RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] (330 letters) >gnl|CDD|161684 TIGR00057, TIGR00057, Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734. Length = 201 Score = 139 bits (353), Expect = 9e-34 Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 5/197 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +A + L G + PT+TVYG+ D+ + A+RRLY IK RP+ PL VSD+ Sbjct: 7 SQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDL 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 S ++K+A V + L K FWPGPLTLVL T +I + KT RVP + Sbjct: 67 SEIEKYAYVPDDAKRLMKKFWPGPLTLVLK--KTPEIPRRVSGKRKTIGIRVPDNPIALE 124 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G P+ SAN SG+ S T+V+ + + K + LIID G G STI+++ + Sbjct: 125 LLEELGKPIVATSANLSGKPSATDVEEAV-DELGKLVDLIIDAGPCLGGEPSTIIDLT-D 182 Query: 187 KKVRILRPGGLEIETLK 203 ++LR G K Sbjct: 183 DTPKVLREGVGSEPIEK 199 >gnl|CDD|182603 PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional. Length = 190 Score = 62.4 bits (152), Expect = 2e-10 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 14/151 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI Sbjct: 1 MNNNLQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLIL 60 Query: 63 HVSDISMVKKHASVDPLSLHLAK-----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ +K + +D L A+ WPGP+T V +TT T + Sbjct: 61 IAANYEQLKPY--IDDSMLTDAQRETIFSCWPGPVTFVFPAPATTP--RWLTGRFDSLAV 116 Query: 118 RV---PCGFTKKLIETYGHPLAIPSANRSGQ 145 RV P L + YG PL SAN SG Sbjct: 117 RVTDHP--LVVALCQAYGKPLVSTSANLSGL 145 >gnl|CDD|183245 PRK11630, PRK11630, hypothetical protein; Provisional. Length = 206 Score = 44.9 bits (106), Expect = 3e-05 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 ALGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDTP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 VVVREG 198 >gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional. Length = 256 Score = 29.3 bits (66), Expect = 1.5 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 ++I LI+DG + +G + I + + VRILRP Sbjct: 205 RDINLIVDGVL--VGKTNRITVKKSRRYVRILRP 236 >gnl|CDD|184844 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional. Length = 275 Score = 28.7 bits (64), Expect = 2.0 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVD--SRNPTAIRRLYEIKKRPAMN 58 KA E L+ L + IPT T++ + D SR+P + L + +R A Sbjct: 73 KAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREARR 119 >gnl|CDD|163247 TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream. Length = 690 Score = 27.7 bits (62), Expect = 3.8 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%) Query: 135 LAIPSANRSGQISITNVKHI 154 LAIP+ R+G I +V+H+ Sbjct: 30 LAIPANRRTGTIQ--DVEHV 47 >gnl|CDD|178879 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed. Length = 196 Score = 27.7 bits (63), Expect = 4.3 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 9/34 (26%) Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 +ENA+I K + AA +ADDSG Sbjct: 46 VENALI--------KARHAA-KATGLPALADDSG 70 >gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional. Length = 200 Score = 27.5 bits (62), Expect = 4.6 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 9/33 (27%) Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 ENAI+ K + AA N IADDSG Sbjct: 49 ENAIL--------KAEAAA-KALNKPVIADDSG 72 >gnl|CDD|179952 PRK05170, PRK05170, hypothetical protein; Provisional. Length = 147 Score = 27.6 bits (62), Expect = 4.7 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 11/58 (18%) Query: 44 AIRRLYEIKKRPAMNPLIC------HVSDISM---VKKHASVDPLSLHLAKLFWPGPL 92 A R L E K P+ +PLI H + IS+ V + VD H+ + WP Sbjct: 92 AYRLLAEGKDLPSWHPLITGSKEAVHKAGISVRGRVVSESEVDDWEDHI--VNWPLWA 147 >gnl|CDD|179400 PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional. Length = 137 Score = 26.8 bits (60), Expect = 7.0 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 9/41 (21%) Query: 275 LKEAAFNLFN---------YMKIADDSGASSIAFSSIPNHG 306 L EA F + N ++ A ++ A +I SS+ HG Sbjct: 27 LTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHG 67 >gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional. Length = 287 Score = 26.7 bits (59), Expect = 8.5 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 21/63 (33%) Query: 132 GHPLAIPSANRSGQISI---------------------TNVKHILSSSICKEIPLIIDGG 170 G P+A NR+ +S+ T VKH++ + + KE +I D G Sbjct: 177 GKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVG 236 Query: 171 ISK 173 I+K Sbjct: 237 ITK 239 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,282,538 Number of extensions: 331815 Number of successful extensions: 586 Number of sequences better than 10.0: 1 Number of HSP's gapped: 581 Number of HSP's successfully gapped: 14 Length of query: 330 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 236 Effective length of database: 3,963,321 Effective search space: 935343756 Effective search space used: 935343756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.8 bits)