Query gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 473
No_of_seqs 138 out of 5990
Neff 9.1
Searched_HMMs 23785
Date Tue May 31 16:08:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780761.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 100.0 0 0 706.0 29.7 463 2-473 88-584 (584)
2 1f0x_A DLDH, D-lactate dehydro 100.0 0 0 618.9 25.3 436 6-471 10-558 (571)
3 1wvf_A 4-cresol dehydrogenase 100.0 0 0 553.4 35.7 453 6-472 18-512 (520)
4 1e8g_A Vanillyl-alcohol oxidas 100.0 0 0 548.7 30.8 453 6-472 22-546 (560)
5 2exr_A Cytokinin dehydrogenase 100.0 0 0 459.0 23.3 448 10-472 28-518 (524)
6 1w1o_A Cytokinin dehydrogenase 100.0 0 0 441.6 27.0 451 7-473 33-532 (534)
7 2ipi_A Aclacinomycin oxidoredu 100.0 0 0 364.7 17.4 199 32-234 45-246 (521)
8 3fw9_A Reticuline oxidase; BI- 100.0 0 0 361.3 19.7 222 14-242 10-239 (495)
9 2bvf_A 6-hydroxy-D-nicotine ox 100.0 0 0 347.8 26.0 404 29-468 25-449 (459)
10 2wdx_A Putative hexose oxidase 100.0 0 0 352.3 14.3 206 24-233 39-247 (523)
11 2i0k_A Oxidoreductase; MIX alp 100.0 0 0 332.5 11.4 193 33-231 26-232 (561)
12 2vfr_A Xylitol oxidase, aldito 100.0 0 0 323.2 15.7 181 33-228 11-191 (422)
13 1zr6_A Glucooligosaccharide ox 100.0 0 0 315.4 20.3 211 11-231 8-222 (503)
14 3js8_A Cholesterol oxidase; ch 100.0 0 0 310.6 9.0 197 30-231 18-228 (540)
15 2yvs_A Glycolate oxidase subun 100.0 2.9E-34 1.2E-38 233.1 1.7 130 102-236 1-130 (219)
16 1hsk_A UDP-N-acetylenolpyruvoy 99.7 2.4E-16 1E-20 120.6 10.5 198 2-221 12-210 (326)
17 1uxy_A MURB, uridine diphospho 99.6 5.9E-14 2.5E-18 105.6 12.1 171 39-223 11-184 (340)
18 3i99_A UDP-N-acetylenolpyruvoy 99.5 8.8E-14 3.7E-18 104.5 9.1 177 28-222 19-199 (357)
19 2gqt_A UDP-N-acetylenolpyruvyl 99.0 1.6E-09 6.8E-14 77.7 10.4 154 40-222 20-174 (268)
20 3hrd_C Nicotinate dehydrogenas 97.9 6.2E-06 2.6E-10 55.2 3.9 152 43-218 3-177 (296)
21 1ffv_C CUTM, flavoprotein of c 97.9 3.5E-05 1.5E-09 50.5 7.7 154 42-218 4-175 (287)
22 3nrz_B Xanthine dehydrogenase/ 97.8 2E-05 8.4E-10 52.1 4.6 106 44-153 11-133 (305)
23 1rm6_B 4-hydroxybenzoyl-COA re 97.7 2.3E-05 9.7E-10 51.7 4.3 105 43-153 6-120 (324)
24 1t3q_C Quinoline 2-oxidoreduct 97.6 7.4E-05 3.1E-09 48.5 5.5 108 42-153 4-119 (288)
25 1n62_C Carbon monoxide dehydro 97.6 9E-05 3.8E-09 48.0 5.8 108 42-153 4-120 (288)
26 2w3s_A Xanthine dehydrogenase; 97.6 0.00014 6.1E-09 46.6 6.6 104 46-153 180-289 (462)
27 1v97_A XD, xanthine dehydrogen 96.8 0.00051 2.2E-08 43.2 2.7 105 45-153 235-356 (1332)
28 2dnh_A Bruno-like 5, RNA bindi 84.1 0.67 2.8E-05 23.6 3.1 57 185-245 21-77 (105)
29 2do0_A HnRNP M, heterogeneous 83.2 0.75 3.2E-05 23.3 3.1 57 185-245 21-77 (114)
30 1x5o_A RNA binding motif, sing 81.1 1.2 5.1E-05 22.0 3.5 57 185-245 31-87 (114)
31 2ywk_A Putative RNA-binding pr 79.7 1.2 5.1E-05 22.0 3.1 56 186-245 23-78 (95)
32 2fy1_A RNA-binding motif prote 79.7 1 4.2E-05 22.5 2.7 57 185-245 13-69 (116)
33 2pls_A CBS domain protein; APC 79.4 0.89 3.7E-05 22.9 2.3 46 104-152 4-49 (86)
34 2f3j_A RNA and export factor b 79.2 0.85 3.6E-05 23.0 2.2 57 185-245 94-150 (177)
35 2cqi_A Nucleolysin TIAR; RNA r 77.8 1.1 4.4E-05 22.4 2.3 56 185-245 21-76 (103)
36 1yht_A DSPB; beta barrel, hydr 77.7 1.7 7E-05 21.1 3.3 23 50-72 92-114 (367)
37 2do4_A Squamous cell carcinoma 77.4 1.5 6.4E-05 21.4 3.1 57 185-245 23-79 (100)
38 2cpi_A CCR4-NOT transcription 77.4 2.9 0.00012 19.7 4.5 69 170-245 9-84 (111)
39 2div_A TRNA selenocysteine ass 77.4 0.97 4.1E-05 22.6 2.1 57 185-245 15-73 (99)
40 1no8_A ALY; RBD, REF1-I, BEF, 75.9 1.2 4.9E-05 22.1 2.1 57 185-245 34-90 (106)
41 1whw_A Hypothetical protein ri 75.5 1.3 5.4E-05 21.9 2.3 57 185-245 14-71 (99)
42 2d9p_A Polyadenylate-binding p 75.0 2.1 9E-05 20.5 3.3 56 185-245 21-76 (103)
43 1wez_A HnRNP H', FTP-3, hetero 74.9 2.4 0.0001 20.1 3.5 60 177-242 14-73 (102)
44 1whx_A Hypothetical protein ri 74.6 1.2 5.1E-05 22.0 1.9 52 185-245 16-67 (111)
45 2dnz_A Probable RNA-binding pr 73.9 2.4 0.0001 20.2 3.3 57 185-245 11-68 (95)
46 2cpz_A CUG triplet repeat RNA- 73.0 2.1 8.9E-05 20.5 2.9 57 185-245 31-88 (115)
47 2cqg_A TDP-43, TAR DNA-binding 72.9 2.3 9.5E-05 20.3 3.0 55 185-243 21-76 (103)
48 3ex7_B RNA-binding protein 8A; 72.8 1.7 7E-05 21.1 2.3 57 185-245 28-85 (126)
49 2dhg_A TRNA selenocysteine ass 72.5 1.7 7.1E-05 21.1 2.3 57 185-245 15-72 (104)
50 2khc_A Testis-specific RNP-typ 72.0 4.3 0.00018 18.5 5.1 70 171-245 33-103 (118)
51 2gjx_A Beta-hexosaminidase alp 71.6 2.9 0.00012 19.6 3.3 15 452-466 476-490 (507)
52 2cqp_A RNA-binding protein 12; 71.4 2.6 0.00011 20.0 3.0 57 185-245 21-78 (98)
53 1owx_A Lupus LA protein, SS-B, 71.4 2.8 0.00012 19.8 3.2 60 176-244 16-76 (121)
54 2cqd_A RNA-binding region cont 71.4 1.8 7.7E-05 20.9 2.3 56 185-244 23-79 (116)
55 1p27_B RNA-binding protein 8A; 70.2 3 0.00012 19.6 3.1 57 185-245 29-86 (106)
56 2cqc_A Arginine/serine-rich sp 69.9 2.7 0.00012 19.8 2.9 57 185-245 21-78 (95)
57 1x4e_A RNA binding motif, sing 69.8 4.4 0.00019 18.5 3.9 57 185-245 11-68 (85)
58 2voo_A Lupus LA protein; RNA-b 69.1 3.1 0.00013 19.5 3.0 52 187-242 117-168 (193)
59 1c7s_A Beta-N-acetylhexosamini 69.0 3.3 0.00014 19.3 3.1 19 357-375 480-498 (858)
60 1s79_A Lupus LA protein; RRM, 68.8 2.8 0.00012 19.7 2.8 53 186-242 18-70 (103)
61 2dgo_A Cytotoxic granule-assoc 68.3 3.4 0.00014 19.2 3.1 57 185-245 21-78 (115)
62 2err_A Ataxin-2-binding protei 68.1 3 0.00013 19.6 2.8 56 185-245 35-90 (109)
63 2ek1_A RNA-binding protein 12; 68.0 3.4 0.00014 19.2 3.0 57 185-245 21-78 (95)
64 2dnq_A RNA-binding protein 4B; 68.0 2.6 0.00011 19.9 2.4 50 185-245 14-63 (90)
65 2cq0_A Eukaryotic translation 67.9 4.8 0.0002 18.3 3.8 57 185-245 21-78 (103)
66 2hgl_A HNRPF protein, heteroge 67.8 5.3 0.00022 18.0 4.1 64 178-243 44-107 (136)
67 1hd0_A Protein (heterogeneous 67.8 2.3 9.7E-05 20.3 2.1 53 186-242 6-59 (75)
68 1x4b_A Heterogeneous nuclear r 67.7 3 0.00013 19.5 2.7 54 185-242 33-87 (116)
69 2cpy_A RNA-binding protein 12; 67.6 5.4 0.00023 18.0 4.2 54 185-242 21-75 (114)
70 1x4a_A Splicing factor, argini 67.6 3.4 0.00014 19.2 2.9 55 185-245 28-82 (109)
71 2epl_X N-acetyl-beta-D-glucosa 67.3 4.1 0.00017 18.7 3.3 63 5-72 100-164 (627)
72 1rk8_A CG8781-PA, CG8781-PA pr 67.2 3.7 0.00015 19.0 3.1 57 185-245 78-135 (165)
73 2cph_A RNA binding motif prote 67.1 2.5 0.00011 20.0 2.2 56 185-244 21-78 (107)
74 1u6f_A Tcubp1, RNA-binding pro 67.1 2.3 9.5E-05 20.3 2.0 57 185-245 48-105 (139)
75 3gh5_A HEX1, beta-hexosaminida 67.1 3.8 0.00016 18.9 3.1 16 451-466 502-517 (525)
76 2e5h_A Zinc finger CCHC-type a 66.9 4.2 0.00018 18.6 3.3 57 185-245 22-79 (94)
77 2dgt_A RNA-binding protein 30; 66.5 2.4 0.0001 20.2 2.0 49 186-245 17-65 (92)
78 2dgw_A Probable RNA-binding pr 66.4 3.3 0.00014 19.3 2.7 53 185-242 16-68 (91)
79 1h2v_Z 20 kDa nuclear CAP bind 66.1 4.2 0.00018 18.6 3.2 57 185-245 45-102 (156)
80 1x4c_A Splicing factor, argini 66.1 3.4 0.00014 19.2 2.7 51 185-245 21-71 (108)
81 2wbr_A GW182, gawky, LD47780P; 65.8 4.6 0.00019 18.4 3.3 52 185-245 13-64 (89)
82 1now_A Beta-hexosaminidase bet 65.7 4.6 0.0002 18.4 3.3 13 454-466 480-492 (507)
83 2cq3_A RNA-binding protein 9; 65.6 4.7 0.0002 18.3 3.4 56 185-245 21-76 (103)
84 2p4p_A Hypothetical protein HD 65.6 3.4 0.00014 19.2 2.6 43 105-152 5-47 (86)
85 2hvz_A Splicing factor, argini 65.2 2.4 0.0001 20.1 1.8 52 186-245 7-58 (101)
86 2dgv_A HnRNP M, heterogeneous 64.4 3.3 0.00014 19.3 2.4 55 186-245 15-69 (92)
87 2cqb_A Peptidyl-prolyl CIS-tra 64.3 3 0.00013 19.5 2.2 57 185-245 18-75 (102)
88 3b4d_A Polyadenylate-binding p 64.3 3.8 0.00016 18.9 2.7 54 185-242 11-65 (96)
89 2jrs_A RNA-binding protein 39; 63.8 4.5 0.00019 18.4 3.0 57 185-245 32-89 (108)
90 3bs9_A Nucleolysin TIA-1 isofo 63.7 4.7 0.0002 18.3 3.1 57 185-245 12-69 (87)
91 3lae_A UPF0053 protein HI0107; 63.5 3.1 0.00013 19.4 2.1 41 106-153 6-46 (81)
92 2cpj_A Non-POU domain-containi 63.2 4.1 0.00017 18.7 2.7 52 185-245 21-72 (99)
93 3mdf_A Peptidyl-prolyl CIS-tra 62.8 3.4 0.00014 19.2 2.2 57 185-245 13-70 (85)
94 2cpf_A RNA binding motif prote 62.8 4.1 0.00017 18.7 2.6 57 185-245 11-71 (98)
95 1x5s_A Cold-inducible RNA-bind 62.5 3.2 0.00013 19.4 2.0 63 177-245 12-75 (102)
96 1wex_A Hypothetical protein (r 62.1 4.2 0.00018 18.6 2.6 52 185-245 21-72 (104)
97 2dgs_A DAZ-associated protein 62.0 5 0.00021 18.2 2.9 53 186-242 17-70 (99)
98 2dgp_A Bruno-like 4, RNA bindi 61.4 2.6 0.00011 19.9 1.4 57 185-245 19-76 (106)
99 2cq1_A PTB-like protein L; RRM 61.2 5.3 0.00022 18.0 3.0 52 185-245 21-72 (101)
100 2ku7_A MLL1 PHD3-CYP33 RRM chi 60.9 4.3 0.00018 18.6 2.4 57 185-245 69-126 (140)
101 1x4h_A RNA-binding protein 28; 60.3 4.2 0.00018 18.6 2.3 57 185-245 21-78 (111)
102 1oo0_B CG8781-PA, drosophila Y 60.3 4.6 0.00019 18.4 2.5 57 185-245 32-89 (110)
103 2i2y_A Fusion protein consists 60.3 3.7 0.00016 19.0 2.0 53 185-245 79-131 (150)
104 1uaw_A Mouse-musashi-1; RNP-ty 60.3 5.3 0.00022 18.0 2.8 54 185-242 6-60 (77)
105 3ded_A Probable hemolysin; str 60.1 4.5 0.00019 18.5 2.4 47 101-152 29-76 (113)
106 1why_A Hypothetical protein ri 59.5 5 0.00021 18.1 2.6 52 185-245 23-74 (97)
107 2db1_A Heterogeneous nuclear r 59.4 7.6 0.00032 17.0 5.6 61 180-242 19-79 (118)
108 3md1_A Nuclear and cytoplasmic 59.1 6.5 0.00027 17.4 3.1 57 185-245 7-64 (83)
109 2cq4_A RNA binding motif prote 59.1 5.8 0.00025 17.7 2.9 54 185-242 31-85 (114)
110 2ki2_A SS-DNA binding protein 59.0 4.5 0.00019 18.5 2.3 54 185-243 7-61 (90)
111 2dnm_A SRP46 splicing factor; 58.8 4.4 0.00019 18.5 2.2 57 185-245 19-76 (103)
112 2f9d_A PRE-mRNA branch site pr 58.2 5.2 0.00022 18.0 2.5 55 185-245 24-78 (125)
113 2e5i_A Heterogeneous nuclear r 58.2 4.9 0.00021 18.2 2.4 53 186-246 32-84 (124)
114 2dng_A Eukaryotic translation 57.9 5.3 0.00022 18.0 2.5 53 185-242 21-74 (103)
115 2hgm_A HNRPF protein, heteroge 57.5 6.4 0.00027 17.5 2.9 54 185-242 48-102 (126)
116 2rk5_A Putative hemolysin; str 57.4 4.7 0.0002 18.3 2.2 39 107-152 6-44 (87)
117 2fc8_A NCL protein; structure 57.2 7.6 0.00032 17.0 3.2 55 185-245 21-75 (102)
118 2dis_A Unnamed protein product 57.2 3.2 0.00014 19.3 1.3 57 185-245 14-73 (109)
119 2dh8_A DAZ-associated protein 57.0 5.5 0.00023 17.9 2.5 54 185-242 22-76 (105)
120 2e44_A Insulin-like growth fac 56.9 4.5 0.00019 18.4 2.0 55 185-245 21-75 (96)
121 2aym_A U1 small nuclear ribonu 56.9 6.7 0.00028 17.4 2.9 53 185-245 14-66 (83)
122 2kvi_A Nuclear polyadenylated 56.8 6.5 0.00027 17.4 2.8 49 186-245 17-66 (96)
123 2kn4_A Immunoglobulin G-bindin 56.7 3.8 0.00016 18.9 1.6 57 185-245 76-133 (158)
124 2bz2_A Negative elongation fac 55.9 5.4 0.00023 18.0 2.2 45 192-245 50-94 (121)
125 2dgu_A Heterogeneous nuclear r 55.3 4.4 0.00018 18.5 1.7 50 185-245 17-66 (103)
126 2hgn_A Heterogeneous nuclear r 55.2 3.1 0.00013 19.5 0.9 53 185-242 52-104 (139)
127 1x5p_A Negative elongation fac 55.0 6 0.00025 17.6 2.4 44 193-245 27-70 (97)
128 2jvo_A Nucleolar protein 3; nu 54.6 6 0.00025 17.7 2.3 49 186-245 38-86 (108)
129 2x1f_A MRNA 3'-END-processing 54.1 6.1 0.00026 17.6 2.3 57 185-245 8-65 (96)
130 1wg1_A KIAA1579 protein, homol 52.1 3.8 0.00016 18.9 1.0 51 185-245 11-61 (88)
131 3cw1_K U1 small nuclear ribonu 51.8 7.1 0.0003 17.2 2.3 57 185-245 108-165 (216)
132 2ad9_A Polypyrimidine tract-bi 51.8 8.2 0.00035 16.8 2.7 51 185-244 37-87 (119)
133 2v82_A 2-dehydro-3-deoxy-6-pho 51.3 10 0.00043 16.2 5.8 35 37-71 2-37 (212)
134 2jgd_A 2-oxoglutarate dehydrog 51.3 10 0.00043 16.2 3.2 47 21-68 394-443 (933)
135 1x4f_A Matrin 3; structural ge 51.1 10 0.00044 16.2 3.4 58 178-245 25-83 (112)
136 1sjr_A Polypyrimidine tract-bi 51.1 6.3 0.00027 17.5 2.0 54 185-245 52-105 (164)
137 3d2w_A TAR DNA-binding protein 50.9 5 0.00021 18.2 1.4 50 185-242 17-66 (89)
138 1x4d_A Matrin 3; structural ge 50.4 11 0.00045 16.1 3.1 43 192-243 29-71 (102)
139 2jwn_A Embryonic polyadenylate 50.2 9.1 0.00038 16.5 2.7 54 185-242 42-96 (124)
140 2r2z_A Hemolysin; APC85144, st 49.8 7.4 0.00031 17.1 2.2 39 107-152 14-52 (93)
141 1fht_A U1A117, U1 small nuclea 49.6 5.1 0.00021 18.1 1.3 59 185-245 14-72 (116)
142 1p1t_A Cleavage stimulation fa 49.5 7.7 0.00032 17.0 2.2 56 186-245 15-71 (104)
143 2oai_A Hemolysin; PFAM03471, s 49.3 6.3 0.00026 17.5 1.7 43 107-153 16-58 (94)
144 3p5t_L Cleavage and polyadenyl 48.9 5.7 0.00024 17.8 1.5 57 185-245 7-66 (90)
145 2p13_A CBS domain; alpha-beta 48.4 7.9 0.00033 16.9 2.1 42 107-153 13-54 (90)
146 2dnp_A RNA-binding protein 14; 48.3 6.4 0.00027 17.5 1.7 50 185-245 15-64 (90)
147 1wel_A RNA-binding protein 12; 47.8 8 0.00034 16.9 2.1 54 185-242 31-85 (124)
148 2d9o_A DNAJ (HSP40) homolog, s 47.7 8.6 0.00036 16.7 2.2 45 193-245 31-75 (100)
149 1x5u_A Splicing factor 3B subu 47.5 9.1 0.00038 16.5 2.3 57 185-245 21-78 (105)
150 3nmr_A Cugbp ELAV-like family 47.5 12 0.0005 15.8 3.6 54 186-243 10-66 (175)
151 1wf1_A RNA-binding protein RAL 47.2 7.7 0.00032 17.0 1.9 44 191-245 40-83 (110)
152 2ghp_A U4/U6 snRNA-associated 46.9 12 0.00048 15.9 2.8 55 185-244 47-101 (292)
153 2e5g_A U6 snRNA-specific termi 46.6 12 0.00049 15.8 2.8 50 185-242 14-63 (94)
154 2nqw_A CBS domain protein; PFA 46.6 5.9 0.00025 17.7 1.3 43 107-152 13-56 (93)
155 1iqt_A AUF1, heterogeneous nuc 46.4 3.8 0.00016 18.9 0.2 54 186-243 6-60 (75)
156 3md3_A Nuclear and cytoplasmic 46.0 12 0.00052 15.7 3.1 55 186-244 7-61 (166)
157 1wg5_A Heterogeneous nuclear r 45.5 13 0.00053 15.6 2.9 54 185-242 21-75 (104)
158 1x5t_A Splicing factor 3B subu 45.4 9 0.00038 16.5 2.0 57 185-245 11-69 (96)
159 3egn_A RNA-binding protein 40; 45.0 4.3 0.00018 18.6 0.3 57 185-245 51-113 (143)
160 2e5j_A Methenyltetrahydrofolat 44.8 8.3 0.00035 16.8 1.8 53 185-245 25-77 (97)
161 2ytc_A PRE-mRNA-splicing facto 44.7 11 0.00044 16.1 2.3 52 185-245 18-69 (85)
162 2fc9_A NCL protein; structure 44.5 11 0.00045 16.1 2.3 54 185-245 21-74 (101)
163 2xnq_A Nuclear polyadenylated 43.6 13 0.00054 15.6 2.6 49 186-245 29-78 (97)
164 1g94_A Alpha-amylase; beta-alp 43.4 12 0.00049 15.9 2.3 65 6-71 14-83 (448)
165 1x4g_A Nucleolysin TIAR; struc 43.0 10 0.00043 16.2 2.0 52 185-245 31-82 (109)
166 2dnn_A RNA-binding protein 12; 42.6 14 0.00059 15.3 2.9 53 185-242 22-74 (109)
167 2dgx_A KIAA0430 protein; RRM d 42.4 7.8 0.00033 16.9 1.3 59 185-245 15-73 (96)
168 2bfd_B 2-oxoisovalerate dehydr 42.3 14 0.0006 15.3 3.7 30 52-82 24-53 (342)
169 2cqh_A IGF-II mRNA-binding pro 41.4 5.2 0.00022 18.1 0.3 51 186-245 15-65 (93)
170 1fxl_A Paraneoplastic encephal 41.3 15 0.00062 15.2 3.1 49 192-244 101-150 (167)
171 2dnl_A Cytoplasmic polyadenyla 41.1 8.2 0.00035 16.8 1.3 57 185-245 14-73 (114)
172 2qfj_A FBP-interacting repress 40.1 15 0.00065 15.1 3.1 56 185-244 34-90 (216)
173 3ns6_A Eukaryotic translation 39.9 11 0.00045 16.1 1.7 48 194-245 27-75 (100)
174 3n9u_C Cleavage and polyadenyl 39.8 13 0.00053 15.6 2.1 56 186-245 62-120 (156)
175 2pbq_A Molybdenum cofactor bio 39.6 16 0.00066 15.0 5.2 36 44-79 45-81 (178)
176 2cq2_A Hypothetical protein LO 39.4 8.7 0.00037 16.6 1.2 50 187-245 35-84 (114)
177 1b7f_A Protein (SXL-lethal pro 39.2 16 0.00067 15.0 3.1 51 190-244 100-151 (168)
178 2o3g_A Putative protein; APC85 39.1 12 0.00049 15.8 1.8 41 107-152 15-55 (92)
179 3llb_A Uncharacterized protein 39.0 13 0.00055 15.5 2.0 40 107-153 7-46 (83)
180 1vhc_A Putative KHG/KDPG aldol 38.9 16 0.00067 15.0 2.5 28 44-71 20-47 (224)
181 3beg_B Splicing factor, argini 36.9 17 0.00072 14.8 3.1 51 185-245 22-72 (115)
182 1qm9_A Polypyrimidine tract-bi 36.7 14 0.00058 15.4 1.9 49 188-244 13-61 (198)
183 1ik6_A Pyruvate dehydrogenase; 36.6 17 0.00073 14.8 3.6 29 46-74 48-76 (369)
184 1jlj_A Gephyrin; globular alph 36.5 17 0.00073 14.7 5.4 35 44-78 55-90 (189)
185 1sjq_A Polypyrimidine tract-bi 36.5 14 0.00057 15.4 1.8 51 186-245 23-73 (105)
186 2z67_A O-phosphoseryl-tRNA(SEC 36.3 18 0.00074 14.7 3.2 14 51-64 64-77 (456)
187 1fj7_A Nucleolin RBD1, protein 36.0 3 0.00012 19.6 -1.6 54 185-242 23-76 (101)
188 2hnh_A DNA polymerase III alph 35.6 9.3 0.00039 16.5 0.9 20 55-74 344-364 (910)
189 1wbh_A KHG/KDPG aldolase; lyas 35.6 18 0.00076 14.6 4.4 75 44-138 19-96 (214)
190 2krb_A Eukaryotic translation 35.5 13 0.00056 15.5 1.7 46 195-245 23-68 (81)
191 2yw3_A 4-hydroxy-2-oxoglutarat 35.0 18 0.00078 14.6 3.1 74 43-138 15-91 (207)
192 2cpe_A RNA-binding protein EWS 34.9 9.9 0.00042 16.3 0.9 57 185-245 21-86 (113)
193 2p3h_A Uncharacterized CBS dom 34.5 18 0.00075 14.7 2.2 39 107-152 10-48 (101)
194 3h2u_B Raver-1; focal adhesion 34.1 19 0.0008 14.5 2.9 55 186-244 100-155 (283)
195 1fjc_A Nucleolin RBD2, protein 34.1 17 0.00071 14.8 2.0 53 185-245 22-74 (96)
196 2cpd_A Apobec-1 stimulating pr 33.6 18 0.00077 14.6 2.1 52 185-245 21-72 (99)
197 2cpx_A Hypothetical protein FL 33.2 5.8 0.00025 17.7 -0.5 57 185-245 31-88 (115)
198 1wf0_A TDP-43, TAR DNA-binding 32.5 11 0.00046 16.0 0.8 50 185-242 11-60 (88)
199 2mss_A Protein (musashi1); RNA 31.3 15 0.00062 15.2 1.3 53 186-242 6-59 (75)
200 2rq6_A ATP synthase epsilon ch 31.2 18 0.00074 14.7 1.7 35 167-211 1-35 (138)
201 1mxs_A KDPG aldolase; 2-keto-3 30.4 21 0.00087 14.3 1.9 25 46-70 31-55 (225)
202 1wey_A Calcipressin 1; structu 30.3 21 0.00087 14.3 1.9 42 196-246 27-68 (104)
203 1nu4_A U1A RNA binding domain; 30.0 9.8 0.00041 16.3 0.2 58 186-245 15-72 (97)
204 3m0z_A Putative aldolase; MCSG 29.8 21 0.00088 14.3 1.9 28 38-65 10-37 (249)
205 2a3j_A U1 small nuclear ribonu 29.8 16 0.00068 15.0 1.3 59 185-245 35-93 (127)
206 2cjk_A Nuclear polyadenylated 28.9 23 0.00098 14.0 2.2 54 186-243 10-64 (167)
207 2pli_A Uncharacterized protein 28.6 13 0.00053 15.6 0.6 44 100-152 11-54 (91)
208 2nlw_A Eukaryotic translation 28.1 23 0.00096 14.0 1.8 46 195-245 37-82 (105)
209 3cu0_A Galactosylgalactosylxyl 27.5 2 8.4E-05 20.7 -3.7 72 64-136 9-81 (281)
210 2j8a_A Histone-lysine N-methyl 27.4 12 0.0005 15.8 0.3 47 188-238 15-62 (136)
211 2g4b_A Splicing factor U2AF 65 27.4 25 0.001 13.8 2.8 56 186-245 101-157 (172)
212 2crl_A Copper chaperone for su 26.1 26 0.0011 13.6 1.8 29 103-131 50-78 (98)
213 2e5a_A Lipoyltransferase 1; li 25.8 26 0.0011 13.6 2.7 37 37-74 38-75 (347)
214 1wi8_A EIF-4B, eukaryotic tran 25.2 27 0.0011 13.5 2.1 54 185-242 21-75 (104)
215 1pix_A Glutaconyl-COA decarbox 24.6 28 0.0012 13.5 2.1 25 49-73 123-147 (587)
216 1ryi_A Glycine oxidase; flavop 24.1 28 0.0012 13.4 1.9 36 97-132 7-42 (382)
217 2j76_E EIF-4B, EIF4B, eukaryot 24.0 29 0.0012 13.4 2.7 52 185-241 25-78 (100)
218 2adc_A Polypyrimidine tract-bi 22.5 31 0.0013 13.2 3.0 52 186-245 41-93 (229)
219 1di6_A MOGA, molybdenum cofact 22.4 31 0.0013 13.2 4.6 35 45-79 44-79 (195)
220 1cvj_A Polyadenylate binding p 22.1 31 0.0013 13.2 2.7 54 186-243 17-71 (190)
221 2ck3_H ATP synthase delta chai 22.1 25 0.001 13.8 1.1 35 168-212 15-50 (146)
222 2vt1_B Surface presentation of 22.1 31 0.0013 13.2 3.5 26 45-70 19-44 (93)
223 2jvr_A Nucleolar protein 3; RN 21.8 27 0.0011 13.6 1.2 55 185-245 34-88 (111)
224 3n4s_A Monopolin complex subun 21.2 32 0.0014 13.1 2.1 31 341-371 85-115 (116)
225 3hdq_A UDP-galactopyranose mut 21.2 32 0.0014 13.0 2.0 51 110-163 32-84 (397)
226 3cpq_A 50S ribosomal protein L 21.0 33 0.0014 13.0 5.1 66 3-74 4-71 (110)
227 2dit_A HIV TAT specific factor 20.9 33 0.0014 13.0 2.4 38 205-245 48-85 (112)
228 2ghs_A AGR_C_1268P; regucalcin 20.9 30 0.0012 13.3 1.3 20 92-112 65-84 (326)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=0 Score=705.98 Aligned_cols=463 Identities=19% Similarity=0.287 Sum_probs=364.6
Q ss_pred CCCCHHHHHHHHHHCCCCCEECCHHHHHHHHCCCC---------CCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 67898999999973384418669899877313401---------367668758995499899999999998729829997
Q gi|254780761|r 2 NQLSLDLIQRFISIVGSEGILDDQKLISPYLTEER---------KIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 2 ~~~~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~---------~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
++++++++++|++++|+++|.+|+.+|..|++|.+ ..++..|++||+|+|+|||++||++|+++++||+||
T Consensus 88 ~~~~~~~~~~L~~~~~~~~v~~d~~~r~~~~~~~s~~d~~~~~~g~~~~~PdaVv~P~s~eeV~~iv~~A~~~~vpv~pr 167 (584)
T 2uuu_A 88 PKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPM 167 (584)
T ss_dssp CCCCHHHHHHHHTTSCGGGEECSHHHHHHTTCCSSHHHHHHHHTTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 86799999999874685627558899987508998899999756877899857996399999999999999879829998
Q ss_pred CCCCCCCCCCEECCC-CCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 588777654010488-8669997630027742112373455114420022221001232223443343211131122212
Q gi|254780761|r 73 GGNTGLVGGQIPRKN-RKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLAT 151 (473)
Q Consensus 73 Gggt~~~G~~~p~~~-~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~ 151 (473)
|||||++||++|..+ ..+|+|||++||+|++||+++++|+||||++|.+|+++|+++|++||++|+|...|||||||||
T Consensus 168 GgGTs~~G~~~p~~~~~~~v~ldl~rMn~Il~iD~~~~~a~VeaGv~~~~L~~~L~~~Gl~~~~~p~S~~~sTiGG~iat 247 (584)
T 2uuu_A 168 GGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLAT 247 (584)
T ss_dssp SSCCCSSCTTSCCCCSSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHH
T ss_pred CCCCCCCCCCEECCCCCEEEEEEHHHCCCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCEECCCCCCCCCCEEEEECCC
T ss_conf 89938567813258995489998332798478848899899907844999999999809950689843455778874025
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 35640001125733344433234666530211220133223222333223465454310127994046754432100001
Q gi|254780761|r 152 NAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAV 231 (473)
Q Consensus 152 ~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f 231 (473)
|++|++|.+||.++|+|+++|||||+|++.++ ..+++++||||.++|+||||||||||++||||+|+|+.+.+.++.|
T Consensus 248 ~a~G~~s~~YG~~~d~V~~l~vVl~~G~i~~~--~~~~~~~G~DL~~l~~GSeGtLGIITe~tlrl~p~P~~~~~~~~~f 325 (584)
T 2uuu_A 248 CSSGHQSDKYGDIEDMAVSFRTVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLF 325 (584)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEECCC---------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCEEEEEEECCCCCEEEC--CCCCCCCCCCHHHHHCCCCCCEEEEEEEEEEECCCCCCCEEEEECC
T ss_conf 88887414556745511026899368876631--4655688989799865776535999988887236886441345314
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-----------------CCCCCCCCCEECCCCCCCCH
Q ss_conf 3526899999751023322222222451799999986144434-----------------11575321100111354306
Q gi|254780761|r 232 NSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTF-----------------SPLSDTSPWYILLEISSTET 294 (473)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~lli~~~g~~~ 294 (473)
++++++.++++.+.+ .+..|+++|++|...........+... ........+.+++++.+...
T Consensus 326 ~~~~~a~~a~~~i~~-~~~~p~~~el~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 404 (584)
T 2uuu_A 326 PTFAHAVSALQQIRS-SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 404 (584)
T ss_dssp SSHHHHHHHHHHHHH-HTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTTTCEEEEEEEEECHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHH
T ss_conf 318888888889986-4882567755177877776530344221034566778987631156562123003565428488
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999988886313456531001588--8896443310012211222356644442100131289999999999886
Q gi|254780761|r 295 LERAQNIANTILATGFNKKILTEWILPSL--DEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSS 372 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lw~~R~~~~~~~~~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~ 372 (473)
..... ...................... ...+..+|..|+. ..........+|+++||+++.++++++++.+.+
T Consensus 405 ~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~~~~e~~vp~~~l~~~~~~v~~~~~~ 479 (584)
T 2uuu_A 405 VVDFH--RTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDF---LLDHNMWVDVAETTVSYANLQTLWKDAKQTFVK 479 (584)
T ss_dssp HHHHH--HHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHH---HHTTTEEEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999--9999999986034102344445677777778898764---320356664121034277899999999999999
Q ss_pred HC-----CCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCC
Q ss_conf 34-----8722899998449869999842778880689999999999999999998189189973555656888887317
Q gi|254780761|r 373 IF-----PKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILE 447 (473)
Q Consensus 373 ~~-----~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~ 447 (473)
.. +....++++|.+++++|+.+....+...++. ...+.++++.+.++++++|||||||||||+.|++|+.++++
T Consensus 480 ~~~~~g~~~~~~~h~~h~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~GGsiS~eHGvG~~k~~~l~~~~g 558 (584)
T 2uuu_A 480 HFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKD-MAQYIEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRYAT 558 (584)
T ss_dssp HHHTTTCCEEEEEEEEEEETTEEEEEEEEEEECCTTCC-THHHHHHHHHHHHHHHHTTCCCC------------------
T ss_pred HHHHCCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHH-HHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 87654985069999844377863888840788787899-99999999999999998698699826253767999998659
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999998871537778887649
Q gi|254780761|r 448 PTEIKIMKKIKEIFDPAGIMNPGKFL 473 (473)
Q Consensus 448 ~~~~~~l~~iK~~~DP~gilNPGkli 473 (473)
+..+++|++||++|||+|||||||||
T Consensus 559 ~~~~~~~r~iK~~~DP~gIlNPGKli 584 (584)
T 2uuu_A 559 RGWINVYRSLKETIDPKDICNPRKLI 584 (584)
T ss_dssp CTHHHHHHHHHHHHCTTCCBSCCCC-
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999984976378988789
No 2
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=100.00 E-value=0 Score=618.87 Aligned_cols=436 Identities=19% Similarity=0.223 Sum_probs=324.4
Q ss_pred HHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEC
Q ss_conf 89999999733844186698998773134013676687589954998999999999987298299975887776540104
Q gi|254780761|r 6 LDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPR 85 (473)
Q Consensus 6 ~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~ 85 (473)
+.++++|++|||+++|++|+..+..|++|++ .++..|.+||+|+|++||++||++|+++++||+|||||||++||++|.
T Consensus 10 ~~~~~~l~~~~g~~~v~~d~~~~~~~~~d~~-~~~~~p~~vv~P~s~~ev~~iv~~a~~~~ipv~prGggtsl~Gg~~p~ 88 (571)
T 1f0x_A 10 KAFLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPN 88 (571)
T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHHBCSS-SCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCC
T ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHCCCC-CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 9999999986395418738899988616655-678887789952999999999999998798699978997777785368
Q ss_pred CC---CCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHCCCCCCHHHHC
Q ss_conf 88---86699976300277421123734551144200222210012322234-433432111311222123564000112
Q gi|254780761|r 86 KN---RKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFP-LSLPSEKYCHIGGNLATNAGGTAVLSY 161 (473)
Q Consensus 86 ~~---~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p-~~p~s~~~aTvGG~ia~~~~G~~s~~y 161 (473)
.+ ..+|||||+|||+|+++|+ +.+|+||||+++.+|+++|+++|++|| ++|+|...|||||||||||+|++|.+|
T Consensus 89 ~~~~~~~~vvid~~rmn~i~~id~-~~~v~ve~Gv~~~~l~~~l~~~g~~~~~~~p~S~~~atiGG~ia~na~G~~s~~Y 167 (571)
T 1f0x_A 89 GNDYDRDVVIISTLRLDKLHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRG 167 (571)
T ss_dssp BSCCSSCEEEEECTTCCCEEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHHHHTTCCCSCTTSC
T ss_pred CCCCCCCEEEEECHHHCCCEEECC-CCCEEEECCEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHCCC
T ss_conf 889878889999757378677999-9998998977899999899961985655575345775024441047876201005
Q ss_pred CCCCCCCCCCCC----------------CCCCCCCEEEE------------EECCC----------------CCCCCCCC
Q ss_conf 573334443323----------------46665302112------------20133----------------22322233
Q gi|254780761|r 162 GNIRHLCLGIEA----------------VLPTGDIWNGM------------HKLIK----------------DNSRYDIR 197 (473)
Q Consensus 162 G~~~d~v~~~~v----------------v~~~G~i~~~~------------~~~~~----------------~~~G~dl~ 197 (473)
|.++|+|++++| ++++|+++... ....+ .+.+.++.
T Consensus 168 G~~~d~V~~~~v~~~~~~~~v~~~g~~~~~~~g~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 247 (571)
T 1f0x_A 168 PAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADP 247 (571)
T ss_dssp SSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTHHHHHHCTTCSSCSCCTTCG
T ss_pred CCHHHHHHHHEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCCCCCCCCCH
T ss_conf 77877434212105886478636664226782888875650132100014650342055412343026788876667637
Q ss_pred CCCCCCCCCCCCEEEEEEEE--CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 32234654543101279940--4675443210000135268999997510233222222224517999999861444341
Q gi|254780761|r 198 DLLIGSEGTLGIITGAVLRL--LPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFS 275 (473)
Q Consensus 198 ~l~~GseGtlGiITevtlrl--~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~ 275 (473)
++|+||||||||||++|+|| +|+|+.+.+.++.|++++++.++++.+.......|.++|++|+..++...++.++...
T Consensus 248 ~lliGSEGtLGiIT~at~~L~~~P~p~~~~~~~~~f~~~~~a~~av~~i~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~ 327 (571)
T 1f0x_A 248 DRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFL 327 (571)
T ss_dssp GGCCSSTTCTTSSEEEEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEEEEEEHHHHHHHC--------
T ss_pred HHHHCCCCCCEEEEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEHHHHCHHHHHHHHHHCCCCCC
T ss_conf 88730368760469999996414788526999995299999999999999717898341253058899999874532110
Q ss_pred CCCC--CCCCE-----------------------------------------------------ECCCCCCCCHHHHHHH
Q ss_conf 1575--32110-----------------------------------------------------0111354306899999
Q gi|254780761|r 276 PLSD--TSPWY-----------------------------------------------------ILLEISSTETLERAQN 300 (473)
Q Consensus 276 ~~~~--~~~~~-----------------------------------------------------lli~~~g~~~~~~~~~ 300 (473)
.... ..... +..+..+. ..+....
T Consensus 328 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 406 (571)
T 1f0x_A 328 MIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGD-GVGEAKS 406 (571)
T ss_dssp -------------------------------------------------CCHHHHHHHHHCSEEEEEEECTT-HHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_conf 012247203556664212055422222455167789999999876230240355555556789999985377-4799999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998888631345653100158888964433100122112--------22356644442100131289999999999886
Q gi|254780761|r 301 IANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLA--------QKREGRSIKHDISVPIGQIPSFLQEVKKSVSS 372 (473)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~--------~~~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~ 372 (473)
+.+...... ... .+..........|..|+..... ....+..+.+|+++|++++..+ ..+.+.+.+
T Consensus 407 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~r~~~~~~~~r~~~~~~~~~~~~~~~D~avP~~~~~~~-~~~~~~~~~ 479 (571)
T 1f0x_A 407 WLVDYFKQA-----EGD-FFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWY-EHLPPEIDS 479 (571)
T ss_dssp HHHHHHHHS-----SCE-EEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEEEEEEEEEECCTTCSCCS-CCCCHHHHT
T ss_pred HHHHHHHHC-----CCC-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHH-HHHHHHHHH
T ss_conf 999998635-----554-4862689999999988888778887666522567985687589654889999-999999997
Q ss_pred HCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHH
Q ss_conf 34872289999844986999984277888068999999999999999999818918997355565688888731789999
Q gi|254780761|r 373 IFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIK 452 (473)
Q Consensus 373 ~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~~~~ 452 (473)
. ......|||+||||+|++++.+...+ ++++++.+.+++.++||+||||||||+.+.. .+
T Consensus 480 ~--~~~~~~~GH~gdGnlH~~~~~~~~~d--------~~~ik~~i~~~v~~~gGsiS~EHGiG~~~~a----------~~ 539 (571)
T 1f0x_A 480 Q--LVHKLYYGHFMCYVFHQDYIVKKGVD--------VHALKEQMLELLQQRGAQYPAEHNVGHLYKA----------PE 539 (571)
T ss_dssp T--EEEEEEEEETTTTEEEEEEEEETTCC--------HHHHHHHHHHHHHHTTCBSCSSSCCTTTSCC----------CH
T ss_pred H--CCCCEEEEEECCCCCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----------HH
T ss_conf 1--89656985727887761774899977--------9999999999999879879884558855003----------99
Q ss_pred HHHHHHHHHCCCCCCCCCC
Q ss_conf 9999988715377788876
Q gi|254780761|r 453 IMKKIKEIFDPAGIMNPGK 471 (473)
Q Consensus 453 ~l~~iK~~~DP~gilNPGk 471 (473)
.|++||+.|||+||||||.
T Consensus 540 ~l~~iK~~lDP~~ilNPGv 558 (571)
T 1f0x_A 540 TLQKFYRENDPTNSMNPGI 558 (571)
T ss_dssp HHHHHHHHHCTTCCBSTTT
T ss_pred HHHHHHHHHCCCCCCCCCC
T ss_conf 9999999829398989998
No 3
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=100.00 E-value=0 Score=553.37 Aligned_cols=453 Identities=15% Similarity=0.203 Sum_probs=330.1
Q ss_pred HHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCC--CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCC
Q ss_conf 899999997338441866989987731340136--76687589954998999999999987298299975887776-540
Q gi|254780761|r 6 LDLIQRFISIVGSEGILDDQKLISPYLTEERKI--YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLV-GGQ 82 (473)
Q Consensus 6 ~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~--~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~-G~~ 82 (473)
..++++|++|||+++|++|+..+..|++|+... +...|.+||+|+|++||+++|++|+++++||+|||||||.. |++
T Consensus 18 ~~~~~~l~~i~g~~~v~~~~~~~~~y~~~~~~~~~~~~~P~~Vv~P~s~~eV~~~v~~a~~~~i~v~~rggG~s~~~g~~ 97 (520)
T 1wvf_A 18 NKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSA 97 (520)
T ss_dssp HHHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTT
T ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 99999999862975388789999876455421246788887899569999999999999987980999899988778886
Q ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-CCCCCCHHHHC
Q ss_conf 10488866999763002774211237345511442002222100123222344334321113112221-23564000112
Q gi|254780761|r 83 IPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLA-TNAGGTAVLSY 161 (473)
Q Consensus 83 ~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia-~~~~G~~s~~y 161 (473)
.|.. .++|+|||++||+|++||+++++||||||++|.+|+++|+++|+.+|++|+ ..||+||+|+ |+++|+++++|
T Consensus 98 ~~~~-~~gvvidl~~m~~I~~vd~~~~~v~V~aG~~~~~l~~~l~~~Gl~~~~~~~--~~~~~gG~i~~t~~~G~~~~~y 174 (520)
T 1wvf_A 98 APVQ-RGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFS--APSAIAGPVGNTMDRGVGYTPY 174 (520)
T ss_dssp SCSS-TTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCC--SSCTTCCHHHHHHTTCBCSSTT
T ss_pred CCCC-CCEEEEECCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5777-997999850379826985888848988993789989999855997557889--9887567534345787531477
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC-------CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 57333444332346665302112201332232223332-------23465454310127994046754432100001352
Q gi|254780761|r 162 GNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDL-------LIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSL 234 (473)
Q Consensus 162 G~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l-------~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~ 234 (473)
|.++|||+++|||||||+|++++.+..+++.++|+.+. ++||||||||||++||||+|+|+.....++.|+|+
T Consensus 175 G~~~d~v~~~evV~~~G~iv~~~~~~~~~~~~~~l~~~~~g~~~~~lGSeGtlGIIT~~tlrl~p~P~~~~~~~~~f~~~ 254 (520)
T 1wvf_A 175 GEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDE 254 (520)
T ss_dssp CBGGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCG
T ss_pred CCEEEEEEEEEEECCCCCEEECCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCH
T ss_conf 75577677888985888655317753445402233314678203204356621110035533668987269999996854
Q ss_pred HHHHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC---------------CCCCCCEECCCCCCCCHH-H
Q ss_conf 68999997510--23322222222451799999986144434115---------------753211001113543068-9
Q gi|254780761|r 235 EQALQLLQLSQ--KTAGSMLTAFELISNFILKLVVKHIPNTFSPL---------------SDTSPWYILLEISSTETL-E 296 (473)
Q Consensus 235 ~~a~~~~~~~~--~~~~~~~~aiel~d~~~~~~~~~~~~~~~~~~---------------~~~~~~~lli~~~g~~~~-~ 296 (473)
+++.+++..+. ......+.++++++.................. .....+.+++++.+.... +
T Consensus 255 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~v~ 334 (520)
T 1wvf_A 255 ADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVD 334 (520)
T ss_dssp GGHHHHHHHHHHHHHTTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHHHHHHHCCCSEEEEEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCHHHHH
T ss_conf 45999999999875414771799998778999887654203665556555899998640146663057867608899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-----------CCCCCCC--CCCCCHHHHHHHHHH
Q ss_conf 999999988886313456531001588889644331001221122-----------2356644--442100131289999
Q gi|254780761|r 297 RAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQ-----------KREGRSI--KHDISVPIGQIPSFL 363 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~-----------~~~g~~~--~~Dvavp~~~l~~~~ 363 (473)
........+... ...... ...........|..|+...... ...+... ......+...+..++
T Consensus 335 ~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 409 (520)
T 1wvf_A 335 VNWKIVTDVFKK-LGKGRI----VTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQA 409 (520)
T ss_dssp HHHHHHHHHHHH-HTCCEE----EEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCEE----ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 999999999997-499745----315526676899999887654344102233320268875056411247515559999
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
Q ss_conf 99999988634872289999844986999984277888068999999999999999999818918997355565688888
Q gi|254780761|r 364 QEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLE 443 (473)
Q Consensus 364 ~~v~~~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~ 443 (473)
..+++...++ ......++|+++||+|+.+....+...++... +++++.+.+.+.+.+.|| ++||+|+.+.+|+.
T Consensus 410 ~~~~~~~~~~--~~~~~~~~~~g~g~~h~~~~~~~d~~~~~~~~-~a~~~~~~l~~~~~~~G~---~~hg~g~~~~~~~~ 483 (520)
T 1wvf_A 410 AMAKRVLHKY--GLDYVAEFIVAPRDMHHVIDVLYDRTNPEETK-RADACFNELLDEFEKEGY---AVYRVNTRFQDRVA 483 (520)
T ss_dssp HHHHHHHHHT--TCCCCEEEEECSSEEEEEEEEEEETTCHHHHH-HHHHHHHHHHHHHHHTTC---CBSCCCGGGHHHHH
T ss_pred HHHHHHHHHH--CCCEEEEEEECCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHH
T ss_conf 9999999970--99579999975672244455325899989999-999999999999875084---56777266699999
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 73178999999999887153777888764
Q gi|254780761|r 444 GILEPTEIKIMKKIKEIFDPAGIMNPGKF 472 (473)
Q Consensus 444 ~~~~~~~~~~l~~iK~~~DP~gilNPGkl 472 (473)
+.++++.+++|++||+.|||+|||||||+
T Consensus 484 ~~~g~~~~~~l~~iK~~~DP~gilNPGK~ 512 (520)
T 1wvf_A 484 QSYGPVKRKLEHAIKRAVDPNNILAPGRS 512 (520)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCCBCTTGG
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86099999999999998498757788878
No 4
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=100.00 E-value=0 Score=548.72 Aligned_cols=453 Identities=18% Similarity=0.190 Sum_probs=319.5
Q ss_pred HHHHHHHHHHCCCCCEECCHHHHHHHHCCCC---------CCC---CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 8999999973384418669899877313401---------367---6687589954998999999999987298299975
Q gi|254780761|r 6 LDLIQRFISIVGSEGILDDQKLISPYLTEER---------KIY---HGTSPLVLLPSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 6 ~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~---------~~~---~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
++++++|+++||+++|.+|+..+..|..++. ..+ ...|++||+|+|+|||++||++|+++++||+|||
T Consensus 22 ~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~aVv~P~s~eeV~~iv~~a~~~~vpv~p~g 101 (560)
T 1e8g_A 22 NEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPIS 101 (560)
T ss_dssp HHHHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCSCTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999975955564064665441244345322356311246656488889964999999999999998798089966
Q ss_pred CCCC--CCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCC--CCCCCCCCHHH
Q ss_conf 8877--76540104888669997630-0277421123734551144200222210012322234433--43211131122
Q gi|254780761|r 74 GNTG--LVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSL--PSEKYCHIGGN 148 (473)
Q Consensus 74 ggt~--~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p--~s~~~aTvGG~ 148 (473)
+|+| +.|++.|.. ++|||||+| ||+|++||+++++|+||||++|.+|+++|+++|+.+|+.| ++...+|+||+
T Consensus 102 ~G~~~~~~g~~~~~~--ggvvldlsr~mn~Il~id~~~~~~~Ve~Gv~~~~l~~~l~~~Gl~~p~~~~~~~~~~~~i~G~ 179 (560)
T 1e8g_A 102 IGRNSGYGGAAPRVS--GSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGN 179 (560)
T ss_dssp SCCCTTTTTTCCSST--TCEEEECTTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHH
T ss_pred CCCCCCCCCCCCCCC--CEEEEECCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC
T ss_conf 799876778742689--819998822458548985899989998980599999999874310146678985012503113
Q ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE-------------CCCCCCCCCCCCCC----------CCCCC
Q ss_conf 21235640001125733344433234666530211220-------------13322322233322----------34654
Q gi|254780761|r 149 LATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHK-------------LIKDNSRYDIRDLL----------IGSEG 205 (473)
Q Consensus 149 ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~-------------~~~~~~G~dl~~l~----------~GseG 205 (473)
++++ |.++.+||.++|+|+++|||||||+|++++.. ..|+++||||.+|| +||||
T Consensus 180 ~~~~--G~~~~~yG~~~d~v~~levVl~dG~ii~tg~~~~~~~~~~~~~~~~~k~~~g~dl~~l~~~~~g~~~~~iGSEG 257 (560)
T 1e8g_A 180 AVER--GVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQS 257 (560)
T ss_dssp HHTT--CBCSSTTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSSCCCGGGGSSS
T ss_pred CCCC--CCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHCCCCCCC
T ss_conf 0257--75322457600025369999379729982674443301222035433344552256652256673011456763
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCCC----CCCC
Q ss_conf 54310127994046754432100001352689999975102-332222222245179999998614443411----5753
Q gi|254780761|r 206 TLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQK-TAGSMLTAFELISNFILKLVVKHIPNTFSP----LSDT 280 (473)
Q Consensus 206 tlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~-~~~~~~~aiel~d~~~~~~~~~~~~~~~~~----~~~~ 280 (473)
||||||++||||+|+|+.....++.|++++++.+++..+.. ..+..+..++++++..++.........+.. ++..
T Consensus 258 tlGIIT~~tlrL~p~P~~~~~~~~~f~~~~~~~~av~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (560)
T 1e8g_A 258 NMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDE 337 (560)
T ss_dssp SSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHHHHHHHCCGGGTCCCSSCCCHH
T ss_pred EEEEEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 32443577872147886369999993876559999999998621566333167889999999875432268765555799
Q ss_pred -----------CCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC----CC----
Q ss_conf -----------21100111354306899999999888863134565310015888896443310012211----22----
Q gi|254780761|r 281 -----------SPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPL----AQ---- 341 (473)
Q Consensus 281 -----------~~~~lli~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~----~~---- 341 (473)
..+.+.....+.+.. .....+.+.. .+.......+..... .....+|..|+.... ..
T Consensus 338 ~~~~l~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (560)
T 1e8g_A 338 ELDKIAKQLNLGRWNFYGALYGPEPI--RRVLWETIKD-AFSAIPGVKFYFPED-TPENSVLRVRDKTMQGIPTYDELKW 413 (560)
T ss_dssp HHHHHHHHHTCCSEEEEEEEESCHHH--HHHHHHHHHH-HHTTSTTCEEECGGG-SCTTCHHHHHHHHTTTCCCCGGGGG
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHH--HHHHHHHHHH-HHHHCCCCEEEECCC-HHHHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 99987654054200466300489999--9999998899-998579715772578-8888999998866430401222033
Q ss_pred ---CCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf ---2356644442100--13128999999999988634872289999844986999984277888068999999999999
Q gi|254780761|r 342 ---KREGRSIKHDISV--PIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNI 416 (473)
Q Consensus 342 ---~~~g~~~~~Dvav--p~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~ 416 (473)
...+...+++..+ +...+..++..+++.+.+.. .....++|+++||+|+++....+..+++.. .++.++.+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~h~g~g~~h~~~~~~~d~~d~~~~-~~~~~~~~~ 490 (560)
T 1e8g_A 414 IDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAG--LDFIGTFTVGMREMHHIVCIVFNKKDLIQK-RKVQWLMRT 490 (560)
T ss_dssp GGGSTTEEEEEECBEECSSHHHHHHHHHHHHHHHHHHT--CCCCEEEEECSSCEEEEEEEEEETTCHHHH-HHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEEECCCCCEEEEECCCCCCCHHHH-HHHHHHHHH
T ss_conf 12367886025734157782779999999999999719--808999996577405765004799999999-999999999
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHH---HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999999818918997355565688888731789---99999999887153777888764
Q gi|254780761|r 417 VYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPT---EIKIMKKIKEIFDPAGIMNPGKF 472 (473)
Q Consensus 417 ~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~---~~~~l~~iK~~~DP~gilNPGkl 472 (473)
+.+.+.+.|| +|||+|..+.+|+.+++++. .+++|++||++|||+|||||||+
T Consensus 491 l~~~~~~~g~---~~hg~g~~~~~~~~~~~~~~~~~~~~~~~~iK~~~DP~gIlNPGK~ 546 (560)
T 1e8g_A 491 LIDDCAANGW---GEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKS 546 (560)
T ss_dssp HHHHHHHTTC---CBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHHHHCTTCCBCTTGG
T ss_pred HHHHHHHHCC---CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999876172---3265760018899986287789999999999998397647797989
No 5
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=100.00 E-value=0 Score=459.02 Aligned_cols=448 Identities=12% Similarity=0.087 Sum_probs=309.0
Q ss_pred HHHHHHCC-CCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCEECCC
Q ss_conf 99997338-4418669899877313401367668758995499899999999998-729829997588777654010488
Q gi|254780761|r 10 QRFISIVG-SEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLAT-ETNTSITPQGGNTGLVGGQIPRKN 87 (473)
Q Consensus 10 ~~l~~i~g-~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~-~~~i~v~prGggt~~~G~~~p~~~ 87 (473)
..+.+-++ ...|++|+..+..|++||.+.|+..|.+||+|+|++||+++|++|. ++++||+|||||||++|++++
T Consensus 28 ~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~P~~Vv~P~s~~dV~~~v~~a~~~~~~~v~~rggGhs~~g~s~~--- 104 (524)
T 2exr_A 28 DGVSESLNIQGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMA--- 104 (524)
T ss_dssp ------CCCSSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSSTTCC---
T ss_pred HHHHHHCCCCCEEECCHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---
T ss_conf 23565427786151287778875038688641277789967999999999999997389159998899389887628---
Q ss_pred CCEEEEECCCCCCC------CCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHC
Q ss_conf 86699976300277------421123734551144200222210012322234433432111311222123564000112
Q gi|254780761|r 88 RKDIILSIKRMNRI------RDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSY 161 (473)
Q Consensus 88 ~~~vvld~~~mn~i------l~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~y 161 (473)
.++|+|||++||+| +++|+++++|+||||++|.+|+++|.++|+++|+++++...+|+||++++++.|..+.+|
T Consensus 105 ~~gvvIdl~~m~~i~~~~~~i~id~~~~~v~V~aGv~~~~l~~~l~~~g~~~~~~~~~~~~~~igg~~~g~g~g~~~~~~ 184 (524)
T 2exr_A 105 EGGLVVDMSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRY 184 (524)
T ss_dssp TTSEEEEGGGGTTSCEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEECSCCCSCCSSBHHHHHTTCCCCTTHHHH
T ss_pred CCEEEEECHHHCCCCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf 98799987243175134561454389988999488289999999997199880689887751256303789887761364
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 57333444332346665302112201332232223332234654543101279940467544321000013526899999
Q gi|254780761|r 162 GNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLL 241 (473)
Q Consensus 162 G~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~ 241 (473)
|.+.|+|+++|||+|||+++++ +...+|||.+++.||+|+|||||++||||+|.|+......+.|++++++.+++
T Consensus 185 G~~~d~V~~l~vV~~dG~iv~~-----~~~~~~dL~~a~~Gs~G~lGIVt~~tlkl~p~p~~~~~~~~~~~~~~~~~~~~ 259 (524)
T 2exr_A 185 GPQTSNVTELDVVTGNGDVVTC-----SEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFTQDA 259 (524)
T ss_dssp CCGGGSEEEEEEEETTSCEEEE-----ESSSSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHHHHHHH
T ss_pred CCHHHEEEEEEEECCCCCEEEE-----CCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCHHHHHHHH
T ss_conf 7640104046787489758997-----68543345554216888625788887603478861799999849999999999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHH------H---CCC---CCCCCCC-CCCCE--E--CCCCCCCCHHHHHHHHHHH
Q ss_conf 751023322222222451799999986------1---444---3411575-32110--0--1113543068999999998
Q gi|254780761|r 242 QLSQKTAGSMLTAFELISNFILKLVVK------H---IPN---TFSPLSD-TSPWY--I--LLEISSTETLERAQNIANT 304 (473)
Q Consensus 242 ~~~~~~~~~~~~aiel~d~~~~~~~~~------~---~~~---~~~~~~~-~~~~~--l--li~~~g~~~~~~~~~~~~~ 304 (473)
+.+.... ...++++++...+..... . .+. ....+.. ..... + .+.................
T Consensus 260 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (524)
T 2exr_A 260 EWLVSQK--NESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVER 337 (524)
T ss_dssp HHHHTSC--TTSSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999847--55207787666530454211242110125544321111222246512566643024664318889999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88863134565310015888896443310012211222---356644442100131289999999999886348722899
Q gi|254780761|r 305 ILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQK---REGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGL 381 (473)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~~---~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~ 381 (473)
....... ........+......+|..+........ ........|+++|.+++.++++++.+.+.+......+..
T Consensus 338 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (524)
T 2exr_A 338 LIGRLRF---NEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPMLV 414 (524)
T ss_dssp HHTTCCC---CTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCCCCEEEEEEHHHHHHHHHHCCCCCTTTCCSSCEEE
T ss_pred HHHHCCC---CCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9985266---6650230426689999886441344542477555324688624588899999999998874188624998
Q ss_pred EEEECC-------------C-EEEE-EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHC
Q ss_conf 998449-------------8-6999-984277888068999999999999999999818918997355565688888731
Q gi|254780761|r 382 FGHIGD-------------G-NIHF-NVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGIL 446 (473)
Q Consensus 382 ~gH~g~-------------g-~lh~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~ 446 (473)
+.+.+. . .++. .+........++.....+....+.+.+.+...|+..++.|+.+..+. ++.+.+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~ 493 (524)
T 2exr_A 415 YPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQE-EWIRHF 493 (524)
T ss_dssp EEEEGGGSCTTSSCCCCSSCSEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEESSCCCCSHH-HHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHH-HHHHHH
T ss_conf 2023556677522246777761799999731577557899999999999999998762962552047656989-999988
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78999999999887153777888764
Q gi|254780761|r 447 EPTEIKIMKKIKEIFDPAGIMNPGKF 472 (473)
Q Consensus 447 ~~~~~~~l~~iK~~~DP~gilNPGkl 472 (473)
++ .++.|+++|+.|||+||||||+-
T Consensus 494 g~-~~~~l~~lK~~~DP~gifnPG~~ 518 (524)
T 2exr_A 494 GN-RWSRFVDRKAMFDPMAILSPGQK 518 (524)
T ss_dssp GG-GHHHHHHHHHHHCTTCCBCGGGC
T ss_pred HH-HHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89-99999999997595236898988
No 6
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=100.00 E-value=0 Score=441.58 Aligned_cols=451 Identities=12% Similarity=0.086 Sum_probs=301.5
Q ss_pred HHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCE
Q ss_conf 99999997338441866989987731340136766875899549989999999999872---982999758877765401
Q gi|254780761|r 7 DLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATET---NTSITPQGGNTGLVGGQI 83 (473)
Q Consensus 7 ~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~---~i~v~prGggt~~~G~~~ 83 (473)
....+|.++.++..|.+|+..+..|++|+.+.|+..|.+||+|+|++||+++|++|+++ ++||+|||||||+.|++.
T Consensus 33 ~~~~~l~~~~~~g~v~~d~~~~~~~~~d~~~~~~~~P~aVv~P~s~~dV~~~v~~a~~~~~~~~~v~~rggGhs~~G~s~ 112 (534)
T 1w1o_A 33 PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAF 112 (534)
T ss_dssp -------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTC
T ss_pred CCHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
T ss_conf 78489986167982765988877771054576247788799569999999999999838999956999899818888752
Q ss_pred ECCCCCEEEEECCCCCCC-----CCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHH
Q ss_conf 048886699976300277-----421123734551144200222210012322234433432111311222123564000
Q gi|254780761|r 84 PRKNRKDIILSIKRMNRI-----RDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAV 158 (473)
Q Consensus 84 p~~~~~~vvld~~~mn~i-----l~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s 158 (473)
+. ++|+|||++||+| +++|+++++|+||||++|.+|+++|.++|+++| ++++...+||||+++++++|..+
T Consensus 113 ~~---~gvvIdl~~l~~i~~~~~v~id~~~~~v~V~aGv~~~~l~~~L~~~G~~~~-~~~~~~~~~vGG~~~ggg~g~~~ 188 (534)
T 1w1o_A 113 AP---GGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPR-SWTDYLYLTVGGTLSNAGISGQA 188 (534)
T ss_dssp CT---TSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEEES-CCCSSCCSBHHHHHTTCCCSTTH
T ss_pred CC---CEEEEECCCCCCCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCC-CCCCCCCEEEEEHHHCCCCCCCC
T ss_conf 88---989998855675455773588289998999788579999999998398426-78988813880242158998865
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11257333444332346665302112201332232223332234654543101279940467544321000013526899
Q gi|254780761|r 159 LSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQAL 238 (473)
Q Consensus 159 ~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~ 238 (473)
.+||.+.|+|+++|||+|||+++++. ...+|||..++.||+|+|||||++|||++|.|+......+.|++++++.
T Consensus 189 ~~~G~~~d~v~~~~vVladG~vv~~s-----~~~~~dl~~a~~G~~G~~GVVt~~tlk~~p~p~~~~~~~~~~~~~~~~~ 263 (534)
T 1w1o_A 189 FRHGPQISNVLEMDVITGHGEMVTCS-----KQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFS 263 (534)
T ss_dssp HHHCCGGGSEEEEEEEETTSCEEEEE-----SSSSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHHH
T ss_pred CCCCCHHHEECEEEEECCCCCEEEEC-----CCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHH
T ss_conf 67674302003136871787579964-----6331010314211478776037999841589872899999749999999
Q ss_pred HHHHHHCCCCCC----CCCCCCCCC------HHHHHHHHH-HCCCC--------CCCCCCCCCCEEC---CCCCCCCHH-
Q ss_conf 999751023322----222222451------799999986-14443--------4115753211001---113543068-
Q gi|254780761|r 239 QLLQLSQKTAGS----MLTAFELIS------NFILKLVVK-HIPNT--------FSPLSDTSPWYIL---LEISSTETL- 295 (473)
Q Consensus 239 ~~~~~~~~~~~~----~~~aiel~d------~~~~~~~~~-~~~~~--------~~~~~~~~~~~ll---i~~~g~~~~- 295 (473)
+++..+...... ....+++++ ......... ..... ............+ .........
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (534)
T 1w1o_A 264 ADQERLTAPRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAA 343 (534)
T ss_dssp HHHHHHHCBC------CBCSCSEEEEEEEEGGGHHHHHHTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC-------
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH
T ss_conf 99999987253322112103777767765312222232346677641134543203444302788888776326531012
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999988886313456531001588889644331001221122----235664444210013128999999999988
Q gi|254780761|r 296 ERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQ----KREGRSIKHDISVPIGQIPSFLQEVKKSVS 371 (473)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~----~~~g~~~~~Dvavp~~~l~~~~~~v~~~l~ 371 (473)
.........+........ .. ...... ....+|..+....... ........+|+.+|++++.++++.+.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~ 419 (534)
T 1w1o_A 344 AAVDQELASVLGTLSYVE-GF-AFQRDV--AYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGIL 419 (534)
T ss_dssp CHHHHHHHHHHTTCCCCT-TC-EEEEEE--EHHHHHTHHHHHHHHHHHTTCSSSCCCCEEEEEEGGGHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHCCCCC-CE-EECCHH--HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 333699999997557765-40-102517--78999987543477776416767762367776348999999999999987
Q ss_pred HHCCCCEEEEEEEE--------------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHH
Q ss_conf 63487228999984--------------4986999984277888068999999999999999999818918997355565
Q gi|254780761|r 372 SIFPKTRIGLFGHI--------------GDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQL 437 (473)
Q Consensus 372 ~~~~~~~~~~~gH~--------------g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~ 437 (473)
..........+.+. ....+|...+. .....+ .....+.++.+.+.+.+.+.||... +|+.+..
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 496 (534)
T 1w1o_A 420 QGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLL-FSSVAP-NDLARLQEQNRRILRFCDLAGIQYK-TYLARHT 496 (534)
T ss_dssp TTSCCCSCEEEEEEEGGGSCTTSSCCCCSSSEEEEEEEC-CCC----CHHHHHHHHHHHHHHHHHHTTCCCE-ESSCCCS
T ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEE-CCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCC
T ss_conf 416775338996313665677544567887716999972-478985-7999999999999999997497877-5477646
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 688888731789999999998871537778887649
Q gi|254780761|r 438 HKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473 (473)
Q Consensus 438 k~~~~~~~~~~~~~~~l~~iK~~~DP~gilNPGkli 473 (473)
+.+.+.+.|++..++.|++||+.|||+||||||+-|
T Consensus 497 ~~~~~~~~yg~~~~~~l~~iK~~~DP~gifnPG~~I 532 (534)
T 1w1o_A 497 DRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDI 532 (534)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHHHHCTTCCBCGGGCS
T ss_pred CHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 889999986999999999999986941127999987
No 7
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=100.00 E-value=0 Score=364.65 Aligned_cols=199 Identities=13% Similarity=0.094 Sum_probs=169.7
Q ss_pred HCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 13401367668758995499899999999998729829997588777654010488866999763002774211237345
Q gi|254780761|r 32 LTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTI 111 (473)
Q Consensus 32 ~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v 111 (473)
...|+..|+..|.+||+|+|++||+++|++|+++++||+|||||||++|++.+.. ++|+|||++||+| +||+++++|
T Consensus 45 ~~~~n~~~~~~P~~Vv~P~s~~eV~~~v~~A~~~g~~v~~rggGhs~~g~~~~~~--~gvvIDls~mn~I-~vD~~~~tv 121 (521)
T 2ipi_A 45 TRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPA--VRAVIDMSQMRQV-FYDSGKRAF 121 (521)
T ss_dssp TCCSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTT--CCEEEECTTCCCE-EEETTTTEE
T ss_pred HCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC--CEEEEECCCCCCE-EEECCCCEE
T ss_conf 2201357668898899559999999999999987981999899847563836789--7399988889987-983899989
Q ss_pred EECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 51144200222210012322234433432111311222123564000112573334443323466653021122013322
Q gi|254780761|r 112 AVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDN 191 (473)
Q Consensus 112 ~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~ 191 (473)
+||||++|.+|+++|.++|+.+++.++ ...+||||+++++++|..|.+||.+.|+|+++|||||||+++.......+..
T Consensus 122 ~V~aGv~~~dl~~~l~~~g~~~~~~g~-~~~v~iGG~i~~gg~G~~s~~yG~~~d~v~~levVladG~~~~~~~~~~~~~ 200 (521)
T 2ipi_A 122 AVEPGATLGETYRALYLDWGVTIPAGV-CPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVVVDASGRARKVVATSAA 200 (521)
T ss_dssp EECTTSBHHHHHHHHHHHHSBCCCCCS-CTTCBHHHHTTTTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEEEEEEECCT
T ss_pred EECCCCCHHHHHHHHHHHCCEEECCCC-CCCEEECCEECCCCCCCCCCCCCCHHHEEEEEEEEEECCCEEEEEEEEECCC
T ss_conf 990896999999999860896857887-5650461420799877777788636463888899986681899753210010
Q ss_pred --CCCC-CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf --3222-333223465454310127994046754432100001352
Q gi|254780761|r 192 --SRYD-IRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSL 234 (473)
Q Consensus 192 --~G~d-l~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~ 234 (473)
.++| |..++.|++|+|||||++|||++|.|+......+.+++.
T Consensus 201 ~~~~~~l~~al~~g~~g~~GVVT~~~l~l~p~~~~~~~~~~~~~~~ 246 (521)
T 2ipi_A 201 DDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAPT 246 (521)
T ss_dssp TCTTHHHHHHTTTSCSSSSCEEEEEEECCSSCCSSCGGGSSCBCCS
T ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEEECCCH
T ss_conf 1235067877875100113248999999615886268899714877
No 8
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=100.00 E-value=0 Score=361.35 Aligned_cols=222 Identities=17% Similarity=0.187 Sum_probs=184.3
Q ss_pred HHCCCCCEECCH---HHHHHHH-CC---CCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECC
Q ss_conf 733844186698---9987731-34---0136766875899549989999999999872982999758877765401048
Q gi|254780761|r 14 SIVGSEGILDDQ---KLISPYL-TE---ERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRK 86 (473)
Q Consensus 14 ~i~g~~~v~~d~---~~~~~~~-~d---~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~ 86 (473)
++.+-..+..|+ ..+..|+ ++ |...+...|.+||+|+|+|||+++|++|+++++||++||||+|..|++.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~aVv~P~s~edV~~iv~~a~~~~~~v~~rggGhs~~g~s~~~~ 89 (495)
T 3fw9_A 10 GVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSD 89 (495)
T ss_dssp TCCCEEECCCCTTCHHHHHHHHTCCCGGGCSTTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCS
T ss_pred CCCCCCEECCCCCCCHHHHHHHHCCCCHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 89988543089873267898874127000478899986899719999999999999987975999859978787726689
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCC
Q ss_conf 88669997630027742112373455114420022221001232223443343211131122212356400011257333
Q gi|254780761|r 87 NRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRH 166 (473)
Q Consensus 87 ~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d 166 (473)
.++|+|||++||+| ++|+++++|+||||++|.+|+++|+++|+.+|++|++...+||||++++++.|..|.+||.+.|
T Consensus 90 -~~~i~Idl~~mn~i-~~d~~~~tv~V~aGv~~~~l~~~L~~~G~~l~~~~g~~~~~tvGG~i~~g~~G~~s~~~G~~~d 167 (495)
T 3fw9_A 90 -TPFILIDLMNLNRV-SIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAAD 167 (495)
T ss_dssp -SCEEEEECTTCCCE-EEETTTTEEEEETTCBHHHHHHHHHHHCSSEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGG
T ss_pred -CCEEEEECCCCCCE-EEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
T ss_conf -99899999789987-9847999899955979999999999862357768878997635223356024767467752654
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC-CCHHHHHHHHH
Q ss_conf 44433234666530211220133223222333223465454310127994046754432100001-35268999997
Q gi|254780761|r 167 LCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAV-NSLEQALQLLQ 242 (473)
Q Consensus 167 ~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f-~~~~~a~~~~~ 242 (473)
+|+++|||+|+|++++.. ....+||.+++.||+|+|||||++|+|++|.|+......+.+ .+.+++.+++.
T Consensus 168 ~V~~l~vV~~~G~iv~~~-----~~~~~~l~~~~~g~~G~lGIvt~~tlr~~p~~~~~~~~~~~~~~~~~~~~~~~~ 239 (495)
T 3fw9_A 168 NVVDAILIDANGAILDRQ-----AMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLH 239 (495)
T ss_dssp GEEEEEEECTTCCEECHH-----HHCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHH
T ss_pred CCCCEEEEECCCEEEEEC-----CCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 135215761584089916-----997057999986421114413899999733787379999954898799999999
No 9
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=100.00 E-value=0 Score=347.82 Aligned_cols=404 Identities=14% Similarity=0.108 Sum_probs=247.7
Q ss_pred HHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 77313401367668758995499899999999998729829997588777654010488866999763002774211237
Q gi|254780761|r 29 SPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRS 108 (473)
Q Consensus 29 ~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~ 108 (473)
....+.|+..++..|.+||+|+|++||+++|++|+++++||++||||+|.+|++.. .++|+|||++||+| +||+++
T Consensus 25 ~~~~~~~~~~~~~~P~~vv~P~s~~~V~~~v~~A~~~~~~v~~rggGhs~~g~s~~---~~gi~Id~~~~~~i-~id~~~ 100 (459)
T 2bvf_A 25 DAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN---DGGIVLDLRLMNSI-HIDTAG 100 (459)
T ss_dssp HHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTCC---SSSEEEECTTCCCE-EEETTT
T ss_pred HHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC---CCEEEEECCCCCCE-EEECCC
T ss_conf 99998885462578768996599999999999999879829998899688887578---89899998678987-982799
Q ss_pred CEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 34551144200222210012322234433432111311222123564000112573334443323466653021122013
Q gi|254780761|r 109 NTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLI 188 (473)
Q Consensus 109 ~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~ 188 (473)
++|+||||++|.+|+++|.++|+.+|..+. ...++||++++++.|..|.+||.+.|+|+++|||+|||+++++.
T Consensus 101 ~tv~V~aG~~~~~l~~~l~~~G~~~~~~~~--~~vgvgG~~~~gG~G~~s~~~G~~~d~V~~~~vV~~dG~vv~~s---- 174 (459)
T 2bvf_A 101 SRARIGGGVISGDLVKEAAKFGLAAVTGMH--PKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCS---- 174 (459)
T ss_dssp TEEEEETTCBHHHHHHHHHTTTEEECCCSC--TTSBHHHHHTTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEE----
T ss_pred CEEEEECCEEHHHHHHHHHHCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCEEEEC----
T ss_conf 989995774999999999868936735865--57652564258998875366486503343678980688689969----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 32232223332234654543101279940467544321000013-52689999975102332222222245179999998
Q gi|254780761|r 189 KDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVN-SLEQALQLLQLSQKTAGSMLTAFELISNFILKLVV 267 (473)
Q Consensus 189 ~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~-~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~~~~~ 267 (473)
...++||..++.||+|+|||||++|+|++|.|+......+.|. +.+++.+++......... +.|
T Consensus 175 -~~~~~DLf~a~~Gg~G~~GiVt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------- 239 (459)
T 2bvf_A 175 -DDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNE------MAD-------- 239 (459)
T ss_dssp -SSSSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH------TTT--------
T ss_pred -CCCCHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHH------HHH--------
T ss_conf -99982799874077767658899999975488718999998078899999999999999875------055--------
Q ss_pred HHCCCCCCCC-C-CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 6144434115-7-5321100111354306899999999888863134565310015888896443310012211222356
Q gi|254780761|r 268 KHIPNTFSPL-S-DTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREG 345 (473)
Q Consensus 268 ~~~~~~~~~~-~-~~~~~~lli~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~~~~g 345 (473)
.......... . ......+.....+.. +..+.....+.+ ... ...+........+.. +..............
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~l~~--l~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 312 (459)
T 2bvf_A 240 HIYPSVFVGVDENRAPSVTVCVGHLGGL--DIAERDIARLRG--LGR-TVSDSIAVRSYDEVV--ALNAEVGSFEDGMSN 312 (459)
T ss_dssp TCCCEEEEEECTTCCEEEEEEEECCSCH--HHHHHHHHHHHT--TSC-CSEECCEEECHHHHH--HHHHHHSCCCCSCEE
T ss_pred HHCCEEEECCCCCCCCEEEEEEEECCCH--HHHHHHHHHHHH--HCC-CHHCCCCEEEHHHHH--HHHCCCCCCCCCCCC
T ss_conf 4061046511678983699999725998--899999999876--155-110113141199987--543334566655543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE----E----------CCCEEEEEE-ECCCCCCCHHHHHHHH
Q ss_conf 644442100131289999999999886348722899998----4----------498699998-4277888068999999
Q gi|254780761|r 346 RSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGH----I----------GDGNIHFNV-FPPTDENQDEFLSLHW 410 (473)
Q Consensus 346 ~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH----~----------g~g~lh~~~-~~~~~~~~~~~~~~~~ 410 (473)
..+..++.+|.....+.+......+...........+.. . .++..++.+ .+..+...++. .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~~~~~~~~~~~----~ 388 (459)
T 2bvf_A 313 LWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAAPGSEK----Y 388 (459)
T ss_dssp EEEEEEECSCHHHHHHHHHTTGGGCEEETTTTEEEEEEEECCCCCCTTCCSSCCCSSCEEEEEEEECTTSTTTTH----H
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHH----H
T ss_conf 310132245625689999999999985477676489852354357732375555770489999861688855999----9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEC---CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999998189189973---555656888887317899999999988715377788
Q gi|254780761|r 411 NTINNIVYSVVLSYGGSIAAEH---GIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMN 468 (473)
Q Consensus 411 ~~i~~~~~~~~~~~gG~is~eH---GiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP~gilN 468 (473)
.++.+.+.+.+.+.++.-.++. .......+++.+.|+++.++-|++||+.|||+|+||
T Consensus 389 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~~rL~~lK~~~DP~~vF~ 449 (459)
T 2bvf_A 389 PELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFR 449 (459)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCGGGCSSCCHHHHHHHHCHHHHHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999998437678853551676434468998768889999999999779536778
No 10
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex; HET: FAD GHP 3MY 3FG OMY D3P BMA NAG BDP T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=100.00 E-value=0 Score=352.28 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=174.1
Q ss_pred CHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCC
Q ss_conf 98998773134013676687589954998999999999987298299975887776540104888669997630027742
Q gi|254780761|r 24 DQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRD 103 (473)
Q Consensus 24 d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~ 103 (473)
|+......+..|+..|+..|.+||+|+|++||+++|++|+++++||+|||||||..|++.+.. ++|+|||++||+| +
T Consensus 39 d~~y~~~~~~~~n~~~~~~P~~Vv~P~s~~dV~~~v~~A~~~~~~v~~rggGhs~~g~~~~~~--ggivIdl~~mn~I-~ 115 (523)
T 2wdx_A 39 DPRYLNLKLRGANSRFNGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPD--VKVIIDMSLLTEI-A 115 (523)
T ss_dssp STTHHHHHTCSSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCSSSSSSSTT--CCEEEECTTCCCE-E
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC--CEEEEECCCCCCE-E
T ss_conf 963566653203467678887899629999999999999987982999899867240843779--8799999789987-9
Q ss_pred CCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 11237345511442002222100123222344334321113112221235640001125733344433234666530211
Q gi|254780761|r 104 IDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNG 183 (473)
Q Consensus 104 id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~ 183 (473)
||+++++|+||||++|.+|+++|.++|+.+++++++. ..++||++++++.|..|.+||.+.|+|+++||||+||++...
T Consensus 116 vd~~~~~v~V~aGv~~~~l~~~l~~~g~~~~~~~~~~-~vg~gG~~~~gg~g~~s~~yG~~~D~V~~~evVladG~~~~~ 194 (523)
T 2wdx_A 116 YDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPGGVCG-GVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKAR 194 (523)
T ss_dssp EETTTTEEEECTTCBHHHHHHHHHHHHSCCCCCCCCT-TCBHHHHHHHTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEE
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEE
T ss_conf 8078998999678174999999997498564689999-776667127998777757767511004312489961550587
Q ss_pred EEEC--CCCCCCCCCCC-CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 2201--33223222333-22346545431012799404675443210000135
Q gi|254780761|r 184 MHKL--IKDNSRYDIRD-LLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNS 233 (473)
Q Consensus 184 ~~~~--~~~~~G~dl~~-l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~ 233 (473)
.... ..+..++||.. +..|++|+|||||++|+|++|.|+......+.+++
T Consensus 195 ~~~~~~~~~~~~~dLf~alr~g~~g~~GiIt~~~l~l~p~~~~~~~~~~~~~~ 247 (523)
T 2wdx_A 195 VIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPP 247 (523)
T ss_dssp EEEEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSSCCCSCGGGSSCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEECCCC
T ss_conf 64443034575728999998653200232799998501467603679941786
No 11
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=100.00 E-value=0 Score=332.55 Aligned_cols=193 Identities=18% Similarity=0.185 Sum_probs=166.8
Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCC--C-EEEEECCCCCCC-CCCCCCC
Q ss_conf 34013676687589954998999999999987298299975887776540104888--6-699976300277-4211237
Q gi|254780761|r 33 TEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNR--K-DIILSIKRMNRI-RDIDLRS 108 (473)
Q Consensus 33 ~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~--~-~vvld~~~mn~i-l~id~~~ 108 (473)
..|.+.++..|.+|++|+|++||+++|++|+++++||++||+|+|.+|++.+..+. . .+++||++||+| +++|++.
T Consensus 26 ~~w~~~~~~~P~~v~~P~s~~dV~~~v~~A~~~~~~v~~rg~Ghs~~g~s~~~~~~~~~~~~l~~~~~~~~i~~~~d~~~ 105 (561)
T 2i0k_A 26 QNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPV 105 (561)
T ss_dssp ECTTSSSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCEEEECCSSS
T ss_pred HCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECHHCCCCEEEEECCCC
T ss_conf 14468722587789957999999999999998798599988996777673179987435799830006676466456999
Q ss_pred CEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCC----------CCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 3455114420022221001232223443343211131122212356----------400011257333444332346665
Q gi|254780761|r 109 NTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAG----------GTAVLSYGNIRHLCLGIEAVLPTG 178 (473)
Q Consensus 109 ~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~----------G~~s~~yG~~~d~v~~~~vv~~~G 178 (473)
++||||||++|.+|+++|+++|+.+|.+|++. .+|+||.++++++ |..|.+||.+.|+|+++|||++||
T Consensus 106 ~~vtV~aG~~~~~l~~~L~~~g~~~~~~~~~~-~~tigG~~~~~~~g~g~~~ggg~g~~s~~~G~~~D~V~~~~vVladG 184 (561)
T 2i0k_A 106 ATVTAGAGASIEAIVTELQKHDLGWANLPAPG-VLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNG 184 (561)
T ss_dssp CEEEEETTSBHHHHHHHHHHTTEECSSCCSCT-TCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEEEEECS
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC-CCEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHCEEEEEEECCCC
T ss_conf 98999799799999999998387244223578-70360555666764244169988642035363623350479995899
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 30211220133223222333223465454310127994046754432100001
Q gi|254780761|r 179 DIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAV 231 (473)
Q Consensus 179 ~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f 231 (473)
+++++. ....+||...+.|+.|.|||||++|++++|.++........+
T Consensus 185 ~vv~~s-----~~~~~dLf~a~~gg~G~~Givt~~t~~~~p~~~~~~~~~~~~ 232 (561)
T 2i0k_A 185 TTYALE-----TYQRNDPRITPLLTNLGRCFLTSVTMQAGPNFRQRCQSYTDI 232 (561)
T ss_dssp SSEEEE-----EEETTSGGGHHHHSCTTSSCEEEEEEECEECCEEEEEEECCS
T ss_pred CEEEEC-----CCCCCCHHHHCCCCCCCCEEEEEEEEEEEECCEEEEEEEECC
T ss_conf 889964-----876421254124777752023038899851440689875024
No 12
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=100.00 E-value=0 Score=323.16 Aligned_cols=181 Identities=18% Similarity=0.222 Sum_probs=160.1
Q ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 34013676687589954998999999999987298299975887776540104888669997630027742112373455
Q gi|254780761|r 33 TEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIA 112 (473)
Q Consensus 33 ~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~ 112 (473)
+.|...+...|.+|++|+|++||+++|+.|. .|.+||+|+|..|++.+. .++|+|||++||+|+++|+++++|+
T Consensus 11 ~nW~~~~~~~P~~v~~P~s~~ev~~iv~~a~----~v~~rg~Ghs~~~~~~~~--~~gv~Idl~~ln~i~~vd~~~~~v~ 84 (422)
T 2vfr_A 11 TNWAGNITYTAKELLRPHSLDALRALVADSA----RVRVLGSGHSFNEIAEPG--DGGVLLSLAGLPSVVDVDTAARTVR 84 (422)
T ss_dssp BCSSSSCBCSCSSCBCCSSHHHHHHHHHHCS----SEEECSSCCCCSSTTCCC--TTCEEECSTTSCCCEEEETTTTEEE
T ss_pred CCCCCCEEECCCEEEECCCHHHHHHHHHCCC----CEEEECCCCCCCCCCCCC--CCEEEEECCCCCCCEEEECCCCEEE
T ss_conf 4689971118898995599999999997499----769981887888876878--9909998878998369958999999
Q ss_pred ECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 11442002222100123222344334321113112221235640001125733344433234666530211220133223
Q gi|254780761|r 113 VDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNS 192 (473)
Q Consensus 113 veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~ 192 (473)
||||++|.+|.++|.++|+.+|+.+ +....|+||+++++++|. +.+||.+.|+|+++|||+|||++++.. .
T Consensus 85 V~aG~~~~~l~~~L~~~Gl~~p~~~-~~~~~~iGG~~~~g~~G~-s~~~G~~~d~V~~~~vV~adG~vv~~s-------~ 155 (422)
T 2vfr_A 85 VGGGVRYAELARVVHARGLALPNMA-SLPHISVAGSVATGTHGS-GVGNGSLASVVREVELVTADGSTVVIA-------R 155 (422)
T ss_dssp EETTCBHHHHHHHHHHTTEECSCCC-SSSCSBHHHHHHHTCCCC-CTTCCCGGGGEEEEEEECTTSCEEEEE-------T
T ss_pred ECCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCEEEECCCCEEEEC-------C
T ss_conf 9388799999999985596236688-457634143342588878-778887542565308982588367953-------8
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 222333223465454310127994046754432100
Q gi|254780761|r 193 RYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAF 228 (473)
Q Consensus 193 G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~ 228 (473)
++||..++.||+|+|||||++|||++|.++.....+
T Consensus 156 ~~dLf~a~~Gg~G~fGIVt~~tl~~~p~~~~~~~~~ 191 (422)
T 2vfr_A 156 GDERFGGAVTSLGALGVVTSLTLDLEPAYEMEQHVF 191 (422)
T ss_dssp TSTTGGGTSSCTTTTCEEEEEEEECEECCEEEEEEE
T ss_pred CCCEEEECCCCCCCCEEEEEEEEEECCCCEEEEEEE
T ss_conf 860232105878761566899999415630489999
No 13
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=100.00 E-value=0 Score=315.40 Aligned_cols=211 Identities=13% Similarity=0.156 Sum_probs=171.5
Q ss_pred HHHHHCCCCCEECCHHHHHHHHCC---CCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCC
Q ss_conf 999733844186698998773134---01367668758995499899999999998729829997588777654010488
Q gi|254780761|r 11 RFISIVGSEGILDDQKLISPYLTE---ERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKN 87 (473)
Q Consensus 11 ~l~~i~g~~~v~~d~~~~~~~~~d---~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~ 87 (473)
+|.+.++...+..+......|..+ |...++..|.+||+|+|++||+++|++|+++++|+++||||+|..|++.+..
T Consensus 8 ~l~~~l~~~~~~~~~~~~~~y~~~~~~~n~~~~~~P~~Vv~P~s~~dV~~~V~~A~~~~~~v~vrggGHs~~~~~~~~~- 86 (503)
T 1zr6_A 8 SINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGE- 86 (503)
T ss_dssp HHHHHHHHTTCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTSS-
T ss_pred HHHHHHCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-
T ss_conf 9999856377258899857689998787534379962899739899999999999987974999889977788856688-
Q ss_pred CCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCC
Q ss_conf 866999763002774211237345511442002222100123-2223443343211131122212356400011257333
Q gi|254780761|r 88 RKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKN-HRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRH 166 (473)
Q Consensus 88 ~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~-g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d 166 (473)
.++|+|||++||+| ++|+ +.+|+||||++|.++.+.+.+. ++.++ .++....+|||++++++.|..|.+||.+.|
T Consensus 87 ~~gi~Idl~~ln~v-~vd~-~~~v~v~~G~~~~~~~~~~~~~~~~~~~--~g~~~~vgvgG~~~ggG~G~~s~~yGl~~D 162 (503)
T 1zr6_A 87 DGHLMLELDRMYRV-SVDD-NNVATIQGGARLGYTALELLDQGNRALS--HGTCPAVGVGGHVLGGGYGFATHTHGLTLD 162 (503)
T ss_dssp SSCEEEECTTCCCE-EECT-TSCEEEETTCBHHHHHHHHHHTTSEECC--CCSCTTSBHHHHHHHCCCSTTHHHHCCGGG
T ss_pred CCEEEEECCCCCCE-EECC-CCCEEEECCCCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf 99899998578987-9889-9988996783899999999975697047--878876656763457877601015898554
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 44433234666530211220133223222333223465454310127994046754432100001
Q gi|254780761|r 167 LCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAV 231 (473)
Q Consensus 167 ~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f 231 (473)
+|+++|||||||+|+++. ...+|||...+.|++|+|||||++|+|++|.|+......+.+
T Consensus 163 ~V~~~evVladG~iv~~s-----~~~n~DLf~AlrGggg~fGIVT~~tl~~~p~p~~~~~~~~~~ 222 (503)
T 1zr6_A 163 WLIGATVVLADASIVHVS-----ETENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTT 222 (503)
T ss_dssp GEEEEEEECTTSCEEEEB-----TTBSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEC-----CCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 476666562788679968-----999979999998633213237999999751797689999994
No 14
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=100.00 E-value=0 Score=310.59 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=166.3
Q ss_pred HHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECC--CCCEEEEECCCCCCCCCCCCC
Q ss_conf 731340136766875899549989999999999872982999758877765401048--886699976300277421123
Q gi|254780761|r 30 PYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRK--NRKDIILSIKRMNRIRDIDLR 107 (473)
Q Consensus 30 ~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~--~~~~vvld~~~mn~il~id~~ 107 (473)
.|+ .|.+.++..|.+|++|+|++||+++|++|.+++++|++||+|+|..|++.+.. ...+|+|||++||+|++||++
T Consensus 18 ~~~-~w~~~~~~~p~~v~~P~s~~dV~~~v~~A~~~~~~v~~rg~GHs~~g~~~~~g~~~~~~ivId~~~l~~i~~id~~ 96 (540)
T 3js8_A 18 SFK-NWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLTAMSIDAS 96 (540)
T ss_dssp EEE-CTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCSSCSSCCTTCSSCSEEEEETTTTCCCEEEECS
T ss_pred HHC-CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCEEECCC
T ss_conf 203-3357855788989946999999999999998898099988996766576478767787699992437883587066
Q ss_pred CC--EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCH----------HHHCCCCCCCCCCCCCCC
Q ss_conf 73--455114420022221001232223443343211131122212356400----------011257333444332346
Q gi|254780761|r 108 SN--TIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTA----------VLSYGNIRHLCLGIEAVL 175 (473)
Q Consensus 108 ~~--~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~----------s~~yG~~~d~v~~~~vv~ 175 (473)
+. +||||||++|.+|+++|+++|+.+|+.|. ...+||||+++++++|.. |.+||.+.|+|+++|||+
T Consensus 97 ~~~~~Vtv~aG~~~~~l~~~L~~~Gl~~~~~~~-~~~~tvgG~~~~~~~g~g~~~gGG~g~~s~~~G~~~d~V~~~~vVl 175 (540)
T 3js8_A 97 GPVAKVTAQAGITMEALLTGLEKAGLGVTAAPA-PGDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVV 175 (540)
T ss_dssp SSSEEEEEETTSBHHHHHHHHHHTTEECSCCCS-CSCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEE
T ss_conf 790799989998999999999982897666788-7975437861786774566589877655466364636188899996
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 66530211220133223222333223465454310127994046754432100001
Q gi|254780761|r 176 PTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAV 231 (473)
Q Consensus 176 ~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f 231 (473)
+||++.+.. ......+|+.....|+.|.+||||++||+++|.++.+....+.+
T Consensus 176 adG~~~~~~---~~~~~~~~~~~~~~g~~g~~GiVt~~tl~~~p~~~~~~~~~~~~ 228 (540)
T 3js8_A 176 YDKASGAYA---LRKFARNDPQIAPLLAHVGRSLIVEATLQAAPNQRLRCQSWFNI 228 (540)
T ss_dssp EETTTTEEE---EEEEETTSGGGHHHHTCTTSSCEEEEEEEEEECCEEEEEEECCS
T ss_pred CCCCEEEEE---ECCCCCCHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECC
T ss_conf 179720687---45777867789865315532035789999873730689877415
No 15
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus HB8}
Probab=99.98 E-value=2.9e-34 Score=233.10 Aligned_cols=130 Identities=22% Similarity=0.219 Sum_probs=119.6
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 42112373455114420022221001232223443343211131122212356400011257333444332346665302
Q gi|254780761|r 102 RDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIW 181 (473)
Q Consensus 102 l~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~ 181 (473)
+|||++++|++||||+++.+|+++|+++|+++| .|+|...+||||+|++|++| +||.++|+|+++++|+|||+++
T Consensus 1 ~ev~~~~~~~~v~~G~~~~~l~~~l~~~Gl~~p-~~~~~~~~tigG~ia~~~~g----~~g~~~d~v~~~~vv~~~G~~~ 75 (219)
T 2yvs_A 1 MEVHAADQYLVAPGEADLLEVHARLAGTGLFPP-FPPVELPGGVGGLVARGGFA----QTFFFPAEVLGLTFRTPKGRRV 75 (219)
T ss_dssp CEEETTTTEEEEETTCCHHHHHHHHTTTTEECS-SCSEECTTHHHHHHHTTCSS----BSSCGGGGEEEEEEECTTSCEE
T ss_pred CEECCCCCEEEECCCCCHHHHHHHHHHCCCEEC-CCCCCCCCEEEECCCCCCCC----CCCCHHHEEEEEEEECCCCCEE
T ss_conf 907655798999899859999999998798208-88666776266665359984----4773323787899992788889
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 1122013322322233322346545431012799404675443210000135268
Q gi|254780761|r 182 NGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQ 236 (473)
Q Consensus 182 ~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~ 236 (473)
+++++.+|+++||||.++|+||||||||||++||||+|.|+........|+++.+
T Consensus 76 ~~g~~~~~~~~g~dl~~l~~Gs~G~lGiit~~~l~l~P~p~~~~~~~~~~~~~~~ 130 (219)
T 2yvs_A 76 RAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSFPR 130 (219)
T ss_dssp EEECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSCCC
T ss_pred ECCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCHHH
T ss_conf 8088555555784456512667763178999999986089521664100346999
No 16
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=99.68 E-value=2.4e-16 Score=120.57 Aligned_cols=198 Identities=20% Similarity=0.320 Sum_probs=149.8
Q ss_pred CCCCHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 67898999999973384418669899877313401367668758995499899999999998729829997588777654
Q gi|254780761|r 2 NQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGG 81 (473)
Q Consensus 2 ~~~~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~ 81 (473)
..|++++++.|+++++.+.|..|+ .+..|++ ....+.+...+.|.|.+|+.+++++|.++++|+.+-|+|||+
T Consensus 12 ~~~~~~~~~~l~~~~~~~~i~~n~-pLs~~tT---~riGG~A~~~~~~~s~~dL~~~l~~~~~~~~p~~vLG~GSNl--- 84 (326)
T 1hsk_A 12 DPINKDIYQALQQLIPNEKIKVDE-PLKRYTY---TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNI--- 84 (326)
T ss_dssp ---CHHHHHHHHHHSCGGGEEEEE-EGGGTCT---TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSE---
T ss_pred CCCCHHHHHHHHHHCCCCCEEECC-CCCCCCE---EEECCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCE---
T ss_conf 720799999999657657488178-6766637---335808889997599999999999998749988999076415---
Q ss_pred CEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHC
Q ss_conf 01048886699976300277421123734551144200222210012322234433432111311222123564000112
Q gi|254780761|r 82 QIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSY 161 (473)
Q Consensus 82 ~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~y 161 (473)
.++..+-.|+|+.++.++.+ + .++..++|++|+.|.+|-+++..+|+. +.+.-+.--.||||.+.+|++. |
T Consensus 85 L~~D~g~~GvVI~l~~~~~~-~--~~~~~v~~~aG~~~~~lv~~~~~~gl~-GlE~L~gIPGTVGgAv~mNaGa-----y 155 (326)
T 1hsk_A 85 IIREGGIRGIVISLLSLDHI-E--VSDDAIIAGSGAAIIDVSRVARDYALT-GLEFACGIPGSIGGAVYMNAGA-----Y 155 (326)
T ss_dssp EECTTCEEEEEEECTTCCCE-E--EETTEEEEETTSBHHHHHHHHHHTTEE-SCGGGTTCCSBHHHHHHHTCEE-----T
T ss_pred EEECCCCCCEEEEECCCCCE-E--ECCCEEEEECCCCHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHCCCC-----C
T ss_conf 77358987449985146838-8--326338997187979999999975876-8313555675046777514788-----8
Q ss_pred CC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 57-3334443323466653021122013322322233322346545431012799404675
Q gi|254780761|r 162 GN-IRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR 221 (473)
Q Consensus 162 G~-~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p 221 (473)
|. +.|.|.+++++.++|++.+. .+....+.-++=..- ..--+|+.+++++.|..
T Consensus 156 G~ei~d~l~~V~~~d~~g~~~~~----~~~e~~F~YR~S~fk--~~~~ii~~~~~~~~~~~ 210 (326)
T 1hsk_A 156 GGEVKDCIDYALCVNEQGSLIKL----TTKELELDYRNSIIQ--KEHLVVLEAAFTLAPGK 210 (326)
T ss_dssp TEEHHHHEEEEEEECTTSCEEEE----ETTTTTCBTTBCHHH--HTTCEEEEEEEECEECC
T ss_pred CEEEEEEEEEEEEEECCCCEEEE----CCCEEEEEECCCCCC--CCCCEEEEEEEEECCCC
T ss_conf 50704178888998328948871----123022311156667--66752456899863673
No 17
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=99.55 E-value=5.9e-14 Score=105.63 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=122.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 76687589954998999999999987298299975887776540104888669997630027742112373455114420
Q gi|254780761|r 39 YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGIN 118 (473)
Q Consensus 39 ~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~ 118 (473)
-.+.+...+.|.|.+|+.+++++|+++++|+.+-|+|||+- ++....+.|++.+.+..++. .+.+..+++|+||+.
T Consensus 11 igg~A~~~~~~~s~~dL~~~l~~~~~~~~p~~vlG~GSNlL---~~D~~~g~Vi~~~~~~~~~~-~~~~~~~v~vgAG~~ 86 (340)
T 1uxy_A 11 IDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVL---FLEDYRGTVIINRIKGIEIH-DEPDAWYLHVGAGEN 86 (340)
T ss_dssp CCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEE---ECSCEEEEEEEECCCCEEEE-ECSSEEEEEEETTSB
T ss_pred CCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEEE---EECCCCCEEEEECCCCCEEE-ECCCCCEEEECCCCC
T ss_conf 68083199997999999999998887699889993708899---92797045999888883468-627862799723553
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCCCCC-CCCCCCEEEEEECCCCCCCCCC
Q ss_conf 022221001232223443343211131122212356400011257-33344433234-6665302112201332232223
Q gi|254780761|r 119 LFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGIEAV-LPTGDIWNGMHKLIKDNSRYDI 196 (473)
Q Consensus 119 ~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~~vv-~~~G~i~~~~~~~~~~~~G~dl 196 (473)
|.+|-+++..+|+. +.++-+.--.||||.+.+|++ -||. +.|.+.+++++ ..+|++.+. .++...+.-
T Consensus 87 ~~~lv~~~~~~gl~-GlE~l~gIPGTVGGAv~mNaG-----ayG~ei~d~l~~V~~~~~~~g~~~~l----~~~e~~f~Y 156 (340)
T 1uxy_A 87 WHRLVKYTLQEGMP-GLENLALIPGCVGSSPIQNIG-----AYGVELQRVCAYVDSVELATGKQVRL----TAKECRFGY 156 (340)
T ss_dssp HHHHHHHHHHTTCC-SCGGGTTCCSBGGGTTTTTCE-----ETTEEGGGTEEEEEEEETTTTEEEEE----ETGGGTCBT
T ss_pred HHHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHCCC-----CCCCCHHHEEEEEECEECCCCCEEEC----CHHHHCEEE
T ss_conf 89999999875055-501305646404334330687-----57865101023220100269968965----567706102
Q ss_pred CCCCCCCC-CCCCCEEEEEEEECCCCCC
Q ss_conf 33223465-4543101279940467544
Q gi|254780761|r 197 RDLLIGSE-GTLGIITGAVLRLLPYRTG 223 (473)
Q Consensus 197 ~~l~~Gse-GtlGiITevtlrl~p~p~~ 223 (473)
++-..-.+ ..-.+|++++++|.+.++.
T Consensus 157 R~S~fk~~~~~~~ii~~v~~~L~~~~~~ 184 (340)
T 1uxy_A 157 RDSIFKHEYQDRFAIVAVGLRLPKEWQP 184 (340)
T ss_dssp TBCGGGTTTTTTEEEEEEEEEEESSCCC
T ss_pred EEEECCCCCCCCEEEEEEEEECCCCCCH
T ss_conf 5521263345644689999860665441
No 18
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=99.50 E-value=8.8e-14 Score=104.51 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=124.8
Q ss_pred HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCC-CCCC
Q ss_conf 877313401367668758995499899999999998729829997588777654010488866999763002774-2112
Q gi|254780761|r 28 ISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIR-DIDL 106 (473)
Q Consensus 28 ~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il-~id~ 106 (473)
+..|.| ..-.+.+...+.|+|.+|+.+++++|+++++|+..-|+|||+- ++....++|++.+ ++.+. ..+.
T Consensus 19 L~~~tT---~~iGG~A~~~~~p~s~~dL~~~l~~~~~~~ip~~vlG~GSNlL---~~D~~~~~vi~~~--~~~~~~~~~~ 90 (357)
T 3i99_A 19 LKPYHT---FGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNML---FTCHYTGMIVVNR--LNGIEHQQDD 90 (357)
T ss_dssp SGGGST---TCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEE---ECSCEEEEEEEEC--CCCEEEEECS
T ss_pred CCCCCC---CCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECEEEEE---EECCCCCEEEEEC--CCCCEEEEEC
T ss_conf 766655---2538184099986999999999998987699889990617899---9569715699998--9873577506
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCCCCCC-CCCCCEEEE
Q ss_conf 373455114420022221001232223443343211131122212356400011257-333444332346-665302112
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGIEAVL-PTGDIWNGM 184 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~~vv~-~~G~i~~~~ 184 (473)
+..+++|+||+.|.+|-+++.++|+. +.++-+.--.||||.+.+|++- ||. +.|.|.+++++. .+|++.+..
T Consensus 91 ~~~~v~a~AG~~~~~l~~~~~~~gl~-GlE~L~GIPGTVGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~~g~~~~~~ 164 (357)
T 3i99_A 91 DYHRLHVAGGEDWPSLVSWCVEQGIG-GLENLALIPGCAGSAPIQNIGA-----YGVEFKDVCDYVEYLCLETGTVKRLT 164 (357)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHTTCT-TCGGGTTCCSBGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCHHHHHHCCCCC-----CCEEEEEEEEEEEEEECCCCCEEEEC
T ss_conf 87479993488599999999982899-8388975265222132205776-----74488753109987504567089943
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 20133223222333-223465454310127994046754
Q gi|254780761|r 185 HKLIKDNSRYDIRD-LLIGSEGTLGIITGAVLRLLPYRT 222 (473)
Q Consensus 185 ~~~~~~~~G~dl~~-l~~GseGtlGiITevtlrl~p~p~ 222 (473)
++...+.-++ .|-...-.-.||++++|++.+.++
T Consensus 165 ----~~e~~F~YR~S~fk~~~~~~~ii~~v~~~l~~~~~ 199 (357)
T 3i99_A 165 ----MEECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQ 199 (357)
T ss_dssp ----TGGGCCBTTBCGGGTTTTTTEEEEEEEEEEESSCC
T ss_pred ----HHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
T ss_conf ----78820124545455455520478899998657773
No 19
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=99.05 E-value=1.6e-09 Score=77.73 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=104.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCH
Q ss_conf 66875899549989999999999872982999758877765401048886699976300277421123734551144200
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINL 119 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~ 119 (473)
.+.++ +..|.+.+|+ ++..++|+..-|+||++- +.+.+-.++++.+++. ++..+..++|+||+.|
T Consensus 20 GG~a~-~~~~~~~~dl------~~~~~~p~~vlG~GSNlL---~~D~g~~g~vI~l~~~-----~~~~~~~~~v~AG~~~ 84 (268)
T 2gqt_A 20 GGPAE-LWTVETREEL------KRATEAPYRVLGNGSNLL---VLDEGVPERVIRLAGE-----FQTYDLKGWVGAGTLL 84 (268)
T ss_dssp CCEEE-EEEECSHHHH------HHHTTSCEEECSSSSSEE---ECTTCCSSEEEEECGG-----GGCBCTTSEEETTSBH
T ss_pred CCEEE-EEEECCHHHH------HHHHCCCCEEEECCEEEE---EECCCEEEEEEEEEEE-----CCCCCCCEEEECCCCH
T ss_conf 83899-9980999999------986389908992637899---9689980599996310-----2446543189638548
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 22221001232223443343211131122212356400011257-33344433234666530211220133223222333
Q gi|254780761|r 120 FNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRD 198 (473)
Q Consensus 120 ~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~ 198 (473)
.+|-+++.++|+. +.+.-+.--.||||.+.+|++- ||. +.|.|.++++. .+|++.... ++...+.-++
T Consensus 85 ~~l~~~~~~~gl~-GlE~l~gIPGTVGGAv~mNaGa-----yG~ei~~~l~sV~v~-~~g~~~~~~----~~e~~f~YR~ 153 (268)
T 2gqt_A 85 PLLVQEAARAGLS-GLEGLLGIPAQVGGAVKMNAGT-----RFGEMADALEAVEVF-HDGAFHVYC----PEELGFGYRK 153 (268)
T ss_dssp HHHHHHHHHTTEE-SCGGGTTCCCBHHHHHHTTCEE-----TTEEGGGGEEEEEEE-ETTEEEEEC----GGGSCCBTTB
T ss_pred HHHHHHHHHCCCH-HHEEECCCCCCHHHHHHCCCCC-----CCEEEEEEEEEEEEE-CCCCEEEEC----HHHCCCCCEE
T ss_conf 9999999981863-3224257884245565033577-----742937699999997-499789973----6981524011
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 223465454310127994046754
Q gi|254780761|r 199 LLIGSEGTLGIITGAVLRLLPYRT 222 (473)
Q Consensus 199 l~~GseGtlGiITevtlrl~p~p~ 222 (473)
-..- + -.||+++++++.+.++
T Consensus 154 S~~~-~--~~iil~~~~~l~~~~~ 174 (268)
T 2gqt_A 154 SHLP-P--GGIVTRVRLKLKERPK 174 (268)
T ss_dssp CCCS-T--TCEEEEEEECCEECCH
T ss_pred CCCC-C--CCCEEEEEEEECCCCH
T ss_conf 4578-8--8623789997146988
No 20
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.93 E-value=6.2e-06 Score=55.24 Aligned_cols=152 Identities=20% Similarity=0.249 Sum_probs=89.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 75899549989999999999872982999758877765401048886699976300277421123734551144200222
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNV 122 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l 122 (473)
|.-..+|.|.+|..++++-..+ ....+.+|||.+.-..-........+||++++...-.|..++..++++|++++.++
T Consensus 3 ~f~y~~P~sl~ea~~ll~~~~~--~~~~~laGGTdL~~~~~~~~~~p~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~i 80 (296)
T 3hrd_C 3 DFEFFAPKTLEEAKGLLHQYKD--VPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFTQI 80 (296)
T ss_dssp CCEEECCSSHHHHHHHHHHTTT--SCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHHHH
T ss_pred CCEEECCCCHHHHHHHHHHCCC--CCCEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCEEEEEECCHHHHH
T ss_conf 8436689999999999985899--89769989755999984187899969988878455536851643897231001143
Q ss_pred HHH--CCCCC-------CCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCC-----CCCCCCC--CCCCCEEEEEE
Q ss_conf 210--01232-------22344334321113112221235640001125733344-----4332346--66530211220
Q gi|254780761|r 123 QKI--AEKNH-------RLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLC-----LGIEAVL--PTGDIWNGMHK 186 (473)
Q Consensus 123 ~~~--l~~~g-------~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v-----~~~~vv~--~~G~i~~~~~~ 186 (473)
.+. +..+- ..+ -+|+=...+||||+|++.+. ..|.+ ++.++++ ++|+ +.
T Consensus 81 ~~~~~~~~~~p~L~~a~~~i-a~~qIRN~aTiGGNi~~a~p---------~~D~~~~Llal~A~v~l~s~~G~-----R~ 145 (296)
T 3hrd_C 81 ENHPFIRSHVRALYKAASQV-GSPQIRNLGTIGGNLSTSSV---------AGDGVSAMTTLDATVVLESVRGT-----RQ 145 (296)
T ss_dssp HHCHHHHHHCHHHHHHHHTS-SCHHHHHHCBHHHHHHHTCT---------TCHHHHHHHHTTCEEEEEETTEE-----EE
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCC---------CCCCCHHHHHHHHHEEEEECCCC-----EE
T ss_conf 32245554558999999740-88226988883475544686---------43345699985331589836994-----89
Q ss_pred CCCCCCCCCCCCCCCCCC-------CCCCCEEEEEEEEC
Q ss_conf 133223222333223465-------45431012799404
Q gi|254780761|r 187 LIKDNSRYDIRDLLIGSE-------GTLGIITGAVLRLL 218 (473)
Q Consensus 187 ~~~~~~G~dl~~l~~Gse-------GtlGiITevtlrl~ 218 (473)
+ .+.++|.|.. ..--|||++.+...
T Consensus 146 i-------~~~df~~g~~~~~~t~l~~~Eii~~I~iP~~ 177 (296)
T 3hrd_C 146 M-------KLTDFFDGEGFKRRNALEADEIMTEVIIDRP 177 (296)
T ss_dssp E-------EHHHHHHCCSSSSSSSCCTTCEEEEEEEECC
T ss_pred E-------EEHHHCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 8-------5034014676333454578857899996465
No 21
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=97.92 E-value=3.5e-05 Score=50.49 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=91.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 87589954998999999999987298299975887776540104888669997630027742112373455114420022
Q gi|254780761|r 42 TSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFN 121 (473)
Q Consensus 42 ~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~ 121 (473)
.|.-..+|.|.+|..++++-.+. ...+.+|||.+.-..-........+||++++...-.|..++..+++++++++.+
T Consensus 4 ~~F~y~~P~sl~Ea~~ll~~~~~---~a~~laGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~l~IGA~~t~~~ 80 (287)
T 1ffv_C 4 PRFEYHAPKSVGEAVALLGQLGS---DAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGSTVVIGAMTVEND 80 (287)
T ss_dssp CCCEEECCSSHHHHHHHHHHHGG---GEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEEETTEEEEETTCBHHH
T ss_pred CCCCEECCCCHHHHHHHHHHHCC---CCEEEEECCCHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEECCCCHHHHH
T ss_conf 99616798999999999885199---988997065089997347678886998877667766998595476162144999
Q ss_pred HHHHC--CCCC-------CCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCCCCCCCCCEEEEEEC
Q ss_conf 22100--1232-------2234433432111311222123564000112573334-----44332346665302112201
Q gi|254780761|r 122 VQKIA--EKNH-------RLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEAVLPTGDIWNGMHKL 187 (473)
Q Consensus 122 l~~~l--~~~g-------~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~vv~~~G~i~~~~~~~ 187 (473)
+.+.- ..+- ..+ -+|+-...+||||+|++.+.. .|+ .++.++++.+++-. +.+
T Consensus 81 l~~~~~~~~~~p~L~~a~~~i-a~~qIRN~aTiGGNi~~a~p~---------~D~~~~Llal~A~v~l~s~~g~---R~v 147 (287)
T 1ffv_C 81 LISSPIVQARLPLLAEAAKLI-ADPQVRNRGTIGGDIAHGDPG---------NDHPALSIAVEAHFVLEGPNGR---RTV 147 (287)
T ss_dssp HHHCHHHHHHCHHHHHHGGGS-SCTTGGGTCBHHHHHHTCCTT---------CSHHHHHHHTTCEEEEEETTEE---EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCHHEEEEEEECCCCEECCCC---------CCHHHHHHHHHHHEEEEECCCC---EEE
T ss_conf 865467788879999998622-872047641405720346876---------4257799885201178624772---798
Q ss_pred CCCCCCCCCCCCCCCCCCC----CCCEEEEEEEEC
Q ss_conf 3322322233322346545----431012799404
Q gi|254780761|r 188 IKDNSRYDIRDLLIGSEGT----LGIITGAVLRLL 218 (473)
Q Consensus 188 ~~~~~G~dl~~l~~GseGt----lGiITevtlrl~ 218 (473)
.+.++|.|..-| --+||++.+...
T Consensus 148 -------~~~df~~g~~~t~l~~~Eil~~I~iP~~ 175 (287)
T 1ffv_C 148 -------PADGFFLGTYMTLLEENEVMVEIRVPAF 175 (287)
T ss_dssp -------ESTTTEEETTEESCCTTCEEEEEEEECC
T ss_pred -------EHHHHCCCCCCCCCCCCCEEEEEEECCC
T ss_conf -------8788254643532578866999993157
No 22
>3nrz_B Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine, substrate orientation, hydro oxidoreductase; HET: FAD MTE HPA; 1.80A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B*
Probab=97.79 E-value=2e-05 Score=52.06 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=70.0
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 58995499899999999998729829997588777654010488866999763002774211237345511442002222
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQ 123 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~ 123 (473)
.--++|.|.+|..++++ +++= ..+.+|||++.-..--......++||++++.....|..++..++++|++++.+++
T Consensus 11 ~t~~~P~sl~Ea~~ll~---~~~~-a~~vaGGT~l~~~~~~~~~~~~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~l~ 86 (305)
T 3nrz_B 11 VTWIQASTLKELLDLKA---QHPE-AKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVE 86 (305)
T ss_dssp CEEEECCSHHHHHHHHH---HCTT-CEECSSCTTHHHHHHHSCCCCSEEEECTTCSSSSCEEECSSEEEEETTCBHHHHH
T ss_pred EEEECCCCHHHHHHHHH---HCCC-CEEEECCHHHHHHHHCCCCCCCEEEECCCCHHHCCEEECCCEEEECCCEEHHHHH
T ss_conf 59976796999999997---6899-8799746189999853889999799889986766379669988724623589999
Q ss_pred HHCCCC--------CCCCC---------CCCCCCCCCCCHHHHHCCC
Q ss_conf 100123--------22234---------4334321113112221235
Q gi|254780761|r 124 KIAEKN--------HRLFP---------LSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 124 ~~l~~~--------g~~~p---------~~p~s~~~aTvGG~ia~~~ 153 (473)
+.+... ...|| -+|+=...+||||+|++.+
T Consensus 87 ~~~~~~~~~l~~~~~~~~p~l~~a~~~va~~qIRN~aTiGGNl~~a~ 133 (305)
T 3nrz_B 87 KTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITAS 133 (305)
T ss_dssp HHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHEEEEEEEHHHHCCC
T ss_conf 87887643131777776099999999757985666788502431378
No 23
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=97.74 E-value=2.3e-05 Score=51.65 Aligned_cols=105 Identities=14% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCC-CCCCEEEECCCCCHHH
Q ss_conf 758995499899999999998729829997588777654010488866999763002774211-2373455114420022
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDID-LRSNTIAVDAGINLFN 121 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id-~~~~~v~veaGv~~~~ 121 (473)
+.-..+|.|.+|..+++. +++ -.+.+|||.+....--.......+||++++...-.|. ..++.++++|.+++.+
T Consensus 6 ~F~y~~P~sl~EAl~ll~---~~~--a~~lAGGTdL~~~~~~~~~~p~~lIdl~~I~eL~~I~~~~dg~l~IGA~vt~~~ 80 (324)
T 1rm6_B 6 DFRTHRPATLADAVNALA---AEA--TLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLADGSLRIGAGATLEA 80 (324)
T ss_dssp CCEEECCSSHHHHHHHTT---STT--EEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCEEECTTSCEEEETTCBHHH
T ss_pred CCEEECCCCHHHHHHHHC---CCC--CEEEECCCCHHHHHHCCCCCCCEEEECCCCHHHCCEEECCCCCEEEEEECCHHH
T ss_conf 945878899999999961---899--959987868899983688899989989898676827987899689814210145
Q ss_pred HHHH--CCCCC-------CCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 2210--01232-------22344334321113112221235
Q gi|254780761|r 122 VQKI--AEKNH-------RLFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 122 l~~~--l~~~g-------~~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
+++. +..+. ..+ -+|+=...+||||+|+++.
T Consensus 81 l~~~~~i~~~~p~L~~a~~~i-as~qIRN~aTiGGNl~~~~ 120 (324)
T 1rm6_B 81 IAEHDAIRTTWPALAQAAESV-AGPTHRAAATLGGNLCQDT 120 (324)
T ss_dssp HHHCHHHHHHSHHHHHHHHHS-SCHHHHHHCBHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCHHHHCEEEECCCCCCCC
T ss_conf 434167777778999998742-8865600433033111567
No 24
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=97.63 E-value=7.4e-05 Score=48.47 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 87589954998999999999987298299975887776540104888669997630027742112373455114420022
Q gi|254780761|r 42 TSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFN 121 (473)
Q Consensus 42 ~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~ 121 (473)
.|.-..+|.|.+|..+++.- .-+. .+.+|||.+.-..-........+||+++......+..++..++++|++++.+
T Consensus 4 ~~F~y~~P~sl~Ea~~ll~~--~~~a--~~lAGGTdl~~~~~~~~~~p~~lIdl~~I~eL~~i~~~~~~l~IGA~vt~~~ 79 (288)
T 1t3q_C 4 PAFSYRAPASLQEVIQVLAD--DPDA--RIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFR 79 (288)
T ss_dssp CCCEEECCSSHHHHHHHHHH--CTTC--EEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEEETTCBHHH
T ss_pred CCCEEECCCCHHHHHHHHHH--CCCC--EEEEECCCHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCEEEEECCCCHHH
T ss_conf 98116588999999999976--8998--7998264489997357789986898677866632785597699822300566
Q ss_pred HHHH--CCCCCCCCC------CCCCCCCCCCCHHHHHCCC
Q ss_conf 2210--012322234------4334321113112221235
Q gi|254780761|r 122 VQKI--AEKNHRLFP------LSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 122 l~~~--l~~~g~~~p------~~p~s~~~aTvGG~ia~~~ 153 (473)
+.+. +.++.-.+. -+|+=...+||||+|++.+
T Consensus 80 l~~~~~~~~~~p~l~~a~~~ias~qIRN~aTiGGNi~~a~ 119 (288)
T 1t3q_C 80 NKTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHAD 119 (288)
T ss_dssp HHHCHHHHHHCTHHHHHHTTSSCHHHHTTCBHHHHHHHTC
T ss_pred HHHCHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCEEECC
T ss_conf 6539575635689999998518930041201266013357
No 25
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=97.61 E-value=9e-05 Score=47.96 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=70.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 87589954998999999999987298299975887776540104888669997630027742112373455114420022
Q gi|254780761|r 42 TSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFN 121 (473)
Q Consensus 42 ~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~ 121 (473)
.|.-..+|.|.+|..++++-.+.. ..+.+|||.+....-........+||++++.....|..++..+++++++++.+
T Consensus 4 ~~F~y~~P~tl~Ea~~ll~~~~~~---a~~laGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~l~iGa~vt~~~ 80 (288)
T 1n62_C 4 GSFDYHRPKSIADAVALLTKLGED---ARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHA 80 (288)
T ss_dssp CCCEEECCSSHHHHHHHHHHHGGG---EEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCEEEETTEEEEETTCBHHH
T ss_pred CCCCEECCCCHHHHHHHHHHHCCC---CEEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEEECCCCHHHH
T ss_conf 986366989999999999851999---88999454799998558899996998988757663887486799812654999
Q ss_pred HHHH--CCCCC-------CCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 2210--01232-------22344334321113112221235
Q gi|254780761|r 122 VQKI--AEKNH-------RLFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 122 l~~~--l~~~g-------~~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
+.+. +..+. ..+ -+|+=...+||||+|++.+
T Consensus 81 l~~~~~~~~~~p~l~~a~~~i-a~~qIRN~aTiGGNi~~a~ 120 (288)
T 1n62_C 81 LIGSDFLAAKLPIIRETSLLI-ADPQIRYMGTIGGNAANGD 120 (288)
T ss_dssp HHHCHHHHHHCHHHHHHHTTS-SCHHHHHHCBHHHHHHSCC
T ss_pred HHCCHHHHHHCHHHHHHHHHC-CCHHHCCCEEECCCCCCCC
T ss_conf 861645543565999998711-8997801002357222557
No 26
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.59 E-value=0.00014 Score=46.65 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=69.6
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 99549989999999999872982999758877765401048886699976300277421123734551144200222210
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~ 125 (473)
..+|.|.+|+.++++- +.= .....|||++.-..--.......++|+++......|..++..++++|++++.++.+.
T Consensus 180 ~~~P~tl~el~~ll~~---~p~-a~ivaGGTdl~~~~~~~~~~~~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~~~~~~ 255 (462)
T 2w3s_A 180 AFLPETSDALADWYLA---HPE-ATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVTIAALRAF 255 (462)
T ss_dssp CBCCSSHHHHHHHHHH---CTT-CEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCEEEETTEEEEETTCBHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH---CCC-CEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEECCCCEEECHHHHHHHHHHH
T ss_conf 4178999999999976---998-689945716763210144688606886133423058982895897425557889998
Q ss_pred CCCCCCCCC------CCCCCCCCCCCHHHHHCCC
Q ss_conf 012322234------4334321113112221235
Q gi|254780761|r 126 AEKNHRLFP------LSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 126 l~~~g~~~p------~~p~s~~~aTvGG~ia~~~ 153 (473)
+..+.-.+. -+|+=...+||||+|++.+
T Consensus 256 ~~~~~p~L~~~l~~ias~qIRN~aTIGGNl~~as 289 (462)
T 2w3s_A 256 AEGPHPALAGLLRRFASEQVRQVATIGGNIANGS 289 (462)
T ss_dssp HTTTCHHHHHHHTTSSCHHHHTTCBHHHHHHHTC
T ss_pred HHCCHHHHHHHHHHHCCCCEEEEECCCCHHHCCC
T ss_conf 6423799999998537661675401432422078
No 27
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=96.81 E-value=0.00051 Score=43.19 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=68.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 89954998999999999987298299975887776540104888669997630027742112373455114420022221
Q gi|254780761|r 45 LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQK 124 (473)
Q Consensus 45 ~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~ 124 (473)
--.+|.|.+|+.+++.-- -+..+ ..|||.+.=..--......++||+++......|..++..++++|++++.++++
T Consensus 235 ~~~~P~sl~el~~l~~~~--~~a~l--vaGgTdl~~~~~~~~~~~~~~I~~~~i~eL~~i~~~~~~l~iGA~vtl~~~~~ 310 (1332)
T 1v97_A 235 TWIQASTLKELLDLKAQH--PEAKL--VVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACALSSVEK 310 (1332)
T ss_dssp EEEECCSHHHHHHHHHHC--TTCEE--CSSCTTHHHHHHHSCCCCSEEEECTTCGGGTCEEECSSEEEEETTCBHHHHHH
T ss_pred EEECCCCHHHHHHHHHHC--CCCEE--EEECCHHHHHHHCCCCCCCEEEECCCCHHHHCEEECCCCEEEEEEEEHHHHHH
T ss_conf 586779799999999868--99789--99764477642313688996997688856621796599179911228999999
Q ss_pred HCCCCC--------CCCC---------CCCCCCCCCCCHHHHHCCC
Q ss_conf 001232--------2234---------4334321113112221235
Q gi|254780761|r 125 IAEKNH--------RLFP---------LSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 125 ~l~~~g--------~~~p---------~~p~s~~~aTvGG~ia~~~ 153 (473)
.+...- ..|| -+++=...+||||+|++.+
T Consensus 311 ~l~~~~~~l~~~~~~~~~~l~~~~~~~as~qIRN~aTigGNi~~as 356 (1332)
T 1v97_A 311 TLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITAS 356 (1332)
T ss_dssp HHHHHHHHSCGGGCHHHHHHHHHHHTSSCHHHHTTCBHHHHHHHCC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEECC
T ss_conf 9999876444034567899999999855565412310123323157
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=84.11 E-value=0.67 Score=23.62 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=42.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.+|.+.+--||..+| ..+|-|+++.+---+.-..+...|+.|.+.++|..+++.+.
T Consensus 21 ~nLp~~~~e~~L~~~F----~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 77 (105)
T 2dnh_A 21 GMLNKQQSEEDVLRLF----QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7999848999999999----85398689998578999816379999897999999999867
No 29
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.20 E-value=0.75 Score=23.32 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=42.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|+.+.+...+.-..+.+.++.|.+.++|..|+..+.
T Consensus 21 ~nLp~~~te~~L~~~F----~~~G~i~~~~i~~~~~g~~kG~afV~f~~~~~A~~Ai~~ln 77 (114)
T 2do0_A 21 ANLDYKVGWKKLKEVF----SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 0899988999999999----97098017988656899837625988699999999999849
No 30
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.11 E-value=1.2 Score=22.00 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=42.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..++.+.+--||..+| ..+|-|+++.+-.-+.-+.+.+.|+.|.+.++|..++..+.
T Consensus 31 ~nLp~~~t~~~l~~~F----~~~G~v~~v~i~~d~~g~~rg~aFV~f~~~e~A~~Ai~~ln 87 (114)
T 1x5o_A 31 SNLPLSMDEQELENML----KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp ESCCTTCCHHHHHHTT----TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 5999989999999999----97598767655377999841069999898999999999848
No 31
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=79.68 E-value=1.2 Score=22.03 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=41.2
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+|...+--||..+| +.+|-|+.+.+..-+--+.+.+.++.|.+.++|..++..+.
T Consensus 23 nlp~~~t~~~l~~~F----~~~G~v~~~~i~~d~~g~~kg~afV~f~~~~~a~~Ai~~ln 78 (95)
T 2ywk_A 23 NLEARVREEILYELF----LQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp CCCTTCCHHHHHHHH----GGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHC
T ss_conf 999979899999999----86399899987644678566779999899999999999848
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=79.66 E-value=1 Score=22.55 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=41.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+-.||..+| ..+|-|.++.|..-+-.+.+.++|+.|.+.++|..|+..+.
T Consensus 13 ~nLp~~~te~~L~~~F----~~~G~v~~v~i~~~~~g~~kG~aFV~f~~~e~A~~Ai~~~~ 69 (116)
T 2fy1_A 13 GGLNRETNEKMLKAVF----GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 (116)
T ss_dssp ECCTTTCCHHHHHHHH----HTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 7989989999999999----87397538877556999958825999799999999999849
No 33
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, structural genomics PSI-2, protein structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=79.35 E-value=0.89 Score=22.87 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=34.8
Q ss_pred CCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 1123734551144200222210012322234433432111311222123
Q gi|254780761|r 104 IDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 104 id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
|-.++++-.|.+.+.+.+|++.+. ..+|.+..+..+-|||||+-..
T Consensus 4 v~r~dg~~~v~G~~~l~dl~~~l~---~~~~~~~~~~~~~Tl~G~v~~~ 49 (86)
T 2pls_A 4 VQREDGSWLLDGLIAVPELKDTLG---LRAVPEEEKGVYHTLSGMIMWL 49 (86)
T ss_dssp EECTTSCEEEETTCBHHHHHHHHT---CSCCTTTTSCSCCBHHHHHHHH
T ss_pred EEECCCEEEEECCCCHHHHHHHHC---CCCCCCCCCCCCCCHHHHHHHH
T ss_conf 792599799981479999999878---8998612256754399999997
No 34
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=79.24 E-value=0.85 Score=23.00 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=42.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++++.+.+..||..+| +.+|-|.++.|..-+.-+.+-++++.|.+.++|..|+..+.
T Consensus 94 ~NLp~~vte~dL~elF----~~~G~V~~v~i~~d~~grskG~afV~F~~~~~A~~Ai~~l~ 150 (177)
T 2f3j_A 94 SNLDFGVSDADIQELF----AEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp ECCCSCCCHHHHHHHH----HHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 8999988899999999----87499479999866787354468999799999999999858
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.76 E-value=1.1 Score=22.40 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=41.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|+++.+..-+ ...+.++|+.|.+.++|..|+..+.
T Consensus 21 ~nLp~~~te~~l~~~F----~~~G~i~~v~i~~d~-~~~~~~afV~f~~~~~A~~Ai~~~~ 76 (103)
T 2cqi_A 21 GNLSRDVTEVLILQLF----SQIGPCKSCKMITEH-TSNDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp ESCCTTCCHHHHHHHH----HHHSCEEEEEEECCC-CSSCCEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEECCC-CCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 7999868899999999----871988897550268-7656527999899999999999839
No 36
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=77.66 E-value=1.7 Score=21.14 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999998729829997
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
=|.+|+.+|+++|.+++|-|+|-
T Consensus 92 YT~~di~eiv~yA~~rgI~VIPE 114 (367)
T 1yht_A 92 LSYRQLDDIKAYAKAKGIELIPE 114 (367)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 48999999999999869889754
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.43 E-value=1.5 Score=21.38 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=41.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| +.+|-|..+.+..-+.-..+.+.++.|.+.++|..++..+.
T Consensus 23 ~nlp~~~t~~~l~~~f----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~ln 79 (100)
T 2do4_A 23 SGLPFSCTKEELEEIC----KAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 6999869899999999----98699637999860179745079999898999999999829
No 38
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.39 E-value=2.9 Score=19.68 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCC---CCCCCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHH
Q ss_conf 332346665302112201332232223---33223465454310127994046754----43210000135268999997
Q gi|254780761|r 170 GIEAVLPTGDIWNGMHKLIKDNSRYDI---RDLLIGSEGTLGIITGAVLRLLPYRT----GKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 170 ~~~vv~~~G~i~~~~~~~~~~~~G~dl---~~l~~GseGtlGiITevtlrl~p~p~----~~~~~~~~f~~~~~a~~~~~ 242 (473)
+++++-.+ .|. -..++.+.+.-|| ..+| +.+|-|.++.+...+..+ .+...|+.|.+.++|..|+.
T Consensus 9 ~~rvi~~n-~Vy--V~nL~~~~~~~dl~k~~e~F----~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~F~~~~~A~~Ai~ 81 (111)
T 2cpi_A 9 SVRVVQKN-LVF--VVGLSQRLADPEVLKRPEYF----GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQ 81 (111)
T ss_dssp CCCCCCSS-CEE--EEEECTTTCCHHHHHSTTTT----TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHH
T ss_pred CEEEEECC-EEE--ECCCCCCCCHHHHHHHHHHH----HCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 66898678-699--90899774726788999998----413877414786420431011587179999899999999999
Q ss_pred HHC
Q ss_conf 510
Q gi|254780761|r 243 LSQ 245 (473)
Q Consensus 243 ~~~ 245 (473)
.+.
T Consensus 82 ~ln 84 (111)
T 2cpi_A 82 CVN 84 (111)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 868
No 39
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.38 E-value=0.97 Score=22.62 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=41.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCC-CEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543-1012799404675-443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLG-IITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlG-iITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+-.||.++| ..+| +|.++.+...+.+ ..+.+.++.|.+.++|..+++.+.
T Consensus 15 gnL~~~~te~~L~~~F----~~~G~~v~~~~i~~~~~~~~~~g~afV~F~~~e~A~~Ai~~ln 73 (99)
T 2div_A 15 GDLEPYMDENFISRAF----ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 73 (99)
T ss_dssp CSCCTTCCHHHHHHHH----HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7989968899999999----6479768899998649999847747899799999999999868
No 40
>1no8_A ALY; RBD, REF1-I, BEF, mRNA export factor, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.92 E-value=1.2 Score=22.14 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=41.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++.+.+.+--||..+| ..+|-|.++.|..-+.-..+.+.++.|.+.++|..|+..+.
T Consensus 34 ~nLp~~~~~~~l~~~F----~~~G~v~~~~i~~d~~g~~~g~afV~f~~~~~A~~Ai~~ln 90 (106)
T 1no8_A 34 SNLDFGVSDADIQELF----AEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 90 (106)
T ss_dssp ESCCTTCCHHHHHHHH----HHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 8979978899999999----87199899987305789857748999899999999999838
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.54 E-value=1.3 Score=21.88 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=41.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-||..+| ..+|-|+++.+...+. ...+.+.++.|.+.++|..+++.+.
T Consensus 14 ~nL~~~~te~~l~~~F----~~~G~I~~v~i~~d~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 71 (99)
T 1whw_A 14 RNLSYTSSEEDLEKLF----SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp ECCCTTCCHHHHHHHH----HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 7989989999999999----975988789886237888747469999898999999999839
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.97 E-value=2.1 Score=20.45 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=41.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|.++.+.. .....+.+.|+.|.+.++|..++..+.
T Consensus 21 ~nLp~~~te~~L~~~F----~~~G~i~~~~i~~-~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 21 KNLDDGIDDERLRKAF----SPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp ECCCTTCCHHHHHHTT----TTTSCEEEEEEEE-CSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCEEEEEEC-CCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 6999989899999999----9709951899974-389857679999899999999999819
No 43
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.86 E-value=2.4 Score=20.12 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 653021122013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 177 TGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 177 ~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
.|-.+.. +.+|.+.+.-||.++|- .+|+ +++.+...+.-..+-.+++.|.+.++|..++.
T Consensus 14 ~g~~v~v-~nLP~~~teedl~~~F~----~~gi-~~v~i~~~~~g~~kG~aFVeF~~~e~A~~Al~ 73 (102)
T 1wez_A 14 TGHCVHM-RGLPYRATENDIYNFFS----PLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SSCEEEE-ESCCTTCCHHHHHHSSC----SCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCCEEEE-ECCCCCCCHHHHHHHHH----CCCC-EEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 8738998-49899898999999850----6684-89999757899836489999839999999996
No 44
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.60 E-value=1.2 Score=22.03 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=38.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+++|...+.-||..+| ..+|-|+.+.| ++.+.+.++.|.+.++|..|+..+.
T Consensus 16 ~NLp~~~t~~~L~~~F----~~~G~I~~v~i-----~~~rg~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 16 KNLPAGTLAAEIQETF----SRFGSLGRVLL-----PEGGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSCEEEEEC-----CSSSSCEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEE-----CCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7998989899999998----56394689998-----1789669999899999999999878
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.85 E-value=2.4 Score=20.16 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=40.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+-.||..+| ..+|-|.++.+..-+. -..+.+.++.|.+.++|..++..+.
T Consensus 11 ~nLp~~~te~~l~~~f----~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ai~~l~ 68 (95)
T 2dnz_A 11 GSLHFNITEDMLRGIF----EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 2999968899999999----974988999986137888767529999999999999999819
No 46
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=73.04 E-value=2.1 Score=20.50 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=42.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-||.++| ..+|-|+.+.+...+. ...+-+.|+.|.+.++|..+++.+.
T Consensus 31 ~nLp~~~te~~l~~~F----~~~G~i~~~~~~~~~~~g~~rG~afV~f~~~~~A~~Al~~l~ 88 (115)
T 2cpz_A 31 YHLPQEFGDQDLLQMF----MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp ESCCSSCCHHHHHHHH----GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HCCCCEEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 3999979899999998----436857773555644789746646999889999999999848
No 47
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.88 E-value=2.3 Score=20.32 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=42.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-54432100001352689999975
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
+.+|.+.+--||..+| ..+|-|+.+.|..-+. -..+.+.|+.|.+.++|.+++..
T Consensus 21 ~nLp~~~te~~L~~~F----~~~G~I~~v~i~~d~~tg~~rG~aFV~f~~~~~a~~ai~~ 76 (103)
T 2cqg_A 21 LGLPWKTTEQDLKEYF----STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp ESCCSSCCHHHHHHHH----GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHC
T ss_conf 7999989999999999----7249889999864068886245799998889999999874
No 48
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=72.78 E-value=1.7 Score=21.14 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=40.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++...+--||..+| ..+|-|.++.|..-+. ...+.++|+.|.+.++|..|+..+.
T Consensus 28 ~nLp~~~~e~~l~~~F----~~~G~v~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~ 85 (126)
T 3ex7_B 28 TGVHEEATEEDIHDKF----AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 8899988899999999----864977897540334578767767999899999999999828
No 49
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.47 E-value=1.7 Score=21.12 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=40.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCC-CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543-1012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLG-IITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlG-iITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+-.+|..+|- .+| ++..+.+.-.+....+.+.++.|.+.++|..|+..+.
T Consensus 15 ~nLp~~~te~~l~~~F~----~~g~~~~~~~~~~~~~g~~~g~afV~f~~~e~A~~Ai~~ln 72 (104)
T 2dhg_A 15 GDLTPDVDDGMLYEFFV----KVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp ECCCTTCCHHHHHHHHH----HHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHHH----HHCCCCEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 48998488999999986----53356316998667999847824789899999999999817
No 50
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=71.96 E-value=4.3 Score=18.53 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=47.0
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 32346665302112201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 171 IEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 171 ~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
-++--|.|.-+-. ++.+.+.+--||.++| ..+|-|.++.+..-+. -+.+.+.++.|.+.++|..++..+.
T Consensus 33 ~~~~~p~~~~l~V-~nLp~~~t~~~l~~~F----~~~G~v~~~~i~~d~~tg~~kg~afV~f~~~e~A~~Ai~~ln 103 (118)
T 2khc_A 33 KQIEGPEGCNLFI-YHLPQEFTDTDLASTF----LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN 103 (118)
T ss_dssp SSCCCCCSEEEEE-ECSCTTCCHHHHHHHT----TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred CCCCCCCCCEEEE-CCCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7677999989998-5899969899999999----835987999998866889746717999899999999999858
No 51
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=71.65 E-value=2.9 Score=19.60 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=7.6
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999887153777
Q gi|254780761|r 452 KIMKKIKEIFDPAGI 466 (473)
Q Consensus 452 ~~l~~iK~~~DP~gi 466 (473)
.-|...+..++-.||
T Consensus 476 ~Rl~~~~~~l~~~Gi 490 (507)
T 2gjx_A 476 ERLSHFRCELLRRGV 490 (507)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999997799
No 52
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.45 E-value=2.6 Score=19.95 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=41.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012-799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITG-AVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITe-vtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..+|.+.+--||..+| ..+|.+.+ +.+...+....+...++.|.+.++|..++..+.
T Consensus 21 ~nLp~~~t~~dl~~~F----~~~g~~~~~v~~~~~~~g~~~G~afV~f~~~e~A~~Ai~~l~ 78 (98)
T 2cqp_A 21 QNMPFTVSIDEILDFF----YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (98)
T ss_dssp ESCCTTCCHHHHHHHT----TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 2979989899999999----972986179998348987865279999899999999999829
No 53
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.43 E-value=2.8 Score=19.76 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCH-HHHHHHHHHH
Q ss_conf 66530211220133223222333223465454310127994046754432100001352-6899999751
Q gi|254780761|r 176 PTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSL-EQALQLLQLS 244 (473)
Q Consensus 176 ~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~-~~a~~~~~~~ 244 (473)
+.|.++.--+.++.+.+.-||..+| +.+|=|..+.+ ++.+...|+.|.+- ++|.+++...
T Consensus 16 ~~G~~l~FvGnL~~~~teedLk~~F----~~fG~I~~V~i-----~k~kg~aFV~F~~~~~aA~~a~~~~ 76 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILF----SNHGEIKWIDF-----VRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHT----CSSCCEEEEEC-----CTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHH----HCCCCEEEEEE-----ECCCCEEEEEEECHHHHHHHHHHHH
T ss_conf 8887699983999888899999986----33586039998-----8799879999803787799999985
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.42 E-value=1.8 Score=20.88 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=41.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-544321000013526899999751
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+.++.+.+.-||..+| ..+|-|.++.|-.-+. -+.+.++++.|.+.++|.+++...
T Consensus 23 ~nLp~~~te~~l~~~F----~~~G~v~~v~i~~d~~tg~~kg~afV~f~~~~~a~~Al~~~ 79 (116)
T 2cqd_A 23 GGLPYHTTDASLRKYF----EGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 79 (116)
T ss_dssp ECCCSSCCHHHHHHHH----HTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCCCCEEECCCCCCCCCEEEEEECCHHHHHHHHHHC
T ss_conf 7979989899999999----98596653330000346840417999979899999999978
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing, alternative splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=70.24 E-value=3 Score=19.58 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=41.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675-443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+--+|..+| ..+|-|+++.+...+.. ..+..+++.|.+.++|..|+..+.
T Consensus 29 ~nL~~~~~e~~L~~~F----~~~G~I~~v~i~~~~~tg~~~g~~fV~f~~~~~A~~Ai~~l~ 86 (106)
T 1p27_B 29 TGVHEEATEEDIHDKF----AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp ECCCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHHCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 6899989999999999----862988999750577762558845999899999999999848
No 56
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.91 E-value=2.7 Score=19.79 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=41.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|.++.+...+. .+.+.+.++.|.+.++|..++..+.
T Consensus 21 ~nLp~~~te~~l~~~F----~~~G~v~~v~~~~d~~t~~~~g~afV~f~~~~~A~~Ai~~l~ 78 (95)
T 2cqc_A 21 FGLSLYTTERDLREVF----SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp ESCCSSCCHHHHHHHH----HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 1999989899999999----871977998750356766656668999899999999999819
No 57
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.85 E-value=4.4 Score=18.49 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=40.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+-.||..+| ..+|-|.++.+-.-+. -..+.+.++.|.+.++|..++..+.
T Consensus 11 ~nL~~~~te~~L~~~F----~~~G~i~~~~i~~d~~tg~~kg~afv~f~~~~~a~~ai~~ln 68 (85)
T 1x4e_A 11 RGLQPGTTDQDLVKLC----QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp ESCCTTCCHHHHHTTS----TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHH----HHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 1899988999999999----985980278662137999718879999898999999999848
No 58
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=69.07 E-value=3.1 Score=19.47 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 13322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 187 LIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 187 ~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
.+.+.+--||..+| ..+|-|+.+.++-..-.....++++.|.+.++|.+++.
T Consensus 117 lp~~~t~~~l~~~F----~~~G~V~~v~l~~~~~~~~kG~afVeF~~~e~A~~a~~ 168 (193)
T 2voo_A 117 FPTDATLDDIKEWL----EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 168 (193)
T ss_dssp CCTTCCHHHHHHHH----TTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHH----HCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 99989999999996----45897599996458988988779999799999999998
No 59
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=69.03 E-value=3.3 Score=19.30 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 1289999999999886348
Q gi|254780761|r 357 GQIPSFLQEVKKSVSSIFP 375 (473)
Q Consensus 357 ~~l~~~~~~v~~~l~~~~~ 375 (473)
+..-+|++.+-..+.+.|+
T Consensus 480 ~~t~~Fl~~Vi~Ev~~lF~ 498 (858)
T 1c7s_A 480 DSSQRFVDKVIGEIAQMHK 498 (858)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 4778899999999998600
No 60
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.80 E-value=2.8 Score=19.69 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=39.3
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
.+|.+.+--||..+| ..+|-|..+.+.-.+--..+.++++.|.+.++|..++.
T Consensus 18 nlp~~~t~~~l~~~F----~~~G~v~~v~i~~~~~g~~kG~afV~F~~~e~a~~al~ 70 (103)
T 1s79_A 18 GFPTDATLDDIKEWL----EDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp CCCTTCCHHHHHHHH----HTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HHHCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 989989999999999----98610433200136644568879999899999999997
No 61
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=68.29 E-value=3.4 Score=19.20 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=40.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+..||..+| ..+|-|+++.+-..+. ...+.++|+.|.+.++|..++..+.
T Consensus 21 ~nLp~~~te~~L~~~F----~~~G~v~~~~~~~~~~tg~~rG~afV~f~~~~~a~~Ai~~~~ 78 (115)
T 2dgo_A 21 GDLSPEITTEDIKAAF----APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp ESCCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 7999988999999998----604954478760127888747618999899999999999849
No 62
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.15 E-value=3 Score=19.55 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=39.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+--||..+| ..+|-|+++.+..-+ ...+.+.++.|.+.++|..++..+.
T Consensus 35 ~nLp~~~te~~l~~~f----~~~G~I~~v~i~~~~-~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 35 SNIPFRFRDPDLRQMF----GQFGKILDVEIIFNE-RGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp ESCCTTCCHHHHHHHG----GGTCCCSCEEECCBT-TBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCC-CCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 7989869999999999----864998999773025-4667759999899999999999819
No 63
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=67.98 E-value=3.4 Score=19.19 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=40.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012-799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITG-AVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITe-vtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.+|.+.+--||.++| ..+|.+.. +.+...+....+..+++.|.+.++|.++++.+.
T Consensus 21 ~nLp~~~t~~dl~~~F----~~~g~~~~~v~~~~~~~g~~~G~afV~f~~~e~a~~A~~~l~ 78 (95)
T 2ek1_A 21 QNMPFTVSIDEILDFF----YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp ECCCTTCCHHHHHHHT----TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HCCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 7989989799999998----525977079999879999954279999899999999999728
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.98 E-value=2.6 Score=19.92 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=37.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+.-||..+| ..+|=|+++.+. +.+.++.|.+.++|.+|++.+.
T Consensus 14 ~nlp~~~t~~~l~~~F----~~~G~i~~v~i~-------rg~afV~f~~~~~A~~Ai~~l~ 63 (90)
T 2dnq_A 14 GNLPREATEQEIRSLF----EQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp ESCCSSCCHHHHHHHH----HTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEC-------CCCEEEEECCHHHHHHHHHHCC
T ss_conf 5899869999999999----871986699863-------4519999899999999999809
No 65
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.86 E-value=4.8 Score=18.27 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=40.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..++.+.+--||..+| ..+|=|.++.+-..+. -..+.++++.|.+.++|..++..+.
T Consensus 21 ~nLp~~~~~~~l~~~F----~~~G~v~~~~i~~d~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 78 (103)
T 2cq0_A 21 TNLSEDTRETDLQELF----RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp ESCCTTCCHHHHHTTS----TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 6999979899999999----744987999865125754677548999899999999999819
No 66
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=67.84 E-value=5.3 Score=17.98 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=43.3
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 530211220133223222333223465454310127994046754432100001352689999975
Q gi|254780761|r 178 GDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 178 G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
+.++.. +.+|.+.+--||..+|- ..|..+.++.+.|..-+.-..+..+++.|.+.++|-.|+..
T Consensus 44 ~~~v~V-~nLp~~~t~~dl~~~F~-~~~~~~~~~~v~~~~~~~g~~~G~afVeF~~~e~a~~Al~~ 107 (136)
T 2hgl_A 44 GFVVKL-RGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKK 107 (136)
T ss_dssp TCEEEE-ESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTT
T ss_pred CEEEEE-ECCCCCCCHHHHHHHHH-CCCCCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
T ss_conf 169999-59897599999999974-24567855899988789998715699997899999999972
No 67
>1hd0_A Protein (heterogeneous nuclear ribonucleoprotein D0); RNA-binding domain, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1hd1_A
Probab=67.81 E-value=2.3 Score=20.26 Aligned_cols=53 Identities=19% Similarity=0.390 Sum_probs=39.7
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 01332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
..|.+.+--||..+| ..+|-|.++.+...+. .+.+.+.++.|.+.+++..++.
T Consensus 6 nLp~~~te~~l~~~F----~~~G~i~~v~i~~d~~t~~~kg~afV~f~~~~~a~~al~ 59 (75)
T 1hd0_A 6 GLSWDTTKKDLKDYF----SKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 59 (75)
T ss_dssp CCCTTCCHHHHHHHH----HTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 899969899999999----854987786886237999707479999887999999984
No 68
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.68 E-value=3 Score=19.52 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=39.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.++.+.+--||..+| ..+|-|+.+.|...+. ...+.+.|+.|.+.++|..++.
T Consensus 33 ~nL~~~~te~~L~~~F----~~~G~i~~v~i~~d~~t~~~kG~afV~f~~~~~a~~al~ 87 (116)
T 1x4b_A 33 GGLSFETTEESLRNYY----EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 87 (116)
T ss_dssp ECCTTCCCHHHHHHHH----TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 0899868899999999----860977888850258999726289999887999999997
No 69
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.62 E-value=5.4 Score=17.96 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=39.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012-799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITG-AVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITe-vtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.+|.+.+--||..+| ..+|++.. +.+..-+--..+.++++.|.+.++|..+++
T Consensus 21 ~nLp~~~t~~di~~~F----~~~g~~~~~v~~~~~~~g~~~G~afV~F~~~e~a~~Al~ 75 (114)
T 2cpy_A 21 TNIPFSITKMDVLQFL----EGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp ESCCTTSCHHHHHHHT----TTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
T ss_conf 6999989899999998----871983078999889999870389999899999999985
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.62 E-value=3.4 Score=19.24 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=40.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++++.+.+--||..+| ..+|-|+.+.+. .....+.+.++.|++.++|..++..+.
T Consensus 28 ~nLp~~~te~~L~~~F----~~~g~v~~~~~~--~~~~~~g~afV~f~~~~~a~~Ai~~l~ 82 (109)
T 1x4a_A 28 GNLPPDIRTKDIEDVF----YKYGAIRDIDLK--NRRGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp ESCCTTCCHHHHHHHH----GGGSCEEEEEEC--CSSSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCEEEEE--EECCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 7989879899999998----411787301332--211689749988699999999999839
No 71
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=67.33 E-value=4.1 Score=18.68 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEE--EECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 989999999733844186698998773134013676687589--95499899999999998729829997
Q gi|254780761|r 5 SLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLV--LLPSCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 5 ~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~V--v~P~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
+.+-++++...+..-.+.. +.-|.+|... +...|..- --|=|.+|+.+|+++|.+++|-|+|-
T Consensus 100 t~~~lk~~id~ma~~K~N~----lhlhl~D~~~-~~~~p~l~~~~~~yT~~ei~eiv~yA~~rgI~vIPe 164 (627)
T 2epl_X 100 NLSSAKKMIEVLALMGYST----FELYMEDTYE-IENQPYFGYFRGRYTVAELQEIEDYAADFDMSFVPC 164 (627)
T ss_dssp CHHHHHHHHHHHHHHTCCE----EEEECSSCBC-CTTCTTTTTTTTCBCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCE----EEEEEEECCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999999839937----9999985646-788550246789979999999999999869989963
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A
Probab=67.17 E-value=3.7 Score=18.98 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=41.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675-443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--+|..+| +.+|-|+++.|-.-+.. +.+.++|+.|.+.++|..|+..+.
T Consensus 78 ~nLp~~~te~~L~~~F----~~~G~i~~v~i~~d~~tg~skg~afV~F~~~e~A~~Ai~~l~ 135 (165)
T 1rk8_A 78 TSIHEEAQEDEIQEKF----CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 135 (165)
T ss_dssp ESCCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHHCCCEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 1899858899999999----986995288665200111234303689799999999999818
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.15 E-value=2.5 Score=19.99 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=39.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC--CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467--544321000013526899999751
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY--RTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~--p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+..+.+.+--||..+| +.+|-|+++.|-.-+. -..+.+.|+.|.+.++|..+++.+
T Consensus 21 ~nLp~~~t~~~L~~~F----~~~G~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 78 (107)
T 2cph_A 21 RNIPFQANQREIRELF----STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 3899989999999999----875997389997504457875667999989899999999970
No 74
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=67.06 E-value=2.3 Score=20.32 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=41.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+.-||..+| ..+|-|+++.+-.-+. ...+.++|+.|.+.++|..++..+.
T Consensus 48 ~nLp~~~te~~L~~~F----~~~G~V~~v~i~~d~~tg~~kG~aFV~F~~~~~A~~Ai~~l~ 105 (139)
T 1u6f_A 48 NYIPTTVDEVQLRQLF----ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp ESCSTTCCHHHHHHHH----HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 6999869899999999----853986886651048999736417887499999999999829
No 75
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Probab=67.05 E-value=3.8 Score=18.89 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 9999999887153777
Q gi|254780761|r 451 IKIMKKIKEIFDPAGI 466 (473)
Q Consensus 451 ~~~l~~iK~~~DP~gi 466 (473)
..-|...+..++-.||
T Consensus 502 ~~Rl~~~~~rl~~~Gi 517 (525)
T 3gh5_A 502 KERLIEHTPRLQNKGI 517 (525)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999997799
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.87 E-value=4.2 Score=18.62 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=40.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+.-+|..+| ..+|=|.++.+..-+. .+.+.+.++.|.+.++|..+++.+.
T Consensus 22 ~nl~~~~te~~l~~~F----~~~G~i~~v~i~~d~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 22 SNLPFSLTNNDLYRIF----SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp ESCCTTSCHHHHHHHT----TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 4999869899999999----851987898650465666668669999898999999999839
No 77
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.54 E-value=2.4 Score=20.17 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=36.3
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.++.+.+.-||.++| ..+|-|+++.+. +.+.++.|.+.++|.+++..+.
T Consensus 17 nl~~~~~e~~L~~~F----~~~G~i~~~~i~-------k~~afV~f~~~~~A~~Ai~~l~ 65 (92)
T 2dgt_A 17 NISPTCTNQELRAKF----EEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp SCCSSCCHHHHHHHH----HTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HHHCCCCEEEEC-------CCEEEEEECCHHHHHHHHHHCC
T ss_conf 899989999999999----985997277464-------6378999899999999999819
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.36 E-value=3.3 Score=19.26 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=38.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.+|.+.+--||..+|- .+|++ ++.+..-+.-..+..+++.|.+.++|.++++
T Consensus 16 ~gLP~~~te~di~~~F~----~~g~~-~v~i~~~~~g~~~G~afV~F~~~e~a~~Al~ 68 (91)
T 2dgw_A 16 RGAPFNVTEKNVMEFLA----PLKPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp ECCCSSCCHHHHHHHHT----TSCCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH----CCCEE-EEEEEECCCCCEEEEEEEEECCHHHHHHHHH
T ss_conf 39799899999998741----66869-9999988999894289999899999999983
No 79
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=66.07 E-value=4.2 Score=18.60 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=40.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675-443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|+.+.|..-+.. ..+.++|+.|.+.++|..|+..+.
T Consensus 45 gnLp~~~te~~L~~~F----~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~A~~Ai~~l~ 102 (156)
T 1h2v_Z 45 GNLSFYTTEEQIYELF----SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp ESCCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 1999979899999999----965986899886137888847856999899999999999858
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.06 E-value=3.4 Score=19.21 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=38.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.+|.+.+--||..+| ..+|-|+.+.++- ..+.++.|.+.++|..|+..+.
T Consensus 21 ~nlp~~~t~~~L~~~F----~~~G~v~~~~~~~------~g~afV~f~~~~~A~~Ai~~ln 71 (108)
T 1x4c_A 21 SGLPPSGSWQDLKDHM----REAGDVCYADVYR------DGTGVVEFVRKEDMTYAVRKLD 71 (108)
T ss_dssp ESCCSSCCHHHHHHHH----GGGSCEEEEEEET------TTEEEEEESSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHH----HHCCCCEEEEECC------CCEEEEEECCHHHHHHHHHHHC
T ss_conf 7799986099999998----4359942888736------9839999799999999999978
No 81
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=65.77 E-value=4.6 Score=18.40 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=38.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++.+.+.+.-+|..+| ..+|-|.++.+ .| .+...++.|.+.++|..|+..+.
T Consensus 13 ~NL~~~vt~~~L~~lf----~~~G~i~~~~~--~~---~~g~afV~f~~~~~A~~A~~~ln 64 (89)
T 2wbr_A 13 KNLTAQIDGPTLRTLC----MQHGPLVSFHP--YL---NQGIALCKYTTREEANKAQMALN 64 (89)
T ss_dssp ECCCTTCCCHHHHHHH----HHHSCEEEEEE--ET---TTTEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCCCCC--CC---CCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7999989999999999----98599564422--89---99789999899999999999868
No 82
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, hydrolase; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 1o7a_A* 2gk1_B*
Probab=65.66 E-value=4.6 Score=18.35 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=5.5
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999887153777
Q gi|254780761|r 454 MKKIKEIFDPAGI 466 (473)
Q Consensus 454 l~~iK~~~DP~gi 466 (473)
|...+..++-.||
T Consensus 480 l~~~~~~l~~~Gi 492 (507)
T 1now_A 480 LTRHRCRMVERGI 492 (507)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999996799
No 83
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.63 E-value=4.7 Score=18.31 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=40.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..++.+.+--||..+| ..+|-|+.+.+..-+. ..+.+.|+.|.+.++|..++..+.
T Consensus 21 ~nLp~~~t~~~l~~~f----~~~G~v~~v~~~~~~~-~~rg~afV~f~~~~~a~~Ai~~ln 76 (103)
T 2cq3_A 21 SNIPFRFRDPDLRQMF----GQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp ESCCTTCCHHHHHHHG----GGTSCEEEEEEECCTT-TTCCEEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCCC-CCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 8999989999999999----8759578988512478-988616898799999999999819
No 84
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural genomics, PSI-2, protein structure initiative; HET: MLY MSE; 1.80A {Haemophilus ducreyi 35000HP} SCOP: d.145.1.4
Probab=65.56 E-value=3.4 Score=19.21 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 123734551144200222210012322234433432111311222123
Q gi|254780761|r 105 DLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 105 d~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
-.++++-.|.+-+.+.++++++.-. + .+....+.|||||+-..
T Consensus 5 r~~dg~~~v~G~~~l~dl~~~l~~~---~--~~~~~~~~TlgG~i~~~ 47 (86)
T 2p4p_A 5 RRNEDSWLIDGATPLEDVMRALNIH---T--FPRDENYETIGGFMMYM 47 (86)
T ss_dssp CCCCSEEEEETTSBHHHHHHHTTCC---C--SCCSCSSCBHHHHHHHH
T ss_pred EECCCEEEEEECCCHHHHHHHHCCC---C--CCCCCCCCCHHHHHHHH
T ss_conf 9659969999037999999986999---8--88755620599999998
No 85
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=65.15 E-value=2.4 Score=20.12 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=37.7
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..+.+.+--||.++| +.+|-|+++.+.- .+ +...++.|.+.++|..|+..+.
T Consensus 7 nL~~~~te~~L~~~F----~~~G~i~~v~i~~--~~--~g~afV~f~~~~~A~~Ai~~l~ 58 (101)
T 2hvz_A 7 NLGTGAGKGELERAF----SYYGPLRTVWIAR--NP--PGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CCCSSCSHHHHHHHH----HHHCCCSEEEEES--SS--SSEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEE--CC--CCEEEEEECCHHHHHHHHHHHC
T ss_conf 999879899999997----3129878999942--23--7778999899999999999868
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=64.42 E-value=3.3 Score=19.28 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=39.1
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.++.+.+--||..+| ..+|-|+.+.+... .-+.+.+.++.|.+.++|..++..+.
T Consensus 15 nLp~~~t~~~l~~~F----~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~A~~Ai~~ln 69 (92)
T 2dgv_A 15 NLPFDFTWKMLKDKF----NECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp SCCTTCCHHHHHHHH----HTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HHHCCCEEEEEECC-CCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 999869999999999----97399649999733-89746538999899999999999849
No 87
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.34 E-value=3 Score=19.51 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=40.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|.++.|-..+. -+.+.+.++.|.+.++|..++..+.
T Consensus 18 ~nlp~~~te~~l~~~F----~~~G~v~~v~i~~d~~~~~~rG~afV~f~~~~~a~~ai~~l~ 75 (102)
T 2cqb_A 18 GGLAEEVDDKVLHAAF----IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp ESCCSSCCHHHHHHHH----TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHHCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 3999868899999999----974977652001357788747638999899999999999859
No 88
>3b4d_A Polyadenylate-binding protein 2; RRM fold, alpha-beta sandwich structure, RNA binding domain, RNA recognition motif, acetylation; 2.00A {Homo sapiens} PDB: 3b4m_A
Probab=64.29 E-value=3.8 Score=18.87 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=39.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
++++.+.+--||..+| ..+|-|.++.+..-+. ...+.++++.|.+-+++.+++.
T Consensus 11 ~nLp~~~t~~~L~~~F----~~~G~I~~v~i~~~~~~g~~kG~afV~F~~~e~a~~Al~ 65 (96)
T 3b4d_A 11 GNVDYGATAEELEAHF----HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 65 (96)
T ss_dssp ESCCTTCCHHHHHHHH----GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 6989989999999998----516833587640247889856579999878999999984
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=63.78 E-value=4.5 Score=18.43 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=40.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+-.+|..+| ..+|-|.++.+...+. ...+.++|+.|.+.++|..++..+.
T Consensus 32 ~nLp~~~~~~~L~~~F----~~~G~i~~v~~~~d~~tg~~~G~afV~f~~~~~A~~Ai~~l~ 89 (108)
T 2jrs_A 32 GSLHFNITEDMLRGIF----EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 89 (108)
T ss_dssp ECCCSSCCHHHHHHHH----TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCCEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 7959979899999999----870963220002556668767608999899999999999709
No 90
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=63.70 E-value=4.7 Score=18.32 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=39.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+--||..+| ..+|-|.++.+-..+. ...+.+.++.|.+.++|..+++.+.
T Consensus 12 ~nL~~~~te~~l~~~F----~~~G~i~~~~v~~d~~tg~~kg~afV~f~~~~~a~~ai~~ln 69 (87)
T 3bs9_A 12 GDLSPEITTAAIAAAF----APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp ESCCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 6999869799999999----870987899998606779617479999999999999999839
No 91
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} PDB: 2o1r_A*
Probab=63.50 E-value=3.1 Score=19.41 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 237345511442002222100123222344334321113112221235
Q gi|254780761|r 106 LRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 106 ~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
..+++..|.+.+.+.+|++++ ++-+| ...+.|||||+-...
T Consensus 6 ~~dg~~~v~G~~~l~dl~~~~---~~~l~----~~~~~TigG~v~~~l 46 (81)
T 3lae_A 6 QSDGSMIIDGSANLRDLNKMF---NWELD----TEDARTFNGLILEHL 46 (81)
T ss_dssp CTTSCEEEETTCBHHHHHHHH---CCCCC----CSSCSBHHHHHHHHC
T ss_pred ECCCEEEEEECCCHHHHHHHH---CCCCC----CCCCHHHHHHHHHHH
T ss_conf 079979998017999999986---97999----887700999999985
No 92
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.20 E-value=4.1 Score=18.69 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=37.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--+|..+| ..+|-|.++.+. +.+...++.|.+.++|..++..+.
T Consensus 21 ~nlp~~~t~~~L~~~F----~~~G~v~~v~~~-----~~kg~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpj_A 21 GNLPPDITEEEMRKLF----EKYGKAGEVFIH-----KDKGFGFIRLETRTLAEIAKVELD 72 (99)
T ss_dssp ESCCTTCCHHHHHHHT----STTCCCSEEEEE-----TTTTEEEEECSSSHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEE-----CCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 5989869899999999----841978899884-----589869999889999999999819
No 93
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A*
Probab=62.84 E-value=3.4 Score=19.23 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=40.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..|.+.+--+|..+| ..+|-|.++.+-.-+. ...+.+.++.|.+.++|..+++.+.
T Consensus 13 ~nLp~~~t~~~l~~~F----~~~g~v~~v~v~~~~~t~~~~gfafV~f~~~~~A~~ai~~l~ 70 (85)
T 3mdf_A 13 GGLAEEVDDKVLHAAF----IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp ECCCTTCCHHHHHHHH----GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 0899869799999999----862998998764307889666179999898999999999839
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.77 E-value=4.1 Score=18.69 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=40.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 20133223222333223465454310127994046754----43210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRT----GKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~----~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+-.||..+| ..+|-|.++.|-..+... .+.+.++.|.+.++|..++..+.
T Consensus 11 ~nLp~~~~e~~l~~~F----~~~G~v~~v~i~~~~~~~~~~~skG~afV~f~~~~~A~~Ai~~l~ 71 (98)
T 2cpf_A 11 KNLNFSTTEETLKGVF----SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 3999989999999999----982965020010000233667767448999799999999999819
No 95
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.53 E-value=3.2 Score=19.36 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=42.8
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 6530211220133223222333223465454310127994046754-43210000135268999997510
Q gi|254780761|r 177 TGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRT-GKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 177 ~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++.|+= +.++.+.+-.||..+| ..+|-|.++.+...+... .+.++++.|.+.++|..++..+.
T Consensus 12 ~~~lfV--~nLp~~~te~~l~~~F----~~~g~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~ 75 (102)
T 1x5s_A 12 EGKLFV--GGLSFDTNEQSLEQVF----SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CSEEEE--ESCCTTCCHHHHHHHH----HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCEEEE--ECCCCCCCHHHHHHHH----HHCCCCCEECEECCCCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 999999--7999868799999987----444855200000001268645767999899999999999849
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.15 E-value=4.2 Score=18.63 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=37.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+.-||..+| -.+|-|+++.+ .+ .+..+++.|.+.++|..+++.+.
T Consensus 21 ~nLp~~~te~dL~~lF----~~fG~I~~i~~--~~---~k~~afV~f~~~~~A~~a~~~~~ 72 (104)
T 1wex_A 21 RGLCESVVEADLVEAL----EKFGTICYVMM--MP---FKRQALVEFENIDSAKECVTFAA 72 (104)
T ss_dssp ESCCSSCCHHHHHHHH----TTTSCEEEEEE--ET---TTTEEEEEESSHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCEEEE--EC---CCCEEEEEECCHHHHHHHHHHHC
T ss_conf 6999999999999999----98699737998--64---78769999799999999999870
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.00 E-value=5 Score=18.15 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=38.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 01332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
.++.+.+--||..+| ..+|-|+++.+-.-+. -..+.+.++.|.+.++|..++.
T Consensus 17 nLp~~~te~~L~~~F----~~~G~i~~v~i~~d~~t~~~~g~afV~f~~~~~a~~al~ 70 (99)
T 2dgs_A 17 GIPHNCGETELREYF----KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SCCSSCCHHHHHHHH----SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 999979999999999----873964067994034665568769999888999999984
No 98
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=61.42 E-value=2.6 Score=19.92 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=40.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-+|..+| ..+|-|.++.+-.-+. ...+.+.|+.|.+.++|..|+..+.
T Consensus 19 ~nLp~~~~e~~l~~~F----~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 19 GQIPRNLDEKDLKPLF----EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp ESCCTTCCHHHHHHHH----HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEECCCCCCCEECCEEEEEECCHHHHHHHHHHHC
T ss_conf 7999979999999999----876987997431445568141269999898999999999976
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.17 E-value=5.3 Score=17.99 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=37.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.+|.+.+.-||..+| ..+|-|+.+.+ .+ .+..+++.|++.++|..++..+.
T Consensus 21 ~nLp~~~te~~L~~~f----~~~G~v~~~~~--~~---~~g~afV~f~~~~~A~~A~~~l~ 72 (101)
T 2cq1_A 21 RKLPGEVTETEVIALG----LPFGKVTNILM--LK---GKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp ESCCTTCCHHHHHHTT----TTTSCEEEEEE--ET---TTTEEEEEESSHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCEEEEE--EC---CCCEEEEEECCHHHHHHHHHHHC
T ss_conf 4999999999999998----75497525687--52---69889999899999999999975
No 100
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=60.91 E-value=4.3 Score=18.59 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=39.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+-.||.++| ..+|-|+++.+..-+. -+.+.+.++.|.+.++|..+++.+.
T Consensus 69 gNLp~~vte~~L~~~F----~~~G~V~~v~i~~d~~tg~skGfaFV~F~~~e~A~~Ai~~ln 126 (140)
T 2ku7_A 69 GGLAEEVDDKVLHAAF----IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp ECCCTTCCHHHHHHHH----GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 2989838699999999----724988999988655788866768999899999999999869
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.34 E-value=4.2 Score=18.61 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=40.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-||..+| ..+|-|+++.|...+. -..+.+.|+.|.+.++|..+++.+.
T Consensus 21 ~nLp~~~te~~l~~~F----~~~G~I~~v~i~~d~~t~~~kG~afV~F~~~e~a~~Ai~~~~ 78 (111)
T 1x4h_A 21 RNLSFDSEEEALGEVL----QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHH----HHHCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 8999978899999999----985981322223577875667679999667999999998644
No 102
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=60.34 E-value=4.6 Score=18.38 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=39.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675-443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-||..+| +.+|-|.++.+..-+.. ..+.++++.|.+.++|..++..+.
T Consensus 32 ~nlp~~~~e~~l~~~f----~~~G~i~~v~i~~d~~~g~~kg~afV~f~~~e~A~~Ai~~l~ 89 (110)
T 1oo0_B 32 TSIHEEAQEDEIQEKF----CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp ESCCTTCCHHHHHHHH----GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHC
T ss_conf 1799989999999999----735987999998605788611578999899999999999809
No 103
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=60.30 E-value=3.7 Score=18.98 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=40.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+-.||..+| +.+|-|+.+.+. +.+ +.+.++.|.+.++|..|+..+.
T Consensus 79 ~nL~~~vte~~L~~~F----~~~G~i~~v~v~--~~~--~g~afV~F~~~~~A~~Ai~~ln 131 (150)
T 2i2y_A 79 GNLGNNGNKTELERAF----GYYGPLRSVWVA--RNP--PGFAFVEFEDPRDAADAVRELD 131 (150)
T ss_dssp ESCCSCCSCHHHHHHH----HHHSCEEEEEEC--SSS--CSEEEEEESSHHHHHHHHHHHS
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEE--ECC--CCEEEEEECCHHHHHHHHHHCC
T ss_conf 7989869899999998----605987999998--458--8807999899999999999839
No 104
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.26 E-value=5.3 Score=17.98 Aligned_cols=54 Identities=13% Similarity=0.272 Sum_probs=39.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
++.|.+.+.-||..+| ..+|.|..+.+...+. ...+...++.|.+.++|..++.
T Consensus 6 ~nLp~~~te~~l~~~F----~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Al~ 60 (77)
T 1uaw_A 6 GGLSWQTTQEGLREYF----GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60 (77)
T ss_dssp ESCCSSCCSHHHHHHH----TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHCCEEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 6799868899999997----327806565420247888738879999999999999997
No 105
>3ded_A Probable hemolysin; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=60.06 E-value=4.5 Score=18.47 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=32.5
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHCC
Q ss_conf 74211237345511442002222100123222344-33432111311222123
Q gi|254780761|r 101 IRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPL-SLPSEKYCHIGGNLATN 152 (473)
Q Consensus 101 il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~-~p~s~~~aTvGG~ia~~ 152 (473)
|..+ .+.+..|.+-+.+.++++.+.- -+|. +..+..+.||||||-..
T Consensus 29 I~~~--~dg~~~vdG~~~l~dl~~~l~~---~lp~~~~e~~d~dTlgGlvl~~ 76 (113)
T 3ded_A 29 IVQR--EDGSWLVDGMVSLDRFREFFEL---EAPLPGEAGGNIHTLAGVMLYQ 76 (113)
T ss_dssp EEEC--TTSCEEEETTCBHHHHHHHTTC---CSCCTTGGGTCCCBHHHHHHHH
T ss_pred EEEE--CCCEEEEEEECCHHHHHHHHCC---CCCCCCCCCCCCCCHHHHHHHH
T ss_conf 2993--7998999844799999998799---8887754357723199999998
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.47 E-value=5 Score=18.15 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=38.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-||..+| ..+|-|..+.+ . +.+...++.|.+.++|..++..+.
T Consensus 23 ~nLp~~~~e~~L~~~f----~~~G~i~~i~~--~---~~~~~afV~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 23 GGLGPNTSLAALAREF----DRFGSIRTIDH--V---KGDSFAYIQYESLDAAQAACAKMR 74 (97)
T ss_dssp ECCCSSCCHHHHHHHH----HTTSCEEEEEE--C---SSSCCEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCCEEEE--E---EECCEEEEEECCHHHHHHHHHHHC
T ss_conf 5999989899999998----63388732688--7---208877999899999999999878
No 107
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=59.43 E-value=7.6 Score=17.01 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=43.5
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 021122013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 180 IWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 180 i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
.+.. +.+|-+.+--||..+|-+ .|..+.+..+.|-.-+--..+..+++.|.+-++|.+++.
T Consensus 19 ~v~v-~nLP~~~te~dI~~~F~~-~~~~~~~~~v~~~~~~~g~~~G~afV~F~~~e~a~~al~ 79 (118)
T 2db1_A 19 VVKL-RGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EEEE-ESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred EEEE-ECCCCCCCHHHHHHHHHH-CCCCCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 9999-298985979999999874-455785699998878999752569999899999999997
No 108
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, acetylation, cytoplasm nucleus, RNA-binding; 1.60A {Saccharomyces cerevisiae}
Probab=59.12 E-value=6.5 Score=17.45 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=39.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+--||..+| ..+|-|+++.+-.-+. -..+..+++.|.+.++|..++..+.
T Consensus 7 ~nL~~~~te~~L~~~F----~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~ 64 (83)
T 3md1_A 7 GDLNVNVDDETLRNAF----KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp ECCCTTCCHHHHHHHH----TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 4979858899999999----756958999997505568503079999998999999999809
No 109
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.11 E-value=5.8 Score=17.73 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=39.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
..++.+.+--||..+| ..+|-|..+.|..-+. ...+.+.|+.|.+.++|..++.
T Consensus 31 ~nLp~~~te~~l~~~F----~~~G~i~~v~i~~d~~~g~~kG~afV~f~~~e~a~~Al~ 85 (114)
T 2cq4_A 31 MQLAARIRPRDLEDFF----SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 7999979899999999----715986996651136789752238999899999999984
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=58.99 E-value=4.5 Score=18.47 Aligned_cols=54 Identities=13% Similarity=0.240 Sum_probs=35.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-54432100001352689999975
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
+.++.+.+--||..+| ..+|-|+++.+-..+. ...+.++++.|.+ +++.+++..
T Consensus 7 ~nLp~~~te~~L~~~F----~~~G~i~~v~i~~d~~~g~~kG~afV~f~~-~~a~~a~~~ 61 (90)
T 2ki2_A 7 GNLVYSATSEQVKELF----SQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAIAK 61 (90)
T ss_dssp EEECTTSSHHHHTTTH----HHHTCCSEEEECCCSSSCCCCEEEEEEECT-THHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEECCCCCCCCCCCEEEEEECC-HHHHHHHHH
T ss_conf 8999978899999998----743842144201244666646179999898-999999998
No 111
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.81 E-value=4.4 Score=18.47 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=39.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+++.+.+--||.++| ..+|-|.++.+...+. ...+.++++.|.+.++|..|+..+.
T Consensus 19 ~nLp~~~te~~l~~~F----~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~e~a~~Ai~~l~ 76 (103)
T 2dnm_A 19 DNLTYRTSPDSLRRVF----EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 3989999999999999----745987999763125568756528999899999999999839
No 112
>2f9d_A PRE-mRNA branch site protein P14; P14 SF3BP14 SF3B155 SAP155 RRM, RNA binding protein; 2.50A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9j_A 2fho_B
Probab=58.23 E-value=5.2 Score=18.04 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=39.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.+|.+.+--+|..+| ..+|-|..+.+. .-+..+.++++.|.+.++|..|+..+.
T Consensus 24 ~nLp~~~t~~~l~~~F----~~~G~I~~i~~~--~~~~~kg~afV~F~~~~~A~~Ai~~ln 78 (125)
T 2f9d_A 24 RNLPYKITAEEMYDIF----GKYGPIRQIRVG--NTPETRGTAYVVYEDIFDAKNACDHLS 78 (125)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSCEEEEEEE--CSTTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCEEEEEE--ECCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 3999989999999999----980997399972--113327748999899999999999838
No 113
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.22 E-value=4.9 Score=18.18 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=38.2
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 0133223222333223465454310127994046754432100001352689999975102
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQK 246 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 246 (473)
..+...+.-+|..+| .-+|-|.++.+ .+. .+...++.|.+.++|..|++.+..
T Consensus 32 Nl~~~vt~~~L~~lF----~~fG~I~~i~i--~~~--~~~~afV~f~~~~~A~~A~~~Lng 84 (124)
T 2e5i_A 32 NPLYPITVDVLYTVC----NPVGKVQRIVI--FKR--NGIQAMVEFESVLCAQKAKAALNG 84 (124)
T ss_dssp SCCSCCCHHHHHHHH----TTTSCEEEEEE--EES--SSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHH----HHCCCCEEEEE--EEC--CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 989978999999999----87099449999--957--997799997988999999999779
No 114
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.89 E-value=5.3 Score=17.98 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=35.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 20133223222333223465454310127994046-75443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP-YRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p-~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
++++.+.+--||..+|- .+|++ .+.+...+ ....+.++|+.|.+.++|..++.
T Consensus 21 ~nLp~~~te~~l~~~F~----~~~~~-~~~~~~~~~~~~~~g~aFV~f~~~e~a~~Ai~ 74 (103)
T 2dng_A 21 GNLPFNTVQGDIDAIFK----DLSIR-SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp ESCCTTCCHHHHHHHTT----TSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHGG
T ss_pred ECCCCCCCHHHHHHHHH----HCCEE-EEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 39898598999999986----07838-99998765778758707999899999999996
No 115
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=57.54 E-value=6.4 Score=17.47 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=40.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 20133223222333223465454310127994046-75443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP-YRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p-~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
..+|.+.+--||..+| +.+|++..+.+.+.. ....+...++.|.+.++|..++.
T Consensus 48 ~nLP~~~te~di~~~F----~~~g~v~~~i~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 102 (126)
T 2hgm_A 48 RGLPFGCTKEEIVQFF----SGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 102 (126)
T ss_dssp ECCCTTCCHHHHHHHT----TTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 3569989899999998----555993289998878999783459999799999999997
No 116
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=57.40 E-value=4.7 Score=18.32 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=29.5
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 3734551144200222210012322234433432111311222123
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
.+.+..|.+.+.+.++++.+. +-+| +..+.|||||+-..
T Consensus 6 ~~~~~~v~G~~~l~dl~~~~~---~~l~----~~~~dTl~G~i~~~ 44 (87)
T 2rk5_A 6 ADNTYIVLGTMTLNDFNEYFE---TDLE----SDNVDTIAGFYLTG 44 (87)
T ss_dssp ETTEEEEETTSBHHHHHHHHT---CCCC----CTTCCBHHHHHHHH
T ss_pred CCCEEEEEEECCHHHHHHHHC---CCCC----CCCCEEHHHHHHHH
T ss_conf 699999995369999999879---7999----87750299999998
No 117
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.19 E-value=7.6 Score=17.02 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=34.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+|- |.+.-..++-..-...+.+.|+.|.+.++|.+++..+.
T Consensus 21 ~nLp~~~te~~L~~~F~------~~~~~~~i~~~~~g~~rG~aFV~f~~~~~A~~Ai~~l~ 75 (102)
T 2fc8_A 21 KGLSEDTTEETLKESFD------GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 75 (102)
T ss_dssp ECCCTTCCHHHHHHTST------TCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHC------CCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 99998688999998708------91599998738999806429999899999999999849
No 118
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.17 E-value=3.2 Score=19.35 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=38.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCC-CEEEEEEEECCC--CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543-101279940467--5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLG-IITGAVLRLLPY--RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlG-iITevtlrl~p~--p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+| .|+++.|---+. ...+-++++.|.+-++|..+++.+.
T Consensus 14 ~nLp~~~te~~l~~~F----~~~G~~i~~v~l~~~~~~~~~~rG~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 14 GGIPKMKKREEILEEI----AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp ECCCTTSCHHHHHHHH----HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 7989868899999999----97295588899875104789853189999889999999999875
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.04 E-value=5.5 Score=17.88 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=39.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.++.+.+..||..+| ..+|-|+++.+-..+. ...+-+.++.|.+.+++..++.
T Consensus 22 ~nLp~~~te~~l~~~F----~~~G~v~~~~i~~d~~tg~~kG~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 22 GGLDWSTTQETLRSYF----SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp BSCCTTCCHHHHHHHH----HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 4999988599998677----607966687650358999847608999899999999997
No 120
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.94 E-value=4.5 Score=18.43 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=39.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+.|.+.+..||..+| ..+|-|.++.+ .+....+.++++.|.+.++|..++..+.
T Consensus 21 ~nLp~~~~~~~l~~lf----~~~G~i~~~~~--~~~~~~~~~afV~f~~~~~A~~Ai~~ln 75 (96)
T 2e44_A 21 RNIPPHLQWEVLDSLL----VQYGVVESCEQ--VNTDSETAVVNVTYSSKDQARQALDKLN 75 (96)
T ss_dssp EEECSSSCHHHHHHHH----HHHSCEEEEEE--ECCSSSSEEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEE--EECCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7989989999999999----75596799998--5314546468999776899999999868
No 121
>2aym_A U1 small nuclear ribonucleoprotein A; SNF RBD2, RNA binding, RNA splicing, solution structure, RNA binding protein; NMR {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2b0g_A 2u1a_A
Probab=56.87 E-value=6.7 Score=17.37 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=37.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+.-||..+| ..+|=|+++.+ .+. .+...++.|.+.++|..+++.+.
T Consensus 14 ~nlp~~~~e~~l~~~F----~~~G~i~~v~~--~~~--~~g~afV~f~~~~~A~~A~~~l~ 66 (83)
T 2aym_A 14 TNLPEETNEMMLSMLF----NQFPGFKEVRL--VPN--RHDIAFVEFTTELQSNAAKEALQ 66 (83)
T ss_dssp ESCCTTCCHHHHHHHH----TTSTTEEEEEE--CTT--TCSSEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----CCCCCEEEEEE--CCC--CCEEEEEEECCHHHHHHHHHHHC
T ss_conf 7999989899999973----24775788775--389--95489999899999999999977
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=56.83 E-value=6.5 Score=17.45 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=36.3
Q ss_pred ECC-CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013-322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLI-KDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~-~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..+ ++.+--+|.++| +.+|-|.++.++ +...++.|.+.++|.+|+..+.
T Consensus 17 nlp~~~~te~~l~~~F----~~~G~v~~v~i~-------~g~afV~f~~~e~A~~Ai~~l~ 66 (96)
T 2kvi_A 17 NLPLKNVSKEDLFRIF----SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECES 66 (96)
T ss_dssp SSTTSCCCHHHHHHHH----TTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCCCEEEEE-------CCEEEEEECCHHHHHHHHHHCC
T ss_conf 5996878999999999----870986248876-------8868999799999999999839
No 123
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=56.72 E-value=3.8 Score=18.91 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=40.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-||..+| ..+|-|..+.+...+. ...+.++++.|.+.++|..|+..+.
T Consensus 76 ~nL~~~~te~~L~~~F----~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~a~~A~~~l~ 133 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVF----EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 133 (158)
T ss_dssp ESCCTTCCHHHHHHHH----HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 1989988899999998----715988999997537778667639999899999999999849
No 124
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=55.88 E-value=5.4 Score=17.96 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 192 SRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 192 ~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.-+|..+| ..+|-|+.+.+. +.+...|+.|.+.++|..++..+.
T Consensus 50 te~~L~~~F----~~~G~I~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~ln 94 (121)
T 2bz2_A 50 TPTLLRGAF----SPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELN 94 (121)
T ss_dssp CHHHHHHHH----STTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CHHHHHHHH----HHCCCEEEEEEE-----CCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 999999999----714988775773-----569889999798999999999869
No 125
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=55.27 E-value=4.4 Score=18.52 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=36.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++++.+.+-.||..+| ..+|-|.++.+. +.+.|+.|.+.++|..|+..+.
T Consensus 17 ~nlp~~~te~~L~~~F----~~~G~v~~v~~~-------r~~afV~f~~~~~A~~Ai~~ln 66 (103)
T 2dgu_A 17 RNLANTVTEEILEKAF----SQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMN 66 (103)
T ss_dssp ECCCTTCCHHHHHHHH----HHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHHCCCCCCCEE-------EEEEEEEECCHHHHHHHHHHHC
T ss_conf 3999988999999999----986974322056-------4477889799999999999868
No 126
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=55.24 E-value=3.1 Score=19.46 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.+|.+.+--||..+| ..+|+ +.+.|..-+.-..+.++++.|.+.++|..++.
T Consensus 52 ~nLp~~~t~~dl~~~F----~~~gi-~~v~i~~~~~g~~~G~afV~F~~~e~a~~Al~ 104 (139)
T 2hgn_A 52 RGLPYKATENDIYNFF----SPLNP-VRVHIEIGPDGRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp CSCCTTCCHHHHHHHH----CSCCC-SEEECCCSSSSCSSCCCEEECSHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HCCCC-EEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 3999989899999987----26795-47887777998835159999799999999996
No 127
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.03 E-value=6 Score=17.63 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 22233322346545431012799404675443210000135268999997510
Q gi|254780761|r 193 RYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 193 G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.-+|..+| ..+|-|..+.+ ++.+.+.++.|.+.++|..|+..+.
T Consensus 27 e~~L~~~F----~~fG~I~~v~~-----~~~~g~afV~f~~~~~A~~Ai~~~n 70 (97)
T 1x5p_A 27 PTLLRGAF----SPFGNIIDLSM-----DPPRNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp HHHHHHHH----TTTSCEEEEEE-----ETTTTEEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHHH----HHCCCEEEEEE-----ECCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 99999999----72797788002-----2689979999897899999999849
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=54.63 E-value=6 Score=17.67 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=36.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.++.+.+--||..+| +.+|-|+.+.+. +.++++.|.+.++|..++..+.
T Consensus 38 nLp~~~t~~~l~~~F----~~~G~v~~v~i~-------rg~afV~f~~~~~A~~Ai~~l~ 86 (108)
T 2jvo_A 38 PFPLDVQESELNEIF----GPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVH 86 (108)
T ss_dssp SSCTTCCHHHHHHHH----TTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HHCCCCEEEEEE-------CCEEEEEECCHHHHHHHHHHHC
T ss_conf 999858999999999----873997797662-------1178998799999999999808
No 129
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=54.05 E-value=6.1 Score=17.62 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=37.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|+++.+-.-|. -+.+.++++.|.+.++|..|+..+.
T Consensus 8 ~nLp~~~te~~L~~~F----~~~G~i~~~~i~~~~~tg~~rg~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 8 GSIPYDQTEEQILDLC----SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 6999869999999999----973975788885124688766369999898999999999829
No 130
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=52.08 E-value=3.8 Score=18.87 Aligned_cols=51 Identities=24% Similarity=0.323 Sum_probs=35.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..|.+.+.-||.++| ..+|+. .+. + ...+.+.++.|.+.++|.++++.+.
T Consensus 11 ~nlp~~~t~~~l~~lF----~~~G~~-~~~--~---~~~kg~afV~f~~~~~A~~Ai~~l~ 61 (88)
T 1wg1_A 11 KNLPQDSNCQEVHDLL----KDYDLK-YCY--V---DRNKRTAFVTLLNGEQAQNAIQMFH 61 (88)
T ss_dssp ESCCSSCCHHHHHHHT----CSSCCC-CEE--E---EGGGTEEEECCSCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCC-EEE--E---CCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7999999999999999----745984-499--6---6768559999879999999999868
No 131
>3cw1_K U1 small nuclear ribonucleoprotein 70 kDa; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=51.80 E-value=7.1 Score=17.19 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=38.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++++.+.+--||..+| ..+|-|+++.+-..+. ...+.++|+.|.+.++|..|+..+.
T Consensus 108 ~nl~~~~te~~l~~~F----~~~G~i~~~~~~~~~~tg~~kG~afV~f~~~~~a~~A~~~l~ 165 (216)
T 3cw1_K 108 ARVNYDTTESKLRREF----EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (216)
T ss_pred CCCCCCCCHHHHHHHH----HHHCCEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCC
T ss_conf 0899878899999999----853986787740137789756517988799999999999818
No 132
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.77 E-value=8.2 Score=16.79 Aligned_cols=51 Identities=27% Similarity=0.323 Sum_probs=37.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467544321000013526899999751
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+.++.+.+.-||..+| ..+|-|.++.+. ..+..+++.|++.++|..+++.+
T Consensus 37 ~nLp~~~te~~L~~~F----~~fG~v~~v~~~-----~~k~~afV~f~~~~~A~~A~~~l 87 (119)
T 2ad9_A 37 RKLPIDVTEGEVISLG----LPFGKVTNLLML-----KGKNQAFIEMNTEEAANTMVNYY 87 (119)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCCCEEEEE-----GGGTEEEEECSCHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCCCCCCC-----CCCCEEEEEECCHHHHHHHHHHH
T ss_conf 6999999999999999----876975521422-----35877999979999999999998
No 133
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=51.32 E-value=10 Score=16.18 Aligned_cols=35 Identities=6% Similarity=-0.068 Sum_probs=28.5
Q ss_pred CCCCCCCC-EEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 36766875-899549989999999999872982999
Q gi|254780761|r 37 KIYHGTSP-LVLLPSCTHEVSQILKLATETNTSITP 71 (473)
Q Consensus 37 ~~~~~~p~-~Vv~P~~~~ev~~iv~~a~~~~i~v~p 71 (473)
.+.+..|. +|+|..+.+|...+.+.+.+.+++++=
T Consensus 2 ~~~~~~Piiavlr~~~~~~a~~~a~al~~~Gi~~iE 37 (212)
T 2v82_A 2 QWQTKLPLIAILRGITPDEALAHVGAVIDAGFDAVE 37 (212)
T ss_dssp CCCSSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 867789889998389999999999999986999899
No 134
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=51.26 E-value=10 Score=16.18 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=32.5
Q ss_pred EEC-CH--HHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 866-98--9987731340136766875899549989999999999872982
Q gi|254780761|r 21 ILD-DQ--KLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTS 68 (473)
Q Consensus 21 v~~-d~--~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~ 68 (473)
+.| || .....|++|-... -..|..=|--.+.|.|..+.++|.+++-.
T Consensus 394 FTT~~p~d~RSs~YctDiAK~-~~aPI~HVN~DdpEav~~a~~lA~~yR~~ 443 (933)
T 2jgd_A 394 FTTSNPLDARSTPYCTDIGKM-VQAPIFHVNADDPEAVAFVTRLALDFRNT 443 (933)
T ss_dssp -------------CGGGGGGT-TTCCEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCHHHHHH-HCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 137983213357762058887-27977896489989999999999999999
No 135
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.14 E-value=10 Score=16.16 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=38.6
Q ss_pred CCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 5302112201332-2322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 178 GDIWNGMHKLIKD-NSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 178 G~i~~~~~~~~~~-~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++-. +++|.+ .+--||..+| ..+|-|..+.+ .+ .+...++.|.+.++|..++..+.
T Consensus 25 ~~~l~V-~nLP~~~~te~~l~~~F----~~fG~v~~~~~--~~---~k~~afV~f~~~~~A~~Ai~~~~ 83 (112)
T 1x4f_A 25 GRVIHL-SNLPHSGYSDSAVLKLA----EPYGKIKNYIL--MR---MKSQAFIEMETREDAMAMVDHCL 83 (112)
T ss_dssp CCEEEE-ESCCCSSCCSHHHHTTT----TTTSCCSEEEE--ET---TTTEEEEECSSHHHHHHHHHHHH
T ss_pred CCEEEE-ECCCCCCCCHHHHHHHH----HHHCCCCEEEE--EE---CCCEEEEEECCHHHHHHHHHHHC
T ss_conf 988998-49997767999999999----97398626888--60---47779999789999999986330
No 136
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=51.09 E-value=6.3 Score=17.52 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=38.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++.+.+.+.-+|.++| +.+|-|.++.+- +. +.+...++.|.+.++|..++..+.
T Consensus 52 ~NL~~~vt~~~L~~~F----~~~G~i~~v~i~--~~-~~~g~afV~f~~~~~A~~Ai~~ln 105 (164)
T 1sjr_A 52 ENLFYPVTLDVLHQIF----SKFGTVLKIITF--TK-NNQFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp CSCCSCCCHHHHHHHH----HHHSCEEEEEEE--ES-SSCEEEEEEESCHHHHHHHHHHST
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEE--EC-CCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 6919999999999997----015866687888--66-998869999799999999999877
No 137
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=50.94 E-value=5 Score=18.17 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=36.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.++.+.+.-||..+| ..+|-|+++.+ .. ..+.+.++.|.+.++|..++.
T Consensus 17 ~nLp~~~te~~l~~~F----~~~G~i~~v~~--~~--~~~g~afV~F~~~e~a~~Al~ 66 (89)
T 3d2w_A 17 GRCTEDMTAEELQQFF----CQYGEVVDVFI--PK--PFRAFAFVTFADDKVAQSLCG 66 (89)
T ss_dssp ESCCTTCCHHHHHHHH----TTTSCEEEEEC--CS--SCCSEEEEEESCHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEE--CC--CCCCCEEEEECCHHHHHHHHH
T ss_conf 4999989999999998----50797799998--32--567827999999999999975
No 138
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.43 E-value=11 Score=16.09 Aligned_cols=43 Identities=26% Similarity=0.462 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 3222333223465454310127994046754432100001352689999975
Q gi|254780761|r 192 SRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 192 ~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
+--||..|| ..+|-|+++.+ .+ .+...|+.|++.++|..|+..
T Consensus 29 t~~eL~~lF----~~fG~I~~v~~--~~---~k~~afV~f~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 29 LRYQLLQLV----EPFGVISNHLI--LN---KINEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp HHHHHHTTT----GGGSCEEEEEE--CS---SSSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHH----HCCCCEEEEEE--EC---CCEEEEEEECCHHHHHHHHHH
T ss_conf 899999998----66576689998--34---650899997998999999988
No 139
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=50.16 E-value=9.1 Score=16.53 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=38.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.++.+.+--||..+| ..+|-|.++.|-..+. ...+.+.|+.|.+.+++..++.
T Consensus 42 ~nLp~~~t~~~l~~~F----~~~G~I~~v~i~~~~~~g~~kg~afV~F~~~~~a~~al~ 96 (124)
T 2jwn_A 42 GNVDYGSTAQDLEAHF----SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp EEECTTCCHHHHHHHH----HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 7969989899999999----964975200112456554666608999899999999997
No 140
>2r2z_A Hemolysin; APC85144, structure initiative, midwest center for structural genomics, MCSG, PSI-2, protein structure initiative; 1.20A {Enterococcus faecalis V583} SCOP: d.145.1.4
Probab=49.81 E-value=7.4 Score=17.09 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 3734551144200222210012322234433432111311222123
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
.+.+..|.+.+.+.+|++.+. .-+| +..+.||||||-..
T Consensus 14 ~~~~~~v~G~~~l~dl~~~~~---~~l~----~~~~~TlgG~i~~~ 52 (93)
T 2r2z_A 14 ADNEYLVQGRMLIDEFNEVFE---TDLH----MSDVDTMAGYLITA 52 (93)
T ss_dssp ETTEEEEETTSBHHHHHHHHT---CCCC----CTTCCBHHHHHHHH
T ss_pred CCCEEEEEEECCHHHHHHHHC---CCCC----CCCCCCHHHHHHHH
T ss_conf 899899994279999999879---7998----77631099999998
No 141
>1fht_A U1A117, U1 small nuclear ribonucleoprotein A; RNP domain, spliceosome; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.57 E-value=5.1 Score=18.10 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=37.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++++.+.+--||..+|..-.+.+|-|+.+.+ .+-...+.++|+.|.+.++|..|+..+.
T Consensus 14 ~nLp~~~te~~L~~~l~~~F~~~G~v~~v~~--~~~~~~kg~aFV~F~~~~~A~~A~~~l~ 72 (116)
T 1fht_A 14 NNLNEKIKKDELKKSLYAIFSQFGQILDILV--SRSLKMRGQAFVIFKEVSSATNALRSMQ 72 (116)
T ss_dssp CCSCTTCCSSSHHHHHHHHHHHHSCEEEEEE--CCSSSSSSCEEEEESSHHHHHHHHTTSS
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCEEEEEE--ECCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 5999999999999999998432786238975--0168978769999898999999999868
No 142
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.50 E-value=7.7 Score=16.98 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=38.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.++.+.+--||..+| ..+|=|+++.+-.-+. ...+.++++.|.+.++|..++..+.
T Consensus 15 nlp~~~~e~~l~~~f----~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~a~~ai~~l~ 71 (104)
T 1p1t_A 15 NIPYEATEEQLKDIF----SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp SCCTTSCHHHHHHHH----HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 999979899999999----741955588764023678877529999899999999999829
No 143
>2oai_A Hemolysin; PFAM03471, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MLY; 1.80A {Xylella fastidiosa TEMECULA1} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=49.33 E-value=6.3 Score=17.54 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 37345511442002222100123222344334321113112221235
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
.+++..|.+-+.+.+|++.+ +..+|.+ .+..+.||||||-...
T Consensus 16 ~dg~~~v~G~~~l~dl~~~l---~~~l~~~-e~~~~~TlgG~v~~~l 58 (94)
T 2oai_A 16 EDGSFLIDGTLPIEELREVL---GAELPDG-EENNYHTLAGMCISYF 58 (94)
T ss_dssp TTSCEEEETTCBHHHHHHHH---TC--------CCCSBHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHH---CCCCCCC-CCCCCCCHHHHHHHHH
T ss_conf 89979998147999999987---8899854-4455100999999985
No 144
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=48.90 E-value=5.7 Score=17.81 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=36.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCC--EEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431--01279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGI--ITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGi--ITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++++.+.+.-||..+| ..+|. |+++.+.--+. ...+..+++.|.+.++|.++++.+.
T Consensus 7 ~nLp~~~te~~l~~~F----~~~G~~~i~~i~~~~~~~~~~~kg~afV~f~~~~~a~~Ai~~ln 66 (90)
T 3p5t_L 7 GNLTWWTTDEDLTEAV----HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp ESCCTTCCHHHHHHHH----HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred CCCCCCCCHHHHHHHH----HHCCCCEEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 8989989899999998----65497179999861256668767609999899999999999739
No 145
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=48.41 E-value=7.9 Score=16.91 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=29.9
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 37345511442002222100123222344334321113112221235
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
.++.-.|.+-+.+.++++.+. .-+|. .+..+.|||||+-...
T Consensus 13 ~dg~~~v~G~~~l~dl~~~~~---~~l~~--e~~~~~Tl~G~i~~~l 54 (90)
T 2p13_A 13 ADGTWLMDGWISIRKASNLLE---HDLVD--EAERYSTLGGYLLWQF 54 (90)
T ss_dssp TTSCEEEETTSBHHHHHHHHT---SCCCC--TTCCCCBHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHC---CCCCC--CCCCCCCHHHHHHHHH
T ss_conf 898699982479999999878---79998--6667502999999986
No 146
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.28 E-value=6.4 Score=17.47 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=36.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+-.+|..+| ..+|=|.++.+. +...++.|.+.++|..|+..+.
T Consensus 15 ~nl~~~~te~~L~~~F----~~~G~i~~v~~~-------~~~afV~f~~~~~A~~Ai~~l~ 64 (90)
T 2dnp_A 15 GNVSAACTSQELRSLF----ERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLN 64 (90)
T ss_dssp ESCCTTCCHHHHHHHH----HHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEC-------CCEEEEEECCHHHHHHHHHHHC
T ss_conf 7999759999999999----844977488762-------6368999899999999999729
No 147
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.77 E-value=8 Score=16.87 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=37.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEE-EEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279-9404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAV-LRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevt-lrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.+|.+.+--||..+| ..+|++..+. +...+--..+..+++.|.+.++|..++.
T Consensus 31 ~nLp~~~te~dl~~~F----~~~g~~~~~i~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 31 KGLPFEAENKHVIDFF----KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp ECCCTTCCHHHHHHHS----CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 7989849599987688----716986278998878999881328999789999999984
No 148
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.69 E-value=8.6 Score=16.66 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 22233322346545431012799404675443210000135268999997510
Q gi|254780761|r 193 RYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 193 G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.-+|..+| ..+|-|.++.+. +. .+-..|+.|.+.++|..|++.+.
T Consensus 31 e~~L~~~F----~~yG~V~~v~i~--~~--~~g~aFV~f~~~~~A~~A~~~~~ 75 (100)
T 2d9o_A 31 KDVLLRLL----QKYGEVLNLVLS--SK--KPGTAVVEFATVKAAELAVQNEV 75 (100)
T ss_dssp HHHHHHHH----HTTSCEEEEEEE--SS--SSSEEEEEESCHHHHHHHHHTCC
T ss_pred HHHHHHHH----HHCCCEEEEEEC--CC--CCCEEEEEECCHHHHHHHHHHCC
T ss_conf 99999999----747995599985--68--99789999899999999999635
No 149
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.53 E-value=9.1 Score=16.51 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=38.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..++...+--||.++| ..+|-|+++.|---+. .+.+.+.++.|.+.++|..++..+.
T Consensus 21 ~nLp~~~t~~~l~~~F----~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~a~~Ai~~l~ 78 (105)
T 1x5u_A 21 GGLDEKVSEPLLWELF----LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp ECCCTTCCHHHHHHHH----HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 0899858799999999----874998896550477875558769999897999999999839
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=47.52 E-value=12 Score=15.81 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=27.6
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC---CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0133223222333223465454310127994046---754432100001352689999975
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP---YRTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p---~p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
..|.+.+--+|..+| ..+|-|..+.+.--+ .+..+.++++.|.+.++|..++..
T Consensus 10 nLp~~~te~~l~~~F----~~~G~i~~i~~~~~~~~~~~~~~g~afv~f~~~~~a~~Ai~~ 66 (175)
T 3nmr_A 10 QVPRTWSEKDLRELF----EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp SCCTTCCHHHHHHHH----HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 999869899999999----970988999998603554557775799996748998888874
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=47.19 E-value=7.7 Score=16.98 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 191 NSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 191 ~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+--||.++| ..+|-|+.+.+. +...++.|.+.++|..|+..+.
T Consensus 40 ~te~~l~~~F----~~~G~i~~v~i~-------~g~~fv~f~~~~~A~~Ai~~ln 83 (110)
T 1wf1_A 40 VKKSDVETIF----SKYGRVAGCSVH-------KGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp CCHHHHHHHH----GGGSCCSEEEEE-------TTEEEEECSSSHHHHHHHHHHT
T ss_pred CCHHHHHHHH----HHCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHHC
T ss_conf 9999999998----705986899980-------6658998477899999999829
No 152
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=46.94 E-value=12 Score=15.88 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=38.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467544321000013526899999751
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+++|.+.+.-||..+| ..+|-|+++.+.... -..+.++++.|.+.++|..++...
T Consensus 47 ~nLp~~~te~~L~~~F----~~~G~I~~v~i~~~~-~~~~g~afV~F~~~e~A~~Ai~~~ 101 (292)
T 2ghp_A 47 KNLPKSYNQNKVYKYF----KHCGPIIHVDVADSL-KKNFRFARIEFARYDGALAAITKT 101 (292)
T ss_dssp EEECTTCCHHHHHHHH----GGGSCEEEEEEEECT-TSSSEEEEEEESSHHHHHHHHTTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEECCCC-CCCCCEEEEEEEEHHHHHHHHHHC
T ss_conf 5899889999999999----852985488750467-789867999997518899986525
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.65 E-value=12 Score=15.82 Aligned_cols=50 Identities=8% Similarity=0.146 Sum_probs=34.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.++.+.+.-||..+| ..+|-|+++.+ .+ ....+.++.|.+-+++..++.
T Consensus 14 ~nl~~~~te~~l~~~F----~~~G~I~~v~i--~~--~~~~f~fV~f~~~e~a~~al~ 63 (94)
T 2e5g_A 14 SGFPRGVDSAQLSEYF----LAFGPVASVVM--DK--DKGVFAIVEMGDVGAREAVLS 63 (94)
T ss_dssp ECCCTTCCHHHHHHHG----GGTSCEEEEEE--CS--SSCCEEEEEESSHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HCCCEEEEEEE--EC--CCCCEEEEEECCHHHHHHHHH
T ss_conf 5999868999999985----21777989999--76--999789999899999999986
No 154
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated domain, CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis W83} SCOP: d.145.1.4
Probab=46.64 E-value=5.9 Score=17.68 Aligned_cols=43 Identities=7% Similarity=0.046 Sum_probs=29.6
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHCC
Q ss_conf 3734551144200222210012322234-433432111311222123
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFP-LSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p-~~p~s~~~aTvGG~ia~~ 152 (473)
.+.+..|.+.+.+.+|++.+.-. ++ .+..+..+.|||||+-..
T Consensus 13 ~~~~~~v~G~~~l~dl~~~l~i~---l~~~~~~~~~~~TlgG~i~~~ 56 (93)
T 2nqw_A 13 GDGSYLFEGKTSLSDVRHYLDLP---ENAFGELGDEVDTLSGLFLEI 56 (93)
T ss_dssp TTSCEEEETTCBHHHHHHHHTCC---TTTTHHHHTTCSBHHHHHHHH
T ss_pred CCCEEEEEEECCHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHHHH
T ss_conf 89989999537999999986999---764544565411199999998
No 155
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=46.36 E-value=3.8 Score=18.93 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 01332232223332234654543101279940467-54432100001352689999975
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
+.+.+.+--||..+| +.+|-|+++.|-..+. .+.+.+.++.|.+.++|..++..
T Consensus 6 nL~~~~te~~l~~~F----~~~G~i~~v~i~~d~~t~~~kG~~FV~F~~~~~a~~al~~ 60 (75)
T 1iqt_A 6 GLSPDTPEEKIREYF----GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CCCSSCCHHHHHHHH----HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHC
T ss_conf 899989799999998----7329989999887058899540899998889999999832
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=45.99 E-value=12 Score=15.66 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=35.4
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 01332232223332234654543101279940467544321000013526899999751
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+.|.+.+--+|..+| ..+|-|+.+.+..-+....+...++.|.+.++|..++..+
T Consensus 7 nLp~~~te~~l~~~f----~~~G~i~~v~i~~~~~~~~~g~afv~f~~~~~a~~ai~~~ 61 (166)
T 3md3_A 7 NLDKAITEDILKQYF----QVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTL 61 (166)
T ss_dssp EEETTCCHHHHHHHH----GGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 999858899999999----8429878999986033254642243058889999999972
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.48 E-value=13 Score=15.61 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=39.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 20133223222333223465454310127994046-75443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP-YRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p-~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.+|.+.+--||.++| ..+|.+......+.. ....+.++++.|.+.++|.+++.
T Consensus 21 ~nLP~~~te~dI~~~F----~~~g~v~~~i~~~~~~~~~~~G~aFV~F~~~~~a~~al~ 75 (104)
T 1wg5_A 21 RGLPFGCSKEEIVQFF----SGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp ESCCTTCCHHHHHHHT----TTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 7999879999999998----773984189999767889705179999899999999996
No 158
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.38 E-value=9 Score=16.55 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=37.1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEE-EEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 20133223222333223465454310127-9940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGA-VLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITev-tlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+..||..+| ..+|-|+++ .+..-+. ...+.+.++.|.+.++|..++..+.
T Consensus 11 ~nLp~~~te~~L~~~F----~~~G~i~~~~~i~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 69 (96)
T 1x5t_A 11 GNLDPEIDEKLLYDTF----SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69 (96)
T ss_dssp ECCCTTCCHHHHHHHH----HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHCC
T ss_conf 4999858899999998----5216244678987507778370299999899999999999819
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, U11/U12 DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=45.04 E-value=4.3 Score=18.56 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=36.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE------CCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940------4675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRL------LPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl------~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+..+.+.+-.+|..+| +.+|-|..+.++. ......+.++|+.|.+.++|..|+..+.
T Consensus 51 ~NLp~~~te~~l~~~F----~~~G~i~~~~~~~~~~~~~~~~g~~kg~afV~f~~~~~A~~Al~~l~ 113 (143)
T 3egn_A 51 KNLAKHVQEKDLKYIF----GRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp EEECTTCCHHHHHHHH----GGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCEEEEEEEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHC
T ss_conf 6999879899999999----85598138998877656542689823368874099999999999868
No 160
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.81 E-value=8.3 Score=16.78 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=37.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+++|.+.+-.||..+| .-+|.+....+ . ...+.+.|+.|.+.++|..+++.+.
T Consensus 25 ~Nlp~~~~~~~L~~~F----~~~G~v~~~~~--~--~~~rg~aFV~f~~~~~a~~Ai~~l~ 77 (97)
T 2e5j_A 25 GNLPRDARVSDLKRAL----RELGSVPLRLT--W--QGPRRRAFLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp ECCCTTCCHHHHHHHH----HHTTCCCSEEE--E--ETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCEEEEE--E--CCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 6959979899999999----98799704106--0--3898789999827588999999859
No 161
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.72 E-value=11 Score=16.12 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=35.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..+|.+.+--+|..+| +.+|-|+.+.+ ++.+...++.|.+.++|..++....
T Consensus 18 ~nlp~~~t~~~l~~~F----~~~G~i~~~~~-----~~~~~~afV~f~~~~~A~~A~~~~~ 69 (85)
T 2ytc_A 18 GGLGDTITETDLRNHF----YQFGEIRTITV-----VQRQQCAFIQFATRQAAEVAAEKSF 69 (85)
T ss_dssp ECCTTTSCHHHHHHHH----HTTSCEEEEEE-----EGGGTEEEEEESSHHHHHHHHHTTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCCEEEE-----CCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 6999999999999998----63099724787-----2557389999877999999999851
No 162
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.48 E-value=11 Score=16.05 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=34.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| +.+|-| .+...+-.+.+.+.|+.|.+.++|..++..+.
T Consensus 21 ~nLp~~~te~~l~~~F----~~~g~v---~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 74 (101)
T 2fc9_A 21 SNLSYSATEETLQEVF----EKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 74 (101)
T ss_dssp ESCCTTCCHHHHHHHC----SSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHH----HCCCEE---EEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 3899989899999997----549869---99988999826539999899999999999849
No 163
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A
Probab=43.58 E-value=13 Score=15.57 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=35.2
Q ss_pred ECC-CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013-322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLI-KDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~-~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.| ++.+--||..+| ..+|-|.++.++ +...++.|.+.++|..|+..+.
T Consensus 29 nLp~~~~te~dL~~~F----~~~G~i~~v~~~-------~g~afV~f~~~~~A~~Ai~~ln 78 (97)
T 2xnq_A 29 NLPLKNVSKEDLFRIF----SPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXES 78 (97)
T ss_dssp SCCSSCCCHHHHHHHH----GGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHCC
T ss_conf 9998989999999998----854995799985-------8878998699999999999809
No 164
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=43.36 E-value=12 Score=15.86 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=38.2
Q ss_pred HHHHHHHHH---HCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 899999997---338441866989987731340136766875899--549989999999999872982999
Q gi|254780761|r 6 LDLIQRFIS---IVGSEGILDDQKLISPYLTEERKIYHGTSPLVL--LPSCTHEVSQILKLATETNTSITP 71 (473)
Q Consensus 6 ~~~~~~l~~---i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv--~P~~~~ev~~iv~~a~~~~i~v~p 71 (473)
++|.++|.+ -+|=.+|-..|-.-.++..+|...|+..-- -+ +=+|.+|..++|+.|++++|.|+.
T Consensus 14 ~~i~~~~~~yl~~~G~t~I~l~Pv~e~~~~~~wy~gY~~~~Y-~i~~r~Gt~~dlk~LV~~aH~~GI~Vil 83 (448)
T 1g94_A 14 QDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAAGVDIYV 83 (448)
T ss_dssp HHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC-EECCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999999709988996948368999987446888774-3689999999999999999987999999
No 165
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.03 E-value=10 Score=16.18 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=37.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..++.+.+.-||..+| ..+|=|.++.+ .+ .+...++.|.+.++|..|+..+.
T Consensus 31 ~nL~~~~te~~L~~~F----~~~G~I~~v~~--~~---~kg~afV~f~~~~~A~~Ai~~ln 82 (109)
T 1x4g_A 31 GGIASGLTDQLMRQTF----SPFGQIMEIRV--FP---EKGYSFVRFSTHESAAHAIVSVN 82 (109)
T ss_dssp ECCSSCCCHHHHHHHH----HHHSCEEEEEE--ET---TTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEE--EC---CCCEEEEEECCHHHHHHHHHHHC
T ss_conf 3899989999999999----86298789998--62---56168999889999999999839
No 166
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.61 E-value=14 Score=15.34 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=35.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.+|.+.+--||..+|- .+|+ ..+.+-.-+--..+..+++.|.+.++|-.++.
T Consensus 22 ~nLp~~~te~~i~~~F~----~~g~-~~v~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 22 HGMPFSAMENDVRDFFH----GLRV-DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp ECCCSSCCHHHHHHHTT----TSCC-CEEEECCCTTCCCCSEEEEECSSHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHC----CCCC-EEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 79998698999999854----5694-38999767888877739999899999999984
No 167
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.40 E-value=7.8 Score=16.94 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=39.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++.+.+.+.-||.++|..--+..|-|..+.++ +....+.+.|+.|++.++|..+++.+.
T Consensus 15 ~NL~~~~t~~el~~~l~~~F~~~g~v~~v~~~--~~~~~kG~aFV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 15 SNIDYRLSRKELQQLLQEAFARHGKVKSVELS--PHTDYQLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--SCCSTTCCEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCCCEEEEEEEECHHHHHHHHHHC
T ss_conf 88999868568766565431125740345642--354568789999936064889999869
No 168
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, ketoacid dehydrogenase, branched-chain, multi- enzyme complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=42.30 E-value=14 Score=15.31 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf 8999999999987298299975887776540
Q gi|254780761|r 52 THEVSQILKLATETNTSITPQGGNTGLVGGQ 82 (473)
Q Consensus 52 ~~ev~~iv~~a~~~~i~v~prGggt~~~G~~ 82 (473)
.+.+.+.+..+-+.+=.++..|...+ .||+
T Consensus 24 ~~ai~~al~~~~~~d~~v~~~g~dv~-~gg~ 53 (342)
T 2bfd_B 24 FQSVTSALDNSLAKDPTAVIFGEDVA-FGGV 53 (342)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEETTTT-TTCT
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-CCCC
T ss_conf 99999999999956989899958756-7861
No 169
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.37 E-value=5.2 Score=18.06 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.+.+.+--||..+| ..+|.|+.+.+. +.+.+.++.|.+.++|..+++.+.
T Consensus 15 nlp~~~te~~l~~~F----~~~G~v~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~ 65 (93)
T 2cqh_A 15 NLSPAVTADDLRQLF----GDRKLPLAGQVL-----LKSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CCCTTCCHHHHHHHH----HHTTCCCSSCEE-----EETTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HHHCCCCEEEEC-----CCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 889878799999988----752014314440-----467558999899999999999827
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=41.30 E-value=15 Score=15.21 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32223332234654543101279940467-544321000013526899999751
Q gi|254780761|r 192 SRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 192 ~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+--+|.++| +.+|-|..+.+...+. .+.+...++.|.+.++|..+++.+
T Consensus 101 ~~~~i~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l 150 (167)
T 1fxl_A 101 TQKELEQLF----SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 150 (167)
T ss_dssp CHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHH----HHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 999999999----87598242788404888985785699979999999999997
No 171
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.06 E-value=8.2 Score=16.80 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=37.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC---CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467---5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY---RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~---p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+.-||..+| ..+|-|+....++..- -..+.+.|+.|.+.++|..++....
T Consensus 14 gnLp~~~te~~L~~~F----~~~G~i~v~~~~~~~d~~tg~~kGfaFV~F~~~e~a~~Al~~~~ 73 (114)
T 2dnl_A 14 GGLPPDIDEDEITASF----RRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp ECCCTTCCHHHHHHHT----TTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCCCCHHHHHHHH----HHCCCEEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 0999765878999999----85698798887886306789877679999789999999998665
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 2kxf_A 2kxh_A
Probab=40.10 E-value=15 Score=15.09 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=36.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-544321000013526899999751
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+..+.+.+--||..+| ..+|-|.++.+...+. -..+.++++.|.+.++|..++..+
T Consensus 34 ~nLp~~~tee~L~~~F----~~~G~I~~i~i~~~~~~~~~kG~afV~f~~~~~a~~a~~~~ 90 (216)
T 2qfj_A 34 GSIYYELGEDTIRQAF----APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp ECCCTTCCHHHHHHHH----GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 6999858899999999----86098799999754888951428999968589999999862
No 173
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=39.89 E-value=11 Score=16.10 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 194 YDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 194 ~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
-+|..+| ..+|-|+++++-..+. ...+..+++.|.+.++|.+|+..+.
T Consensus 27 ~~L~~~F----~~~G~I~~v~i~~d~~tg~~~g~afv~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 27 KALTSLF----SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75 (100)
T ss_dssp HHHHHHH----HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHH----HHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 9999999----845988999998428999716669999899999999999867
No 174
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=39.84 E-value=13 Score=15.61 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=36.1
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC---CCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 0133223222333223465454310127994046---75443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP---YRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p---~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.++.+.+.-||..+| ..+|.+.-+.+++.. -...+.++|+.|.+.++|..++..+.
T Consensus 62 nLp~~~te~~L~~~F----~~~G~~~v~~i~i~~d~~t~~~~g~afV~F~~~~~a~~Ai~~l~ 120 (156)
T 3n9u_C 62 SFSWWTTDQQLIQVI----RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP 120 (156)
T ss_dssp CCCTTCCHHHHHHHH----HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 899968999999999----75494247665787517899868868997699999999999819
No 175
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2qq1_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=39.62 E-value=16 Score=15.05 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=24.3
Q ss_pred CEEEECCCHHHHHHHHH-HHHHCCCCEEEECCCCCCC
Q ss_conf 58995499899999999-9987298299975887776
Q gi|254780761|r 44 PLVLLPSCTHEVSQILK-LATETNTSITPQGGNTGLV 79 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~-~a~~~~i~v~prGggt~~~ 79 (473)
...+.|.+.+++++.+. +|.+.++-++.-.||||+.
T Consensus 45 ~~~iVpDd~~~I~~~l~~~~~~~~~dlIiTTGGtG~~ 81 (178)
T 2pbq_A 45 EYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPA 81 (178)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 8999688679999999999873798389973665478
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.40 E-value=8.7 Score=16.64 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 13322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 187 LIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 187 ~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+.+.+--+|..+| ..+|-|.++.+ . +.+...|+.|.+.++|.+|+..+.
T Consensus 35 L~~~~te~~L~~~F----~~~G~i~~v~~--~---~~k~~aFV~f~~~~~A~~A~~~ln 84 (114)
T 2cq2_A 35 LGNGVSRNQLLPVL----EKCGLVDALLM--P---PNKPYSFARYRTTEESKRAYVTLN 84 (114)
T ss_dssp GGGTCCHHHHHHHH----HHHSCEEEEEC--C---TTCSCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHH----HHCCCEEEEEE--E---CCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 89998899999999----85299279999--5---689889999889999999999838
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)- 3'); splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=39.20 E-value=16 Score=15.01 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2232223332234654543101279940467-544321000013526899999751
Q gi|254780761|r 190 DNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 190 ~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+.+--+|.++| ..+|.|.++.+..... .+.+..+++.|.+.++|..+++.+
T Consensus 100 ~~~e~~l~~~f----~~~G~v~~~~i~~~~~~~~~~~~afV~f~~~~~A~~Ai~~l 151 (168)
T 1b7f_A 100 TITDDQLDTIF----GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp TCCHHHHHHHH----TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHH----HHCCEEEECCEEEECCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 67999999999----76590601101340688972415999988999999999986
No 178
>2o3g_A Putative protein; APC85631.1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.55A {Neisseria meningitidis MC58} SCOP: d.145.1.4
Probab=39.10 E-value=12 Score=15.84 Aligned_cols=41 Identities=5% Similarity=0.167 Sum_probs=28.8
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 3734551144200222210012322234433432111311222123
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
.++...|.+.+.+.++++.+ ++-+|. ....+.|||||+-..
T Consensus 15 ~dg~~~v~G~~~l~dl~~~l---~~~l~~--~~~~~~Tl~G~i~~~ 55 (92)
T 2o3g_A 15 PDESLTVEGALEYVELAPQL---NLPQQE--EDADFHTVAGLIMEE 55 (92)
T ss_dssp --CCSEEETTCBHHHHTTTT---TCCCCC--TTCSCSBHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHH---CCCCCC--CCCCCEEHHHHHHHH
T ss_conf 99849998016999999976---989986--455630489999998
No 179
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa}
Probab=39.00 E-value=13 Score=15.54 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.7
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 37345511442002222100123222344334321113112221235
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
.+....|.+.+.+.++++.+ |+-+| +..+.|||||+-...
T Consensus 7 ~~~~~~v~G~~~l~dl~~~~---~~~l~----~~~~~TlgG~i~~~~ 46 (83)
T 3llb_A 7 PSGDFIVKALTPVDAFNDFF---GSEFS----DEEFDTVGGLVMSAF 46 (83)
T ss_dssp TTSCEEEETTCBHHHHHHHH---CCCCC----TTTCSBHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHH---CCCCC----CCCCHHHHHHHHHHH
T ss_conf 89849999417999999987---96999----765240999999983
No 180
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=38.86 E-value=16 Score=14.97 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=21.4
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 5899549989999999999872982999
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITP 71 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~p 71 (473)
..|++..+.+++.++.+.+.+.+++++=
T Consensus 20 ipvlr~~~~~~~~~~~~al~~~Gi~~iE 47 (224)
T 1vhc_A 20 VPVIALDNADDILPLADTLAKNGLSVAE 47 (224)
T ss_dssp EEEECCSSGGGHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999689999999999999987998899
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, alternative splicing, ATP-binding; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=36.93 E-value=17 Score=14.78 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=36.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+++.+.+--||..+| ..+|-|+.+.+. . ..+.++.|.+.++|..|+..+.
T Consensus 22 ~NLp~~~t~~dL~~~F----~~~G~V~~~~i~--~----~g~afV~F~s~e~A~~Ai~~ln 72 (115)
T 3beg_B 22 SGLPPSGSWQDLKDHM----REAGDVCYADVY--R----DGTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp EECCSSCCTTHHHHHH----GGGSCEEEEEEC--T----TSEEEEEESSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHH----CCCCEEEEEEEC--C----CCCEEEEECCHHHHHHHHHHHC
T ss_conf 7898989999999984----138459876752--6----8846888899999999999978
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=36.69 E-value=14 Score=15.40 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 332232223332234654543101279940467544321000013526899999751
Q gi|254780761|r 188 IKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 188 ~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
|++.+--+|..+| +-+|-|.++.+ .+ ..+..+++.|.+.++|..++...
T Consensus 13 p~~~te~~l~~~F----~~~G~V~~v~~--~~--~~kg~afV~f~~~~~a~~a~~~~ 61 (198)
T 1qm9_A 13 PERVTPQSLFILF----GVYGDVQRVKI--LF--NKKENALVQMADGNQAQLAMSHL 61 (198)
T ss_dssp SSSCCHHHHHHHH----HTTCCCSEEEC--ST--TCSSCCEEECTTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH----HCCCCEEEEEE--EE--CCCCEEEEEECCCHHHHHHHHHC
T ss_conf 4779999999997----60598899999--98--99977999982455799999852
No 183
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=36.63 E-value=17 Score=14.75 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=12.8
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 99549989999999999872982999758
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
...+.-.+.+.+.+.-.-+.+=.|+..|.
T Consensus 48 ~~~~~~~~a~~~al~~~~~~d~~vv~~g~ 76 (369)
T 1ik6_A 48 VMMANMAKAINMALHEEMERDERVVVLGE 76 (369)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 46664999999999999966989999947
No 184
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=36.52 E-value=17 Score=14.74 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=15.0
Q ss_pred CEEEECCCHHHHHHHHHH-HHHCCCCEEEECCCCCC
Q ss_conf 589954998999999999-98729829997588777
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKL-ATETNTSITPQGGNTGL 78 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~-a~~~~i~v~prGggt~~ 78 (473)
...+.|++.+++.+.++- +.+.+.-++.-.||||.
T Consensus 55 ~~~ivpDd~~~I~~~l~~~~~~~~~DlViTTGGtg~ 90 (189)
T 1jlj_A 55 AYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGF 90 (189)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 999968978999999999875237768997675566
No 185
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.51 E-value=14 Score=15.44 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=35.3
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..|.+.+.-||..+| ..+|-|..+.+ . ..+...++.|.+.++|..+++...
T Consensus 23 nLp~~~te~~L~~lF----~~~G~V~~~~~--~---~~kg~afV~f~~~~~A~~Ai~~~~ 73 (105)
T 1sjq_A 23 KLPIDVTEGEVISLG----LPFGKVTNLLM--L---KGKNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp SCCTTSCHHHHHHHH----HHHCCEEEEEE--E---TTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HCCCEEEEEEC--C---CCCEEEEEEECCHHHHHHHHHHHH
T ss_conf 999998999999986----35788925531--6---642589999899999999999985
No 186
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} SCOP: c.67.1.9
Probab=36.31 E-value=18 Score=14.72 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98999999999987
Q gi|254780761|r 51 CTHEVSQILKLATE 64 (473)
Q Consensus 51 ~~~ev~~iv~~a~~ 64 (473)
+.++|...++....
T Consensus 64 ~~~~i~~~l~~l~~ 77 (456)
T 2z67_A 64 DDEKIKLFLKFLSM 77 (456)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999862
No 187
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=36.02 E-value=3 Score=19.58 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=36.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.++.+.+--||..+| ..+|-|..+.+.-.+-...+.+.++.|.+.+++..++.
T Consensus 23 ~nLp~~~te~~L~~~F----~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~a~~Al~ 76 (101)
T 1fj7_A 23 GNLNPNKSVAELKVAI----SELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp ECCCTTSCHHHHHHHH----HHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHH----HCCCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 7988777089988666----42885899998878889854114899789999999997
No 188
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=35.64 E-value=9.3 Score=16.46 Aligned_cols=20 Identities=15% Similarity=0.528 Sum_probs=9.4
Q ss_pred HHHHHHHHHHCCCCEEE-ECC
Q ss_conf 99999999872982999-758
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGG 74 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGg 74 (473)
|.++|++|++++|+|-| ||+
T Consensus 344 v~diV~~Ak~~gi~vGpgRGS 364 (910)
T 2hnh_A 344 VMEFIQWSKDNGVPVGPGRGS 364 (910)
T ss_dssp HHHHHHHHHHTTCCBCSCCTT
T ss_pred HHHHHHHHHHCCEEECCCCCC
T ss_conf 999999999789452468881
No 189
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=35.55 E-value=18 Score=14.65 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=44.4
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECC-CCCCCCCCCCCCCEEEECCCCC--HH
Q ss_conf 58995499899999999998729829997588777654010488866999763-0027742112373455114420--02
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIK-RMNRIRDIDLRSNTIAVDAGIN--LF 120 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~-~mn~il~id~~~~~v~veaGv~--~~ 120 (473)
..|++..+.+|...+.+.+.+.+++++=.. ++.. .++.|-.+-.+-..+.+++|.. ..
T Consensus 19 ipvir~~~~~~a~~i~~al~~~Gi~~iEIt-------------------l~tp~a~~~i~~l~~~~p~~~iGaGTV~~~e 79 (214)
T 1wbh_A 19 VPVIVVKKLEHAVPMAKALVAGGVRVLNVT-------------------LRTECAVDAIRAIAKEVPEAIVGAGTVLNPQ 79 (214)
T ss_dssp EEEECCSSGGGHHHHHHHHHHTTCCEEEEE-------------------SCSTTHHHHHHHHHHHCTTSEEEEESCCSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEE-------------------CCCHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 999978999999999999998799889993-------------------7986799999999987899679524545368
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 222100123222344334
Q gi|254780761|r 121 NVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 121 ~l~~~l~~~g~~~p~~p~ 138 (473)
++++. ...|-.|-++|.
T Consensus 80 ~~~~a-~~aGa~FivsP~ 96 (214)
T 1wbh_A 80 QLAEV-TEAGAQFAISPG 96 (214)
T ss_dssp HHHHH-HHHTCSCEEESS
T ss_pred HHHHH-HHCCCCEEECCC
T ss_conf 99999-981998998589
No 190
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=35.51 E-value=13 Score=15.46 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 233322346545431012799404675443210000135268999997510
Q gi|254780761|r 195 DIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 195 dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+|..+| +.+|-|.++.+-. +....+.++++.|.+-++|..+++.+.
T Consensus 23 ~L~~~F----~~~G~I~~v~~~~-~~g~~~g~afv~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 23 VIHKIF----SKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp HHHHHH----HTTCCEEEEECCC-BTTBCCCEEEEEESSHHHHHHHHTTSS
T ss_pred HHHHHH----HCCCCEEEEEEEC-CCCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 999998----5169589999989-999955189999899999999999865
No 191
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A
Probab=34.98 E-value=18 Score=14.59 Aligned_cols=74 Identities=9% Similarity=0.066 Sum_probs=42.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECC-CCCCCCCCCCCCCEEEECCCCC--H
Q ss_conf 758995499899999999998729829997588777654010488866999763-0027742112373455114420--0
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIK-RMNRIRDIDLRSNTIAVDAGIN--L 119 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~-~mn~il~id~~~~~v~veaGv~--~ 119 (473)
-..|++..+.+|..++.+.+.+.+++++=.. ++.. .++-|..+... .+.+++|.. .
T Consensus 15 iipvlr~~~~~~a~~~~~al~~~Gi~~iEit-------------------l~tp~a~~~i~~l~~~--~~~iGaGTV~~~ 73 (207)
T 2yw3_A 15 LLPLLTVRGGEDLLGLARVLEEEGVGALEIT-------------------LRTEKGLEALKALRKS--GLLLGAGTVRSP 73 (207)
T ss_dssp EEEEECCCSCCCHHHHHHHHHHTTCCEEEEE-------------------CSSTHHHHHHHHHTTS--SCEEEEESCCSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEE-------------------CCCCHHHHHHHHHCCC--CCEEEEHHCCCH
T ss_conf 7999968999999999999998799889996-------------------8992299999985457--858931120577
Q ss_pred HHHHHHCCCCCCCCCCCCC
Q ss_conf 2222100123222344334
Q gi|254780761|r 120 FNVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 120 ~~l~~~l~~~g~~~p~~p~ 138 (473)
.++++. ...|-.|-++|.
T Consensus 74 ~~~~~a-~~aGa~FivSP~ 91 (207)
T 2yw3_A 74 KEAEAA-LEAGAAFLVSPG 91 (207)
T ss_dssp HHHHHH-HHHTCSEEEESS
T ss_pred HHHHHH-HHCCCCEEECCC
T ss_conf 899999-980999898588
No 192
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.92 E-value=9.9 Score=16.28 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=35.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEE------EEEECCC---CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 20133223222333223465454310127------9940467---5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGA------VLRLLPY---RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITev------tlrl~p~---p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..++.+.+--||.++|- .+|.|... .+++..- ...+.++++.|.+.++|..|+..+.
T Consensus 21 ~nL~~~~te~dL~~~F~----~~G~i~~~~~~~~~~~~~~~d~~~g~~kg~afV~f~~~e~a~~Ai~~ln 86 (113)
T 2cpe_A 21 QGLNDSVTLDDLADFFK----QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp ECCCTTCCHHHHHHHHT----TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHH----HCCEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 59999898999999998----7365766234565235455507779606408999899999999999869
No 193
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transport protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=34.53 E-value=18 Score=14.67 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 3734551144200222210012322234433432111311222123
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
.+..-.|.+.+.+.++++++. +-+| +..+-|||||+-..
T Consensus 10 ~~~~~~v~G~~~l~dl~~~l~---~~l~----~~~~~Tl~G~v~~~ 48 (101)
T 2p3h_A 10 SPDKWLIDGDTPLDEVERAIG---YELP----EGDYETISGLLFDH 48 (101)
T ss_dssp ETTEEEEETTCBHHHHHHHHT---SCCC----CSSCCBHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHC---CCCC----CCCCHHHHHHHHHH
T ss_conf 799699981369999999878---8998----76711199999998
No 194
>3h2u_B Raver-1; focal adhesion, actin cytoskeleton, RNP motif, RNA binding, alternative splicing, cytoplasm, nucleus, phosphoprotein, RNA-binding; 2.75A {Homo sapiens} PDB: 3h2v_E
Probab=34.09 E-value=19 Score=14.50 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=33.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 013322322233322346545431012799404675-44321000013526899999751
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
..+.+.+.-+|..+| ..+|-|.++.+-..+.. ..+...++.|.+.++|..++..+
T Consensus 100 nlp~~~t~~~l~~~F----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 155 (283)
T 3h2u_B 100 NLPPSLTQQQFEELV----RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 155 (283)
T ss_dssp SCCTTCCHHHHHHHH----STTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH----HHCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 898657299999999----74487630367730678985752999958999999999985
No 195
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=34.06 E-value=17 Score=14.85 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=35.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| +.+|-|..+.. ....+.++++.|.+.++|..++..+.
T Consensus 22 ~nLp~~~t~~~l~~~F----~~~g~v~~~~~----~~~~~~~afV~f~~~~~A~~Ai~~l~ 74 (96)
T 1fjc_A 22 KNLSFNITEDELKEVF----EDALEIRLVSQ----DGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp ESCCSSCCHHHHHHHH----CSEEEECCEEE----TTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHH----HHHCCCEEECC----CCCCCCCCEEEECCHHHHHHHHHHHC
T ss_conf 2899989999999999----86345433234----78878700576589999999999809
No 196
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.61 E-value=18 Score=14.63 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=35.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|.|....++ ..+.+.|+.|.+.++|..++..+.
T Consensus 21 ~nLp~~~t~~~l~~~F----~~~g~i~~~~~~-----~~rg~afV~f~~~~~A~~Ai~~l~ 72 (99)
T 2cpd_A 21 RNLMLSTSEEMIEKEF----NNIKPGAVERVK-----KIRDYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp ESCCTTCCHHHHHHHH----HTTSTTCEEEEE-----ECSSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHH----HCCCEEEECCCC-----CCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 5999878999999987----167468882268-----618869999799999999999809
No 197
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.23 E-value=5.8 Score=17.73 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=38.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.++.+.+--||..+| ..+|-|..+.+...+. ...+.++++.|.+.++|..+++.+.
T Consensus 31 ~nLp~~~te~~L~~~f----~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~al~~ln 88 (115)
T 2cpx_A 31 KNLSPRVTERDLVSLF----ARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN 88 (115)
T ss_dssp ECCCTTCCHHHHHHHT----HHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST
T ss_pred ECCCCCCCHHHHHHHH----HHCCCEEEEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 0999758799999999----974967888762106779747735688799999999999878
No 198
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.45 E-value=11 Score=16.00 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=33.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
+.++.+.+.-||..+| ..+|-|+++. +.. ..+.+.++.|.+.++|..++.
T Consensus 11 gnlp~~~te~dl~~~F----~~~G~v~~~~--~~~--~~~~~afV~f~~~~~a~~ai~ 60 (88)
T 1wf0_A 11 GRCTGDMTEDELREFF----SQYGDVMDVF--IPK--PFRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp ESCCSSSCHHHHHHHS----TTTSCCCEEE--CCS--SCCSCCEEECSCHHHHHHTTT
T ss_pred ECCCCCCCHHHHHHHH----HHHCCCEEEE--EEE--CCCEEEEEEECCHHHHHHHHC
T ss_conf 6999999999999999----9869870899--810--354189999899999999970
No 199
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=31.35 E-value=15 Score=15.22 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=34.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 01332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
..|.+.+--||..+| ..+|.+..+.+...+. ...+...++.|.+.++|.+++.
T Consensus 6 nLp~~~t~~~l~~~f----~~~g~~~~~~~~~~~~~~~~~~~afV~f~~~e~a~~a~~ 59 (75)
T 2mss_A 6 GLSVNTTVEDVKHYF----EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CCCSSCCHHHHHHHH----HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHH----HHHCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 899989899999998----871966778998717876311089999899999999984
No 200
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=31.17 E-value=18 Score=14.71 Aligned_cols=35 Identities=20% Similarity=0.593 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 444332346665302112201332232223332234654543101
Q gi|254780761|r 167 LCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIIT 211 (473)
Q Consensus 167 ~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiIT 211 (473)
|.+.+++|+|++.++..- +. .. .+-|++|-+||..
T Consensus 1 Mt~~l~IvtP~~~~~~~~--v~-~V-------~~p~~~G~~gILp 35 (138)
T 2rq6_A 1 MVMTVRVIAPDKTVWDAP--AE-EV-------ILPSTTGQLGILS 35 (138)
T ss_dssp CCEEEEEECSSSEEEEEE--ES-EE-------EECCTTSCEEEES
T ss_pred CEEEEEEECCCCEEEEEE--EE-EE-------EEECCCCCCEECC
T ss_conf 978999997995488446--78-99-------9977946614058
No 201
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=30.37 E-value=21 Score=14.27 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=14.9
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 9954998999999999987298299
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSIT 70 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~ 70 (473)
|++-.+.+|...+.+.+.+.+++++
T Consensus 31 vi~~~~~~~a~~~a~al~~~Gi~~i 55 (225)
T 1mxs_A 31 VITIAREEDILPLADALAAGGIRTL 55 (225)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEE
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9975999999999999998799889
No 202
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.33 E-value=21 Score=14.27 Aligned_cols=42 Identities=14% Similarity=-0.039 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 333223465454310127994046754432100001352689999975102
Q gi|254780761|r 196 IRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQK 246 (473)
Q Consensus 196 l~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 246 (473)
|..+| ..+|-|.++.+ . +.+...++.|.+.++|..|+..+..
T Consensus 27 l~~lF----~~~G~i~~~~~--~---~s~~~afV~f~~~~~A~~A~~~l~g 68 (104)
T 1wey_A 27 FESLF----RTYDKDTTFQY--F---KSFKRVRINFSNPLSAADARLRLHK 68 (104)
T ss_dssp HHHHH----HTTCSSCEEEE--E---TTTTEEEEECSSTTHHHHHHHTSTT
T ss_pred HHHHH----CCCCCCEEEEE--E---CCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 99972----83655179997--0---6785899998999999999998499
No 203
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 1aud_A 1dz5_A 1m5o_C* 1m5k_C* 1m5p_C* 1m5v_C* 1sj3_P ...
Probab=29.97 E-value=9.8 Score=16.32 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=35.1
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.++.+.+--||.+.|..--+.+|=|..+. +.+....+..+|+.|.+.++|..++..+.
T Consensus 15 nL~~~~~~~~l~~~l~~~f~~~g~i~~i~--~~~~~~~~g~aFV~F~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 15 NLNEKIKKDELKKSLHAIFSRFGQILDIL--VSRSLKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp SCCTTSCHHHHHHHHHHHHGGGSCEEEEE--CCHHHHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEE--ECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 99999999999999999736688879999--85799957359999899999999999859
No 204
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=29.78 E-value=21 Score=14.26 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=15.8
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHC
Q ss_conf 6766875899549989999999999872
Q gi|254780761|r 38 IYHGTSPLVLLPSCTHEVSQILKLATET 65 (473)
Q Consensus 38 ~~~~~p~~Vv~P~~~~ev~~iv~~a~~~ 65 (473)
.|+.....=|..+|.+--.+|...|.-|
T Consensus 10 fy~~rv~lNvLA~d~~NAkei~eAaeG~ 37 (249)
T 3m0z_A 10 FYRDRVCLNVLAGSKDNAREIYDAAEGH 37 (249)
T ss_dssp CBTTTBCEEEECSSHHHHHHHHHHTTTC
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHCCC
T ss_conf 6416235431028744099999984586
No 205
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=29.77 E-value=16 Score=14.96 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=35.9
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++++.+.+--||...|.---..+|-|..+.+. .-...+...|+.|.+.++|..|+..+.
T Consensus 35 ~NL~~~~te~dL~~~l~~~Fs~~G~I~~v~i~--~~~~~kG~aFV~F~~~e~A~~Ai~~l~ 93 (127)
T 2a3j_A 35 TNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQ 93 (127)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHST
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC--CCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 69999999999999999983145420002311--234557508999899999999999848
No 206
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=28.92 E-value=23 Score=13.96 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=31.6
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 01332232223332234654543101279940467-54432100001352689999975
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
..|.+.+.-+|..+| ..+|-|..+.+...+. .......++.|.+.++|..++..
T Consensus 10 nlp~~~te~~l~~~f----~~~G~i~~~~~~~~~~t~~~~~~~fv~f~~~~~a~~a~~~ 64 (167)
T 2cjk_A 10 GLNWDTTEDNLREYF----GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp SCCTTCCHHHHHHHH----TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHH----HHHCCEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 989989799999999----8519888998504788701047269999369999999998
No 207
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, protein structure initiative; 1.70A {Neisseria meningitidis MC58} SCOP: d.145.1.4
Probab=28.59 E-value=13 Score=15.65 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 77421123734551144200222210012322234433432111311222123
Q gi|254780761|r 100 RIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 100 ~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
.|..+ .+.+..|.+.+.+.++++.+. .-+| ...+.|||||+-..
T Consensus 11 ~i~~~--~~~~~~v~G~~~l~dl~~~~~---~~l~----~~e~~Tl~G~i~~~ 54 (91)
T 2pli_A 11 NIHAV--SSERWRIHAATEIEDINTFFG---TEYS----SEEADTIGGLVIQE 54 (91)
T ss_dssp SEEEE--ETTEEEEETTCBHHHHHHHHC---CCCC----CSSCCBHHHHHHHH
T ss_pred CEEEE--CCCEEEEEEECCHHHHHHHHC---CCCC----CCCCHHHHHHHHHH
T ss_conf 81896--799899983079999999869---8998----55324099999998
No 208
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=28.12 E-value=23 Score=14.01 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 233322346545431012799404675443210000135268999997510
Q gi|254780761|r 195 DIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 195 dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+|..+| +.+|-|..+.+.- .....+.++++.|.+.++|..|+..+.
T Consensus 37 ~L~~~F----~~~G~i~~v~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~ln 82 (105)
T 2nlw_A 37 VIHKIF----SKFGKITNDFYPE-EDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp HHHHHH----GGGSCEEEEECCC-BTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred HHHHHH----HHCCCEEEEEEEC-CCCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 999998----6049889999989-999855589999899999999999848
No 209
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=27.52 E-value=2 Score=20.66 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=47.6
Q ss_pred HCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEEC-CCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 729829997588777654010488866999763002774211237345511-4420022221001232223443
Q gi|254780761|r 64 ETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVD-AGINLFNVQKIAEKNHRLFPLS 136 (473)
Q Consensus 64 ~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~ve-aGv~~~~l~~~l~~~g~~~p~~ 136 (473)
.|...++||+..+-++ ...|++.+.-=..+|.||..-|-.=+.-.++.|| ++-....+.+.|++.|+.|.|-
T Consensus 9 ~~~~~~~~~~~~~tIy-vVTPTY~R~~Q~a~LtRLa~TL~lVp~L~WIVVEDa~~~t~~v~~lL~~sGl~y~HL 81 (281)
T 3cu0_A 9 HHSSGLVPRGSHMTIY-VVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHL 81 (281)
T ss_dssp ------------CEEE-EEEEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSSSCCHHHHHHHHHHCSEEEEE
T ss_pred CCCCCCEECCCCCEEE-EECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 3223410069986799-989998760578899999889860898149999689999999999999739965862
No 210
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=27.39 E-value=12 Score=15.80 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHH
Q ss_conf 332232223332234654543101279940467-544321000013526899
Q gi|254780761|r 188 IKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQAL 238 (473)
Q Consensus 188 ~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~ 238 (473)
+.+.+--+|..+| ..+|=|+++.+..-|. -..+.++|+.|.+.+++.
T Consensus 15 ~~~~te~~Lk~~F----s~FG~I~~v~iv~D~~TG~srG~gFV~F~~~e~a~ 62 (136)
T 2j8a_A 15 TTNIQDISIKNYF----KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKI 62 (136)
T ss_dssp CCCCCHHHHHHHH----HTTSCCSEEEEEECTTTCCEEEEEEEECC------
T ss_pred CCCCCHHHHHHHH----HCCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCH
T ss_conf 9999999999997----45898448998787999975469999981445310
No 211
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=27.38 E-value=25 Score=13.79 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=34.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..+...+--+|.++| ..+|-|.++.+-.-+. ...+..+++.|.+.++|..++..+.
T Consensus 101 nL~~~~~e~~l~~~F----~~~G~V~~v~i~~d~~~~~~kg~~fV~f~~~~~a~~Al~~l~ 157 (172)
T 2g4b_A 101 GLPNYLNDDQVKELL----TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 157 (172)
T ss_dssp CCCTTCCHHHHHHHH----HTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHH----HHCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 666788699998788----654877434677753788714559999889999999999829
No 212
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.07 E-value=26 Score=13.64 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=18.5
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 21123734551144200222210012322
Q gi|254780761|r 103 DIDLRSNTIAVDAGINLFNVQKIAEKNHR 131 (473)
Q Consensus 103 ~id~~~~~v~veaGv~~~~l~~~l~~~g~ 131 (473)
.||..+.+++|+.-+...++.+.+++.||
T Consensus 50 ~Vdl~~~~v~V~~~~~~~~I~~~I~~~Gy 78 (98)
T 2crl_A 50 EVHLEDQMVLVHTTLPSQEVQALLEGTGR 78 (98)
T ss_dssp EEETTTTEEEEEESSCHHHHHHHHHTTTS
T ss_pred EEECCCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf 99888999999873999999999998599
No 213
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=25.82 E-value=26 Score=13.61 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=25.1
Q ss_pred CCCCCCCCEEEECCCHHHHHHH-HHHHHHCCCCEEEECC
Q ss_conf 3676687589954998999999-9999872982999758
Q gi|254780761|r 37 KIYHGTSPLVLLPSCTHEVSQI-LKLATETNTSITPQGG 74 (473)
Q Consensus 37 ~~~~~~p~~Vv~P~~~~ev~~i-v~~a~~~~i~v~prGg 74 (473)
..|+-.| +|+.-++..--.++ +.+|.+++|||+-|-.
T Consensus 38 ~lw~~~p-~vviG~~Q~~~~Evn~~~~~~~gi~vvRR~t 75 (347)
T 2e5a_A 38 FLWRNSP-TVVIGRHQNPWQECNLNLMREEGVKLARRRS 75 (347)
T ss_dssp EEECCSS-EEEECTTCCHHHHSCHHHHHTTTCEEEECSS
T ss_pred EEEECCC-EEEECCCCCHHHHHCHHHHHHCCCCEEEEEC
T ss_conf 9970799-8998999880566399999876994899826
No 214
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.15 E-value=27 Score=13.53 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=33.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 201332232223332234654543101279940467-5443210000135268999997
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
++++.+.+--||..+|- -+|++.-..++.... ...+.++++.|.+.++|.+++.
T Consensus 21 ~nlp~~~te~~l~~~F~----~~g~~~~~~~~~~~~~~~~~G~afV~f~~~~~a~~~~~ 75 (104)
T 1wi8_A 21 GNLPYDVTEESIKEFFR----GLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75 (104)
T ss_dssp ESCCSSCCHHHHHHHTT----TSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHG
T ss_pred ECCCCCCCHHHHHHHHH----HHCCCEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 19998687999999999----70557068888625678867717999899999999997
No 215
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=24.65 E-value=28 Score=13.47 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 4998999999999987298299975
Q gi|254780761|r 49 PSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 49 P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
|...+-+.++..+|.++++|++-.-
T Consensus 123 ~~~~~K~~r~~~lA~~~~lP~I~l~ 147 (587)
T 1pix_A 123 PGQAECLLRASDTAKTLHVPLVYVL 147 (587)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7898999999999998299989995
No 216
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=24.06 E-value=28 Score=13.40 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCC
Q ss_conf 002774211237345511442002222100123222
Q gi|254780761|r 97 RMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRL 132 (473)
Q Consensus 97 ~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~ 132 (473)
+|+|+-.....--++.|++|+.+.-.--+|.+.|+-
T Consensus 7 ~~~~~~~m~~~~DvvIIGaGi~Gls~A~~La~~G~~ 42 (382)
T 1ryi_A 7 HMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKN 42 (382)
T ss_dssp -------CCSEEEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 544687538758999999329999999999978993
No 217
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=24.02 E-value=29 Score=13.40 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=31.4
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC--CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 201332232223332234654543101279940467--544321000013526899999
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY--RTGKQVAFIAVNSLEQALQLL 241 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~--p~~~~~~~~~f~~~~~a~~~~ 241 (473)
++++.+.+--||..+|- .+|+ +++.+-..+. -..+.++++.|.+.++|.+++
T Consensus 25 ~nLp~~~te~~l~~~f~----~~g~-~~~~~~~~~~~~~~~kG~afV~f~~~e~a~~a~ 78 (100)
T 2j76_E 25 GNLPYDVTEESIKEFFR----GLNI-SAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp SCCSSCCSSSHHHHHSC----SSCE-EEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH----CCCE-EEEEEEEECCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 38998588999999975----1484-899999727545367870799989999999999
No 218
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=22.45 E-value=31 Score=13.21 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=36.4
Q ss_pred EC-CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01-3322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KL-IKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~-~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+ |...+--+|..+| ..+|-|.++.+ .+. .+..+++.|.+.++|..++..+.
T Consensus 41 nL~P~~vte~~L~~~F----~~fG~V~~v~i--~~~--~kg~afV~f~~~~~A~~Ai~~ln 93 (229)
T 2adc_A 41 NLNPERVTPQSLFILF----GVYGDVQRVKI--LFN--KKENALVQMADGNQAQLAMSHLN 93 (229)
T ss_dssp SCCTTTCCHHHHHHHH----HHHTCEEEEEE--CCT--TSCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHH----HHCCCCCEEEE--CCC--CCCEEEEEECCHHHHHHHHHHHC
T ss_conf 8983648999999999----86599666665--279--99789999795899999999868
No 219
>1di6_A MOGA, molybdenum cofactor biosythetic enzyme; MOCO, MOCO biosynthesis, gephyrin, unknown function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=22.45 E-value=31 Score=13.21 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHH-HHHHCCCCEEEECCCCCCC
Q ss_conf 8995499899999999-9987298299975887776
Q gi|254780761|r 45 LVLLPSCTHEVSQILK-LATETNTSITPQGGNTGLV 79 (473)
Q Consensus 45 ~Vv~P~~~~ev~~iv~-~a~~~~i~v~prGggt~~~ 79 (473)
..+.|.+.+++.+.+. ++.+.++-++.-+||||..
T Consensus 44 ~~iV~Dd~~~I~~~l~~~~~~~~~dlIiTtGGTG~~ 79 (195)
T 1di6_A 44 TRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPA 79 (195)
T ss_dssp EEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 788688679999999999854595499825877777
No 220
>1cvj_A Polyadenylate binding protein 1; RRM, protein-RNA complex, gene regulation-RNA complex; HET: A; 2.60A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2k8g_A
Probab=22.11 E-value=31 Score=13.16 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=32.2
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 013322322233322346545431012799404675-4432100001352689999975
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
.+|.+.+--+|..+| ..+|-|..+.+...+.. ..+...++.|.+.+++..++..
T Consensus 17 nLp~~~te~~l~~~F----~~~G~i~~v~i~~d~~t~~~~g~afv~f~~~~~a~~a~~~ 71 (190)
T 1cvj_A 17 DLHPDVTEAMLYEKF----SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 (190)
T ss_dssp SCCTTCCHHHHHHHH----GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHH----HHHCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 899989799999999----8739889988401268897254369997999999999997
No 221
>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Probab=22.08 E-value=25 Score=13.81 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCCCCEEE
Q ss_conf 44332346665302112201332232223332-2346545431012
Q gi|254780761|r 168 CLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDL-LIGSEGTLGIITG 212 (473)
Q Consensus 168 v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l-~~GseGtlGiITe 212 (473)
-+.+++|+|++.+++.+ +...+ +-|++|-+||.-.
T Consensus 15 ~l~l~ivtP~~~i~~~~----------~V~~V~lp~~~G~~GILp~ 50 (146)
T 2ck3_H 15 QMSFTFASPTQVFFNSA----------NVRQVDVPTQTGAFGILAA 50 (146)
T ss_dssp --CCCEECSSCEEEC---------------CCBCCC----------
T ss_pred EEEEEEECCCCEEECCC----------CEEEEEEECCCCCEEECCC
T ss_conf 58999997982067788----------5899999669568254489
No 222
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=22.07 E-value=31 Score=13.16 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=12.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89954998999999999987298299
Q gi|254780761|r 45 LVLLPSCTHEVSQILKLATETNTSIT 70 (473)
Q Consensus 45 ~Vv~P~~~~ev~~iv~~a~~~~i~v~ 70 (473)
.|+-=++-+.-.+|+++|.+++||++
T Consensus 19 ~VvAkG~g~~A~~I~~~A~~~gIPiv 44 (93)
T 2vt1_B 19 FISLIETNQCALAVRKYANEVGIPTV 44 (93)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEE
T ss_conf 99985185999999999998599888
No 223
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=21.76 E-value=27 Score=13.56 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=33.8
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.+++.+.+--||..+| ..+|.++... +.. ....+..+++.|.+.++|..|++.+.
T Consensus 34 ~NLp~~~t~~dl~~~f----~~~g~~v~~~-~~~-~~~~~G~afV~f~~~e~A~~Ai~~l~ 88 (111)
T 2jvr_A 34 KNLPEGCSWQDLKDLA----RENSLETTFS-SVN-TRDFDGTGALEFPSEEILVEALERLN 88 (111)
T ss_dssp ECSSCCCCHHHHHHHH----HHHTCCCSEE-ECS-SCSSSCCEEEEESSHHHHHHHHHHTT
T ss_pred ECCCCCCCHHHHHHHH----HHCCCCEEEE-ECC-CCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7999999999999999----8709808999-852-68978869999698899999999829
No 224
>3n4s_A Monopolin complex subunit CSM1; meiosis, rDNA, replication; HET: 1PE; 2.35A {Saccharomyces cerevisiae} PDB: 3n4r_A*
Probab=21.24 E-value=32 Score=13.05 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2235664444210013128999999999988
Q gi|254780761|r 341 QKREGRSIKHDISVPIGQIPSFLQEVKKSVS 371 (473)
Q Consensus 341 ~~~~g~~~~~Dvavp~~~l~~~~~~v~~~l~ 371 (473)
....+..+..+.+.|.++++.|+..+.+++.
T Consensus 85 ~~~LPdYL~d~itFP~~~~~qFYskv~~aL~ 115 (116)
T 3n4s_A 85 QSKLPEYLFETLSFPLSSLNQFYNKIAKSLN 115 (116)
T ss_dssp HTTSCGGGGSCEEEEGGGHHHHHHHHHHHHC
T ss_pred HHHCCHHEEEEEEEEHHHHHHHHHHHHHHHC
T ss_conf 9868456177889607778999999998744
No 225
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A*
Probab=21.19 E-value=32 Score=13.05 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=33.3
Q ss_pred EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCCCHHHHCCC
Q ss_conf 455114420022221001232223443343211131122212--356400011257
Q gi|254780761|r 110 TIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLAT--NAGGTAVLSYGN 163 (473)
Q Consensus 110 ~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~--~~~G~~s~~yG~ 163 (473)
++.++||..+.-....|+++|.-.-+ . .....+||.+-| ..+|...+.||.
T Consensus 32 viIIGaG~sGL~aA~~L~k~G~~V~v-~--Ek~~~iGG~~~t~~~~~g~~~~d~G~ 84 (397)
T 3hdq_A 32 YLIVGAGFAGSVLAERLASSGQRVLI-V--DRRPHIGGNAYDCYDDAGVLIHPYGP 84 (397)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEE-E--CSSSSSSGGGCCEECTTSCEECTTSC
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEE-E--ECCCCCCCEEEEEEECCCEEEEECCC
T ss_conf 89989718999999999858996799-9--76897706078999349859980566
No 226
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=20.99 E-value=33 Score=13.02 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHH--HHHHHHHHHHCCCCEEEECC
Q ss_conf 7898999999973384418669899877313401367668758995499899--99999999872982999758
Q gi|254780761|r 3 QLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHE--VSQILKLATETNTSITPQGG 74 (473)
Q Consensus 3 ~~~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~e--v~~iv~~a~~~~i~v~prGg 74 (473)
|..+++-..|.-.+-..++..-......+.. .+..-.|+...+..+ +..+..+|..++||+.-+.+
T Consensus 4 ~~~~~i~~~L~~a~kaGklv~G~~~v~kai~------~gkaklVilA~D~~~~~~~~i~~~c~~~~Vpv~~~~~ 71 (110)
T 3cpq_A 4 RENMDVNKAIRTAVDTGKVILGSKRTIKFVK------HGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKI 71 (110)
T ss_dssp ---CHHHHHHHHHHHHSEEEESHHHHHHHHH------TTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCS
T ss_pred CCCCCHHHHHHHHHHHCCEEECHHHHHHHHH------CCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 1016799999999994998772899999998------1997199996879989999999999975967999769
No 227
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.93 E-value=33 Score=13.01 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=27.0
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 45431012799404675443210000135268999997510
Q gi|254780761|r 205 GTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 205 GtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+.+|-|+.+.+.. +..+-..++.|.+.++|.+|+..+.
T Consensus 48 ~~~g~V~~v~~~~---~~~~G~~fV~F~~~e~A~~Ai~~ln 85 (112)
T 2dit_A 48 SKFGQIRKLLLFD---RHPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp GGTSCCSEEEEET---TCTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCEEEEECCC---CCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 7637489977047---7887279999898999999999979
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=20.85 E-value=30 Score=13.30 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=11.0
Q ss_pred EEECCCCCCCCCCCCCCCEEE
Q ss_conf 997630027742112373455
Q gi|254780761|r 92 ILSIKRMNRIRDIDLRSNTIA 112 (473)
Q Consensus 92 vld~~~mn~il~id~~~~~v~ 112 (473)
.+|..+ ++|..+|++++..+
T Consensus 65 wvDi~~-~~I~r~dp~tg~~~ 84 (326)
T 2ghs_A 65 WFNILE-RELHELHLASGRKT 84 (326)
T ss_dssp EEEGGG-TEEEEEETTTTEEE
T ss_pred EEECCC-CEEEEEECCCCEEE
T ss_conf 998789-99999989999699
Done!