BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780760|ref|YP_003065173.1| hypothetical protein
CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
         (330 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 330

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL
Sbjct: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP
Sbjct: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI
Sbjct: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA
Sbjct: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS
Sbjct: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300

Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330
           SIPNHGLGIAINNRLERAAAPRNQSQRIVP
Sbjct: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1576

 Score = 24.3 bits (51), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 135  LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            +A+ SA R G++++ N   +LSS   + + L++
Sbjct: 1152 IALASAMRDGRLTLENRNKLLSSMTSEVVELVL 1184


>gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 396

 Score = 23.9 bits (50), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK----EIPL 165
           T+KLIET     A+P  +R   ++  N +H  + ++ K    EIP+
Sbjct: 49  TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPI 94


>gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 473

 Score = 23.1 bits (48), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 9/47 (19%)

Query: 253 GNVPIKNIENAIISL---------NLSKTGKLKEAAFNLFNYMKIAD 290
           G +P KN ++ I+S+         +L       +A  NLFN  KIA+
Sbjct: 81  GQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAE 127


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,080
Number of Sequences: 1233
Number of extensions: 7833
Number of successful extensions: 18
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 330
length of database: 328,796
effective HSP length: 74
effective length of query: 256
effective length of database: 237,554
effective search space: 60813824
effective search space used: 60813824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)