HHSEARCH alignment of GI: 254780761 and SCOP domain: d1n62c2

Alignment
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=97.56  E-value=2.6e-05  Score=49.84  Aligned_cols=153  Identities=18%  Similarity=0.187  Sum_probs=91.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf             87589954998999999999987298299975887776540104888669997630027742112373455114420022
Q gi|254780761|r   42 TSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFN  121 (473)
Q Consensus        42 ~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~  121 (473)
                      .+.-..+|.|.+|..++++-.+..   ..+-+|||.+.-.--........++|+++++....|..++..+++++.+++.+
T Consensus         4 ~~f~y~~P~sl~ea~~ll~~~~~~---a~~laGGT~l~~~~~~~~~~~~~lidl~~i~el~~I~~~~~~~~iGa~~t~~~   80 (177)
T d1n62c2           4 GSFDYHRPKSIADAVALLTKLGED---ARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHA   80 (177)
T ss_dssp             CCCEEECCSSHHHHHHHHHHHGGG---EEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCEEEETTEEEEETTCBHHH
T ss_pred             CCCCEECCCCHHHHHHHHHHCCCC---CEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCHHH
T ss_conf             986463889999999999753999---76998247224325305577653346202523408963585699703454887


Q ss_pred             HHHH--CCCCCC-------CCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCC-----CCCCCC--CCCCCCEEEEE
Q ss_conf             2210--012322-------2344334321113112221235640001125733344-----433234--66653021122
Q gi|254780761|r  122 VQKI--AEKNHR-------LFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLC-----LGIEAV--LPTGDIWNGMH  185 (473)
Q Consensus       122 l~~~--l~~~g~-------~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v-----~~~~vv--~~~G~i~~~~~  185 (473)
                      +.+.  +.++.-       .+ -+|+=...+||||+|++.+..         .|++     ++.+++  .++|+  +   
T Consensus        81 ~~~~~~~~~~~p~l~~a~~~~-as~qIRn~aTiGGNi~~a~p~---------~D~~~~Llal~A~v~l~~~~G~--R---  145 (177)
T d1n62c2          81 LIGSDFLAAKLPIIRETSLLI-ADPQIRYMGTIGGNAANGDPG---------NDMPALMQCLGAAYELTGPEGA--R---  145 (177)
T ss_dssp             HHHCHHHHHHCHHHHHHHTTS-SCHHHHHHCBHHHHHHSCCTT---------CSHHHHHHHHTCEEEEEETTEE--E---
T ss_pred             HHCCHHHHHHCCHHHHHHHHC-CCHHHEEEEEEECCEECCCCC---------CHHHHHHHHHCCEEEEECCCCE--E---
T ss_conf             521076765364799996413-894276899961532014533---------3268999984031488538835--9---


Q ss_pred             ECCCCCCCCCCCCCCCCCCCC----CCCEEEEEEEECC
Q ss_conf             013322322233322346545----4310127994046
Q gi|254780761|r  186 KLIKDNSRYDIRDLLIGSEGT----LGIITGAVLRLLP  219 (473)
Q Consensus       186 ~~~~~~~G~dl~~l~~GseGt----lGiITevtlrl~p  219 (473)
                      .+       .+.++|.|.--|    --|||++.+.+-|
T Consensus       146 ~v-------pl~dF~~g~~~t~l~~~Eii~~I~iP~p~  176 (177)
T d1n62c2         146 IV-------AARDYYQGAYFTAIEPGELLTAIRIPVPP  176 (177)
T ss_dssp             EE-------EHHHHEEETTEESCCTTCEEEEEEEECCC
T ss_pred             EE-------EHHHHCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf             98-------99995056031345989769999965998


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]