RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] (473 letters) >d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 294 Score = 144 bits (363), Expect = 2e-35 Identities = 50/322 (15%), Positives = 96/322 (29%), Gaps = 65/322 (20%) Query: 161 YGNIRHLCLGIEAVLPT-GDIWNGMHKL---IKDNSRYDIRDLLIGSEGTLGIITGAVLR 216 IR L LP G+ MH+ I + D L+I GT + L+ Sbjct: 16 LTEIRRHILANFENLPVAGEY---MHRDIYDIAEKYGKDTF-LMIDKLGTDKMPFFFNLK 71 Query: 217 LLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSP 276 ++V F + ++A+Q L H+P Sbjct: 72 GRTDAMLEKVKFFRPHFTDRAMQ---------------------KFGHLFPSHLPPRMKN 110 Query: 277 LSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN 336 D ++LL+++ E + + + K+ ++ + + EE + + R Sbjct: 111 WRDKYEHHLLLKMAGDGVGEAKSWLVD------YFKQAEGDFFVCT-PEEGSKAFLHRFA 163 Query: 337 I--------PLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDG 388 + + DI++ + + S +GH Sbjct: 164 AAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDS---QLVHKLYYGHFMCY 220 Query: 389 NIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEP 448 H + + + + ++ G AEH +G L+K Sbjct: 221 VFHQDYIVKKGVDVHA--------LKEQMLELLQQRGAQYPAEHNVGHLYKA-------- 264 Query: 449 TEIKIMKKIKEIFDPAGIMNPG 470 + ++K DP MNPG Sbjct: 265 --PETLQKFYRENDPTNSMNPG 284 >d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 287 Score = 143 bits (360), Expect = 4e-35 Identities = 36/290 (12%), Positives = 72/290 (24%), Gaps = 32/290 (11%) Query: 194 YDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLT 253 Y + + +G L + L + V I L+ A+ S + Sbjct: 3 YQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGD------KRSYSS 56 Query: 254 AFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKK 313 E +S+ L + K + W + E + R + F+ Sbjct: 57 RTEPLSDEELDKIAKQ--------LNLGRWNFYGALYGPEPIRRVLW---ETIKDAFSAI 105 Query: 314 ILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRS-----------IKHDISVPIG-QIPS 361 ++ P E + + + + I+ G Sbjct: 106 PGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMM 165 Query: 362 FLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVV 421 KK +G +H V ++ + + Sbjct: 166 QYAVTKKRCQE--AGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKR-KVQWLMRTLIDDC 222 Query: 422 LSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471 + G H + ++ + +K DP GI+ PGK Sbjct: 223 AANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGK 272 >d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Score = 107 bits (268), Expect = 2e-24 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 11/204 (5%) Query: 21 ILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTS---ITPQGGNTG 77 + D + T+ I VL PS T ++ +L A T I +G Sbjct: 8 LRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHS 67 Query: 78 LVGGQIPRKNRKDIILSIKRMNRIRDIDLR--SNTIAVDAGINLFNVQKIAEKNHRLFPL 135 L+G + S+ I++ + +V + + P Sbjct: 68 LMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGV-APR 126 Query: 136 SLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYD 195 S Y +GG L+ +G L ++ + G++ D Sbjct: 127 SWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT-----CSKQLNAD 181 Query: 196 IRDLLIGSEGTLGIITGAVLRLLP 219 + D ++G G G+IT A + + P Sbjct: 182 LFDAVLGGLGQFGVITRARIAVEP 205 >d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Score = 104 bits (260), Expect = 1e-23 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%) Query: 8 LIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNT 67 + +VGS +L D + Y R G + V+ P E+ ++LK + Sbjct: 4 FLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADK 62 Query: 68 SITPQGGNTGLVGGQIP---RKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQK 124 I Q NTGL G P +R +I+S R++++ + +A + Sbjct: 63 IILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLGKGEQVLAYPGTTLYSLEKA 122 Query: 125 IAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIW 181 + + S + G + N+GG+ V + + G + Sbjct: 123 LKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEM-SLFARINEDGKLT 178 >d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 279 Score = 103 bits (257), Expect = 3e-23 Identities = 26/278 (9%), Positives = 65/278 (23%), Gaps = 47/278 (16%) Query: 226 VAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTF----SPLS--- 278 V F + + + L+ + + ++ + + S + Sbjct: 8 VIFEDEADIVEIVDALRPLRM-SNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSV 66 Query: 279 --------DTSPWYILLEISST-----ETLERAQNIANTILATGFNKKILTEWILPSLDE 325 W + + T + ++ + + Sbjct: 67 IKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRI--------VTQEEAG 118 Query: 326 EKNAIWCLRNNI----------PLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFP 375 + + + G S+ S ++ + Sbjct: 119 DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEA--RGSECKKQAAMAKRVLH 176 Query: 376 K--TRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHG 433 K + ++H + D E N ++ G A + Sbjct: 177 KYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELL-DEFEKEGY---AVYR 232 Query: 434 IGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471 + + R+ P + K+ IK DP I+ PG+ Sbjct: 233 VNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGR 270 >d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Score = 101 bits (252), Expect = 1e-22 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 18/197 (9%) Query: 36 RKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSI 95 K + V P +V ++ A E + I P+G G + + + ++ Sbjct: 24 SKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILA 83 Query: 96 KRMNRIRDIDLRSNTIAVDAGINLF---NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152 M + I + + + H L +LP+ IGG LA N Sbjct: 84 DTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVN 143 Query: 153 AGGTAVLS----------YGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIG 202 A G A+ + YG++ +L + AV+ G + ++ R D R + Sbjct: 144 AHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYA-----LETYQRNDPRITPLL 198 Query: 203 SEGTLGIITGAVLRLLP 219 + +T ++ P Sbjct: 199 TNLGRCFLTSVTMQAGP 215 >d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Score = 97.1 bits (240), Expect = 3e-21 Identities = 51/251 (20%), Positives = 86/251 (34%), Gaps = 40/251 (15%) Query: 7 DLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPL------------VLLPSCTHE 54 + IQ I IVGSE + K H P ++ P + Sbjct: 18 EFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVAD 77 Query: 55 VSQILKLATETNTSITPQGGNTG-LVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAV 113 V I+ LA + + + P GG PR + ++ K MNR+ ++++ V Sbjct: 78 VQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVV 137 Query: 114 DAGINLFNVQKIAEKNHRLFPLSLPSEK--YCHIGGNLATNAGGTAVLSYGNIRHLCLGI 171 + G+ ++ E N+ L L + GN G YG+ + G+ Sbjct: 138 EPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYT--PYGDHWMMHSGM 195 Query: 172 EAVLPTGDI-------------WNGMHKLIKDNSRYDIRDLL----------IGSEGTLG 208 E VL G++ M +D I L + S+ +G Sbjct: 196 EVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMG 255 Query: 209 IITGAVLRLLP 219 I+T + L+P Sbjct: 256 IVTKIGIWLMP 266 >d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Score = 89.8 bits (221), Expect = 4e-19 Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 10/221 (4%) Query: 8 LIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSP--LVLLPSCTHEVSQILKLATET 65 +Q+F +++G + +L + + PY + + + + +V ++K+ E Sbjct: 15 AVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEH 74 Query: 66 NTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125 I G R +IL +K+MN+I ID V+ G+ + Sbjct: 75 KIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDY 134 Query: 126 AEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMH 185 + + L + S G T G YG + G+E VL GD++ Sbjct: 135 I-QENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGM 193 Query: 186 KLIKDNSRYDIRDLLIG-------SEGTLGIITGAVLRLLP 219 + ++ + I G ++ GI T L+P Sbjct: 194 GGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMP 234 >d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 194 Score = 49.5 bits (117), Expect = 6e-07 Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 25/215 (11%) Query: 7 DLIQRFISIVGSEGILDDQKLISPYLTEERKIYH--GTSPLVLLPSCTHEVSQILKLATE 64 D+ Q ++ +E I D+ L Y G + + P+ EV ++K A + Sbjct: 3 DIYQALQQLIPNEKIKVDEPL-KRYTY-----TKTGGNADFYITPTKNEEVQAVVKYAYQ 56 Query: 65 TNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQK 124 +T G + ++ + + + + + I++ + I +G + +V + Sbjct: 57 NEIPVTYLGNGSNIIIREGGIRGI------VISLLSLDHIEVSDDAIIAGSGAAIIDVSR 110 Query: 125 IAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGM 184 +A L L IGG + NAG G ++ V G + Sbjct: 111 VARDYA-LTGLEFACGIPGSIGGAVYMNAGAYG----GEVKDCIDYALCVNEQGSL---- 161 Query: 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP 219 KL D R+ +I E ++ A L P Sbjct: 162 IKLTTKELELDYRNSIIQKEHL--VVLEAAFTLAP 194 >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 Score = 27.9 bits (60), Expect = 1.9 Identities = 10/111 (9%), Positives = 28/111 (25%), Gaps = 3/111 (2%) Query: 89 KDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGN 148 K + + + +++I L NTI +A L + L + Sbjct: 21 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWL---SENIASKKDLEIAEFSDIFTGRVKDE 77 Query: 149 LATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDL 199 + + + + + + ++ + L Sbjct: 78 IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128 >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Score = 26.7 bits (59), Expect = 4.5 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 58 ILKLATETNTSITPQGGNTGLVGGQI---PRKNRK---DIILSIKRMNRIRDIDLRSNTI 111 + A + + + G +G I KN DI+ ++ +N + I Sbjct: 212 VYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMI 271 Query: 112 AVDAGI 117 + G+ Sbjct: 272 ILGGGV 277 >d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 90 Score = 26.3 bits (58), Expect = 5.2 Identities = 6/29 (20%), Positives = 14/29 (48%) Query: 363 LQEVKKSVSSIFPKTRIGLFGHIGDGNIH 391 ++E+K+ I L+G + +G+ Sbjct: 1 MKEIKEITKKDVQDAEIYLYGSVVEGDYS 29 >d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 347 Score = 26.1 bits (57), Expect = 5.5 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Query: 229 IAVNS--LEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPW 283 I V S + Q LQ+ LSQK + F L ++FI + V+ +P + S + Sbjct: 35 ILVQSTGMAQWLQM-TLSQKFGIAANIDFPLPASFIWDMFVRVLPE----IPKESAF 86 >d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]} Length = 158 Score = 26.2 bits (57), Expect = 6.2 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 335 NNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKK-SVSSIFPKT 377 N I + ++R +++SVP IPS Q+ ++ S S ++PKT Sbjct: 90 NGISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKT 133 >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 221 Score = 25.8 bits (56), Expect = 7.1 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%) Query: 80 GGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAE 127 GGQ I + + ++ D I VD G+ N ++ E Sbjct: 146 GGQSFIPEVLPKI---RALRQMCDERGLDPWIEVDGGLKPNNTWQVLE 190 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.138 0.401 Gapped Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,741,036 Number of extensions: 81849 Number of successful extensions: 236 Number of sequences better than 10.0: 1 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 17 Length of query: 473 Length of database: 2,407,596 Length adjustment: 89 Effective length of query: 384 Effective length of database: 1,185,626 Effective search space: 455280384 Effective search space used: 455280384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.7 bits)