HHsearch alignment for GI: 254780761 and conserved domain: pfam00941

>pfam00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase.
Probab=97.48  E-value=0.00019  Score=47.28  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf             58995499899999999998729829997588777654010488866999763002774211237345511442002222
Q gi|254780761|r   44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQ  123 (473)
Q Consensus        44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~  123 (473)
T Consensus         3 f~y~~P~sl~ea~~ll~~---~~-~a~ilAGGTdl~~~~~~~~~~~~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~l~   78 (171)
T pfam00941         3 FTYYRPASLEEALALLAK---GP-DAKLVAGGTSLGPEMKLRLARPPVLIDINGIPELRGIEETGDGLEIGAAVTLTELI   78 (171)
T ss_pred             CEEECCCCHHHHHHHHHH---CC-CCEEEECCCHHHHHHHCCCCCCCEEEEHHHCCCCCEEEEECCEEEEEEEEEHHHHH
T ss_conf             559778999999999966---99-98899747628999743768988599856778765389819989993321699976


Q ss_pred             HH--CCCCCC-------CCCCCCCCCCCCCCHHHHHCCC
Q ss_conf             10--012322-------2344334321113112221235
Q gi|254780761|r  124 KI--AEKNHR-------LFPLSLPSEKYCHIGGNLATNA  153 (473)
Q Consensus       124 ~~--l~~~g~-------~~p~~p~s~~~aTvGG~ia~~~  153 (473)
T Consensus        79 ~~~~~~~~~p~l~~a~~~i-a~~qIRn~aTiGGni~~a~  116 (171)
T pfam00941        79 DSPLVAEVFPALAEALRKI-ASPQIRNVATIGGNIANAS  116 (171)
T ss_pred             HCHHHHHHHHHHHHHHHHC-CCHHHEEEEEECCEECCCC
T ss_conf             3966665649999998713-8975745777624310366