HHsearch alignment for GI: 254780761 and conserved domain: pfam00941
>pfam00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase.
Probab=97.48 E-value=0.00019 Score=47.28 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 58995499899999999998729829997588777654010488866999763002774211237345511442002222
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQ 123 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~ 123 (473)
T Consensus 3 f~y~~P~sl~ea~~ll~~---~~-~a~ilAGGTdl~~~~~~~~~~~~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~l~ 78 (171)
T pfam00941 3 FTYYRPASLEEALALLAK---GP-DAKLVAGGTSLGPEMKLRLARPPVLIDINGIPELRGIEETGDGLEIGAAVTLTELI 78 (171)
T ss_pred CEEECCCCHHHHHHHHHH---CC-CCEEEECCCHHHHHHHCCCCCCCEEEEHHHCCCCCEEEEECCEEEEEEEEEHHHHH
T ss_conf 559778999999999966---99-98899747628999743768988599856778765389819989993321699976
Q ss_pred HH--CCCCCC-------CCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 10--012322-------2344334321113112221235
Q gi|254780761|r 124 KI--AEKNHR-------LFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 124 ~~--l~~~g~-------~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
T Consensus 79 ~~~~~~~~~p~l~~a~~~i-a~~qIRn~aTiGGni~~a~ 116 (171)
T pfam00941 79 DSPLVAEVFPALAEALRKI-ASPQIRNVATIGGNIANAS 116 (171)
T ss_pred HCHHHHHHHHHHHHHHHHC-CCHHHEEEEEECCEECCCC
T ss_conf 3966665649999998713-8975745777624310366