RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780760|ref|YP_003065173.1| hypothetical protein
CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
         (330 letters)



>gnl|CDD|161684 TIGR00057, TIGR00057, Sua5/YciO/YrdC/YwlC family protein.  partial
           match to sua5, which is involved in regulation of
           translation initiation. 3' end of sua5 has matches to
           sua5, BS3690, and weakly to AF0781 and BB0734.
          Length = 201

 Score =  139 bits (353), Expect = 9e-34
 Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 5/197 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
               + +A + L  G  +  PT+TVYG+  D+ +  A+RRLY IK RP+  PL   VSD+
Sbjct: 7   SQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDL 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
           S ++K+A V   +  L K FWPGPLTLVL    T +I    +   KT   RVP      +
Sbjct: 67  SEIEKYAYVPDDAKRLMKKFWPGPLTLVLK--KTPEIPRRVSGKRKTIGIRVPDNPIALE 124

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G P+   SAN SG+ S T+V+  +   + K + LIID G    G  STI+++  +
Sbjct: 125 LLEELGKPIVATSANLSGKPSATDVEEAV-DELGKLVDLIIDAGPCLGGEPSTIIDLT-D 182

Query: 187 KKVRILRPGGLEIETLK 203
              ++LR G       K
Sbjct: 183 DTPKVLREGVGSEPIEK 199


>gnl|CDD|182603 PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarbamoyladenosine
           modification protein; Provisional.
          Length = 190

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 14/151 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +    +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI 
Sbjct: 1   MNNNLQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLIL 60

Query: 63  HVSDISMVKKHASVDPLSLHLAK-----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             ++   +K +  +D   L  A+       WPGP+T V    +TT      T    +   
Sbjct: 61  IAANYEQLKPY--IDDSMLTDAQRETIFSCWPGPVTFVFPAPATTP--RWLTGRFDSLAV 116

Query: 118 RV---PCGFTKKLIETYGHPLAIPSANRSGQ 145
           RV   P      L + YG PL   SAN SG 
Sbjct: 117 RVTDHP--LVVALCQAYGKPLVSTSANLSGL 145


>gnl|CDD|183245 PRK11630, PRK11630, hypothetical protein; Provisional.
          Length = 206

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 ALGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDTP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 VVVREG 198


>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
          Length = 256

 Score = 29.3 bits (66), Expect = 1.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           ++I LI+DG +  +G  + I   +  + VRILRP
Sbjct: 205 RDINLIVDGVL--VGKTNRITVKKSRRYVRILRP 236


>gnl|CDD|184844 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 275

 Score = 28.7 bits (64), Expect = 2.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVD--SRNPTAIRRLYEIKKRPAMN 58
           KA E L+  L + IPT T++  + D  SR+P  +  L  + +R A  
Sbjct: 73  KAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREARR 119


>gnl|CDD|163247 TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific,
           Pseudomonas-type.  Members of this protein family are
           bacterial, phosphatidylcholine-hydrolyzing phospholipase
           C enzymes, with a characteristic domain architecture as
           found in hemolytyic (PlcH) and nonhemolytic (PlcN)
           secreted enzymes of Pseudomonas aeruginosa. PlcH
           hydrolyzes phosphatidylcholine to diacylglycerol and
           phosphocholine, but unlike PlcN can also hydrolyze
           sphingomyelin to ceramide ((N-acylsphingosine)) and
           phosphocholine. Members of this family share the
           twin-arginine signal sequence for Sec-independent
           transport across the plasma membrane. PlcH is secreted
           as a heterodimer with a small chaperone, PlcR, encoded
           immediately downstream.
          Length = 690

 Score = 27.7 bits (62), Expect = 3.8
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)

Query: 135 LAIPSANRSGQISITNVKHI 154
           LAIP+  R+G I   +V+H+
Sbjct: 30  LAIPANRRTGTIQ--DVEHV 47


>gnl|CDD|178879 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.
          Length = 196

 Score = 27.7 bits (63), Expect = 4.3
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 9/34 (26%)

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           +ENA+I        K + AA        +ADDSG
Sbjct: 46  VENALI--------KARHAA-KATGLPALADDSG 70


>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
          Length = 200

 Score = 27.5 bits (62), Expect = 4.6
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 9/33 (27%)

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           ENAI+        K + AA    N   IADDSG
Sbjct: 49  ENAIL--------KAEAAA-KALNKPVIADDSG 72


>gnl|CDD|179952 PRK05170, PRK05170, hypothetical protein; Provisional.
          Length = 147

 Score = 27.6 bits (62), Expect = 4.7
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 44  AIRRLYEIKKRPAMNPLIC------HVSDISM---VKKHASVDPLSLHLAKLFWPGPL 92
           A R L E K  P+ +PLI       H + IS+   V   + VD    H+  + WP   
Sbjct: 92  AYRLLAEGKDLPSWHPLITGSKEAVHKAGISVRGRVVSESEVDDWEDHI--VNWPLWA 147


>gnl|CDD|179400 PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional.
          Length = 137

 Score = 26.8 bits (60), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 9/41 (21%)

Query: 275 LKEAAFNLFN---------YMKIADDSGASSIAFSSIPNHG 306
           L EA F + N         ++  A ++ A +I  SS+  HG
Sbjct: 27  LTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHG 67


>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
           dehydrogenase/ 5,10-methylene-tetrahydrofolate
           cyclohydrolase; Provisional.
          Length = 287

 Score = 26.7 bits (59), Expect = 8.5
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 21/63 (33%)

Query: 132 GHPLAIPSANRSGQISI---------------------TNVKHILSSSICKEIPLIIDGG 170
           G P+A    NR+  +S+                     T VKH++ + + KE  +I D G
Sbjct: 177 GKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVG 236

Query: 171 ISK 173
           I+K
Sbjct: 237 ITK 239


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,282,538
Number of extensions: 331815
Number of successful extensions: 586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 14
Length of query: 330
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 236
Effective length of database: 3,963,321
Effective search space: 935343756
Effective search space used: 935343756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)