BLAST/PSIBLAST alignment of GI: 254780761 and GI: 209548152 at iteration 1
>gi|209548152|ref|YP_002280069.1| FAD linked oxidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 478
>gi|209533908|gb|ACI53843.1| FAD linked oxidase domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 478
 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/470 (51%), Positives = 326/470 (69%), Gaps = 1/470 (0%)

Query: 4   LSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLAT 63
           +S +L+ RF +IVG +  L  +  ++P+L E R +YHG+SPL+L P    EVS I+KLAT
Sbjct: 6   ISTELLDRFAAIVGDKYALRGEADLAPHLVENRGLYHGSSPLLLKPGSVEEVSAIMKLAT 65

Query: 64  ETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQ 123
           ET T+I PQ GNTGLVGGQ PR  + DIILS++RMNRIRD+D  +N +  D G  L +VQ
Sbjct: 66  ETGTAIVPQTGNTGLVGGQTPRAGQSDIILSLERMNRIRDVDPVANVLVADGGAILADVQ 125

Query: 124 KIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNG 183
           K AE + RLFPLSL SE  C IGGNL+TNAGGTAVL+YGN+R LCLG+E VLPTG+IW+G
Sbjct: 126 KAAEAHGRLFPLSLGSEGSCRIGGNLSTNAGGTAVLAYGNMRQLCLGLEVVLPTGEIWDG 185

Query: 184 MHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQL 243
           + +L KDN+ YD+RDL IG+EGTLGIITGAVL+L P   G QVAF  +NS+  AL L  L
Sbjct: 186 LRRLKKDNTGYDLRDLFIGAEGTLGIITGAVLKLFPQPLGHQVAFAGLNSVADALGLFNL 245

Query: 244 SQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIAN 303
           +    G+ LT FEL+  F +++  +HI     PL    PWY+L++IS++++ E A+ + N
Sbjct: 246 ASSLCGTSLTGFELMPRFGVEITTRHIDGVRDPLQAAYPWYVLIDISTSDSAETAERMMN 305

Query: 304 TILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFL 363
            +L  GF   ++ +  + S   ++ AIW +R ++  AQK EG SIKHD+SVP+ +IP F+
Sbjct: 306 GVLEQGFAAGLVLDAAIASSVAQQQAIWHMRESMSDAQKPEGGSIKHDVSVPVSRIPHFM 365

Query: 364 QEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLS 423
            E   +V +  P  RI  FGH+GDGNIH+N+  P   ++  F+   W  +N IV+ +VL+
Sbjct: 366 AEAADAVLAAMPGARICAFGHMGDGNIHYNISQPVGADKAAFIG-RWREMNQIVHGLVLA 424

Query: 424 YGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473
           +GGSI+AEHGIGQL +  L  I    EI++M++IK  FDPA IMNPGK +
Sbjct: 425 HGGSISAEHGIGQLKRDELAAIRPAIEIELMRRIKRAFDPANIMNPGKVV 474