760|r 103 DIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQIS 147 (330)
Q Consensus 103 ~i~~~~t~~~~tvavRiP~h~~~~ll~~~~~Piaa~SAN~sG~~S 147 (330)
.+-....+..+++|+|||- +=++ -|.||..||-++||-.+
T Consensus 110 ~vi~V~NG~rGt~GikI~L----~~I~-~g~pvlitsG~LSGCT~ 149 (295)
T d1hq0a_ 110 SIIRVSNSARGANGIKIAL----EEVQ-EGKPVIITSGNLSGCTT 149 (295)
T ss_dssp EEEEECCBTEEEEEEEEEG----GGCB-TTBCEEEECCCBSSCEE
T ss_pred EEEEECCCCCCCEEEEEEH----HHCC-CCCEEEEECCCCCCCEE
T ss_conf 3899448887523577778----8868-89748996776568679
No 15
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=22.79 E-value=8.2 Score=16.20 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=23.1
Q ss_pred EEECCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 44248878888774227300133334433223333210012453101
Q gi|254780760|r 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 (330)
Q Consensus 191 IlR~G~i~~~~i~~~l~~~v~~~~~~~~~~~SPG~~~~HYAP~~~V~ 237 (330)
+.+.|.+|..+|.+..|+ ++|.+|.||.=+-.++
T Consensus 14 ~~~~G~~ti~~Ia~~agv-------------s~~~iY~~F~~K~~L~ 47 (65)
T d2g7ga1 14 VDRDGDFRMPDLARHLNV-------------QVSSIYHHAKGRAAVV 47 (65)
T ss_dssp HHHHSSCCHHHHHHHTTS-------------CHHHHHTTSCHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCC-------------CCCCHHHCCCCHHHHH
T ss_conf 978679789999988570-------------6131311589999999
No 16
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.49 E-value=20 Score=13.72 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHCCCEEEEEC------CCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH--CC----
Q ss_conf 99999999997598599907------7800040279999999999997088810654999679899776420--05----
Q gi|254780760|r 10 NALRKACEFLDAGLPIAIPT------ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VD---- 77 (330)
Q Consensus 10 ~~i~~a~~~L~~G~~v~~PT------eTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~--~~---- 77 (330)
+.|++|.+.|++|+.|++=- |+-.-+.|..-+++.+.-+-+- ...|||..-+.+.++++.- +.
T Consensus 1 d~ie~ai~~lk~G~~Viv~Dd~~REnEgDlv~~Ae~~t~e~i~fm~~~-----~~Glic~a~~~~~~~~L~Lp~m~~~~~ 75 (219)
T d1snna_ 1 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKD-----AGGLICTALHPDICNKLGIPFMVDILE 75 (219)
T ss_dssp CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHH-----TEEEEEEEECHHHHHHHTCCCHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHC-----CCCCEEECCCHHHHHHCCCCCCCCHHH
T ss_conf 978999999987997999968998775148989565999999999972-----899778468899998769940012012
Q ss_pred --CHHHHHHHHCCCCC
Q ss_conf --20468998505887
Q gi|254780760|r 78 --PLSLHLAKLFWPGP 91 (330)
Q Consensus 78 --~~~~~l~~~fwPGp 91 (330)
.....+.+..+|..
T Consensus 76 ~~~~~~~~~~~~~~~~ 91 (219)
T d1snna_ 76 FASQKFKVLRELYPND 91 (219)
T ss_dssp HHTTTCHHHHHTCCTT
T ss_pred HHHHCCCCCCCCCCCC
T ss_conf 1101144211233456
No 17
>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.47 E-value=9.3 Score=15.86 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=8.0
Q ss_pred HCCCCCCCCCCCCC
Q ss_conf 06554211276645
Q gi|254780760|r 159 ICKEIPLIIDGGIS 172 (330)
Q Consensus 159 ~~~~i~~ildgg~~ 172 (330)
+.+.|| |.|||||
T Consensus 247 ~~gyVD-IFDgGP~ 259 (338)
T d1ylea1 247 TDNYID-IFDGGPT 259 (338)
T ss_dssp EEEEEC-TTTCCEE
T ss_pred CCCCEE-CCCCCCE
T ss_conf 589530-5278964
No 18
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=20.23 E-value=22 Score=13.42 Aligned_cols=30 Identities=10% Similarity=0.270 Sum_probs=22.6
Q ss_pred CEEEEECC--CCCHHHHHHHCCCEECCCCCCC
Q ss_conf 24344248--8788887742273001333344
Q gi|254780760|r 188 KVRILRPG--GLEIETLKRAISVELEYCVDET 217 (330)
Q Consensus 188 ~~~IlR~G--~i~~~~i~~~l~~~v~~~~~~~ 217 (330)
-+.++||| .|+..++.+++|..+.......
T Consensus 28 dl~~~RP~~ggi~p~~~~~viGk~~~~~i~~~ 59 (68)
T d2zdra1 28 NLWVKRPGNGDFSVNEYETLFGKVAACNIRKG 59 (68)
T ss_dssp TEEEESCSCSSSBGGGGGGGTTCBBSSCBCTT
T ss_pred HEEEECCCCCCCCHHHHHHHCCCEECCCCCCC
T ss_conf 96798887994898599886592264445894
Done!