RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780761|ref|YP_003065174.1| probable FAD-dependent
oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
(473 letters)
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 294
Score = 144 bits (363), Expect = 2e-35
Identities = 50/322 (15%), Positives = 96/322 (29%), Gaps = 65/322 (20%)
Query: 161 YGNIRHLCLGIEAVLPT-GDIWNGMHKL---IKDNSRYDIRDLLIGSEGTLGIITGAVLR 216
IR L LP G+ MH+ I + D L+I GT + L+
Sbjct: 16 LTEIRRHILANFENLPVAGEY---MHRDIYDIAEKYGKDTF-LMIDKLGTDKMPFFFNLK 71
Query: 217 LLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSP 276
++V F + ++A+Q L H+P
Sbjct: 72 GRTDAMLEKVKFFRPHFTDRAMQ---------------------KFGHLFPSHLPPRMKN 110
Query: 277 LSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN 336
D ++LL+++ E + + + K+ ++ + + EE + + R
Sbjct: 111 WRDKYEHHLLLKMAGDGVGEAKSWLVD------YFKQAEGDFFVCT-PEEGSKAFLHRFA 163
Query: 337 I--------PLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDG 388
+ + DI++ + + S +GH
Sbjct: 164 AAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDS---QLVHKLYYGHFMCY 220
Query: 389 NIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEP 448
H + + + + ++ G AEH +G L+K
Sbjct: 221 VFHQDYIVKKGVDVHA--------LKEQMLELLQQRGAQYPAEHNVGHLYKA-------- 264
Query: 449 TEIKIMKKIKEIFDPAGIMNPG 470
+ ++K DP MNPG
Sbjct: 265 --PETLQKFYRENDPTNSMNPG 284
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 287
Score = 143 bits (360), Expect = 4e-35
Identities = 36/290 (12%), Positives = 72/290 (24%), Gaps = 32/290 (11%)
Query: 194 YDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLT 253
Y + + +G L + L + V I L+ A+ S +
Sbjct: 3 YQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGD------KRSYSS 56
Query: 254 AFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKK 313
E +S+ L + K + W + E + R + F+
Sbjct: 57 RTEPLSDEELDKIAKQ--------LNLGRWNFYGALYGPEPIRRVLW---ETIKDAFSAI 105
Query: 314 ILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRS-----------IKHDISVPIG-QIPS 361
++ P E + + + + I+ G
Sbjct: 106 PGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMM 165
Query: 362 FLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVV 421
KK +G +H V ++ + +
Sbjct: 166 QYAVTKKRCQE--AGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKR-KVQWLMRTLIDDC 222
Query: 422 LSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471
+ G H + ++ + +K DP GI+ PGK
Sbjct: 223 AANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGK 272
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 206
Score = 107 bits (268), Expect = 2e-24
Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 11/204 (5%)
Query: 21 ILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTS---ITPQGGNTG 77
+ D + T+ I VL PS T ++ +L A T I +G
Sbjct: 8 LRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHS 67
Query: 78 LVGGQIPRKNRKDIILSIKRMNRIRDIDLR--SNTIAVDAGINLFNVQKIAEKNHRLFPL 135
L+G + S+ I++ + +V + + P
Sbjct: 68 LMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGV-APR 126
Query: 136 SLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYD 195
S Y +GG L+ +G L ++ + G++ D
Sbjct: 127 SWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT-----CSKQLNAD 181
Query: 196 IRDLLIGSEGTLGIITGAVLRLLP 219
+ D ++G G G+IT A + + P
Sbjct: 182 LFDAVLGGLGQFGVITRARIAVEP 205
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 104 bits (260), Expect = 1e-23
Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 8 LIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNT 67
+ +VGS +L D + Y R G + V+ P E+ ++LK +
Sbjct: 4 FLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADK 62
Query: 68 SITPQGGNTGLVGGQIP---RKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQK 124
I Q NTGL G P +R +I+S R++++ + +A +
Sbjct: 63 IILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLGKGEQVLAYPGTTLYSLEKA 122
Query: 125 IAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIW 181
+ + S + G + N+GG+ V + + G +
Sbjct: 123 LKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEM-SLFARINEDGKLT 178
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 279
Score = 103 bits (257), Expect = 3e-23
Identities = 26/278 (9%), Positives = 65/278 (23%), Gaps = 47/278 (16%)
Query: 226 VAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTF----SPLS--- 278
V F + + + L+ + + ++ + + S +
Sbjct: 8 VIFEDEADIVEIVDALRPLRM-SNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSV 66
Query: 279 --------DTSPWYILLEISST-----ETLERAQNIANTILATGFNKKILTEWILPSLDE 325
W + + T + ++ + +
Sbjct: 67 IKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRI--------VTQEEAG 118
Query: 326 EKNAIWCLRNNI----------PLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFP 375
+ + + G S+ S ++ +
Sbjct: 119 DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEA--RGSECKKQAAMAKRVLH 176
Query: 376 K--TRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHG 433
K + ++H + D E N ++ G A +
Sbjct: 177 KYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELL-DEFEKEGY---AVYR 232
Query: 434 IGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471
+ + R+ P + K+ IK DP I+ PG+
Sbjct: 233 VNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGR 270
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 216
Score = 101 bits (252), Expect = 1e-22
Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 18/197 (9%)
Query: 36 RKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSI 95
K + V P +V ++ A E + I P+G G + + + ++
Sbjct: 24 SKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILA 83
Query: 96 KRMNRIRDIDLRSNTIAVDAGINLF---NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATN 152
M + I + + + H L +LP+ IGG LA N
Sbjct: 84 DTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVN 143
Query: 153 AGGTAVLS----------YGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIG 202
A G A+ + YG++ +L + AV+ G + ++ R D R +
Sbjct: 144 AHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYA-----LETYQRNDPRITPLL 198
Query: 203 SEGTLGIITGAVLRLLP 219
+ +T ++ P
Sbjct: 199 TNLGRCFLTSVTMQAGP 215
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 268
Score = 97.1 bits (240), Expect = 3e-21
Identities = 51/251 (20%), Positives = 86/251 (34%), Gaps = 40/251 (15%)
Query: 7 DLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPL------------VLLPSCTHE 54
+ IQ I IVGSE + K H P ++ P +
Sbjct: 18 EFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVAD 77
Query: 55 VSQILKLATETNTSITPQGGNTG-LVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAV 113
V I+ LA + + + P GG PR + ++ K MNR+ ++++ V
Sbjct: 78 VQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVV 137
Query: 114 DAGINLFNVQKIAEKNHRLFPLSLPSEK--YCHIGGNLATNAGGTAVLSYGNIRHLCLGI 171
+ G+ ++ E N+ L L + GN G YG+ + G+
Sbjct: 138 EPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYT--PYGDHWMMHSGM 195
Query: 172 EAVLPTGDI-------------WNGMHKLIKDNSRYDIRDLL----------IGSEGTLG 208
E VL G++ M +D I L + S+ +G
Sbjct: 196 EVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMG 255
Query: 209 IITGAVLRLLP 219
I+T + L+P
Sbjct: 256 IVTKIGIWLMP 266
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 236
Score = 89.8 bits (221), Expect = 4e-19
Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 10/221 (4%)
Query: 8 LIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSP--LVLLPSCTHEVSQILKLATET 65
+Q+F +++G + +L + + PY + + + + +V ++K+ E
Sbjct: 15 AVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEH 74
Query: 66 NTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125
I G R +IL +K+MN+I ID V+ G+ +
Sbjct: 75 KIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDY 134
Query: 126 AEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMH 185
+ + L + S G T G YG + G+E VL GD++
Sbjct: 135 I-QENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGM 193
Query: 186 KLIKDNSRYDIRDLLIG-------SEGTLGIITGAVLRLLP 219
+ ++ + I G ++ GI T L+P
Sbjct: 194 GGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMP 234
>d1hska1 d.145.1.2 (A:15-208) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase
(MurB), N-terminal domain {Staphylococcus aureus [TaxId:
1280]}
Length = 194
Score = 49.5 bits (117), Expect = 6e-07
Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 25/215 (11%)
Query: 7 DLIQRFISIVGSEGILDDQKLISPYLTEERKIYH--GTSPLVLLPSCTHEVSQILKLATE 64
D+ Q ++ +E I D+ L Y G + + P+ EV ++K A +
Sbjct: 3 DIYQALQQLIPNEKIKVDEPL-KRYTY-----TKTGGNADFYITPTKNEEVQAVVKYAYQ 56
Query: 65 TNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQK 124
+T G + ++ + + + + + I++ + I +G + +V +
Sbjct: 57 NEIPVTYLGNGSNIIIREGGIRGI------VISLLSLDHIEVSDDAIIAGSGAAIIDVSR 110
Query: 125 IAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGM 184
+A L L IGG + NAG G ++ V G +
Sbjct: 111 VARDYA-LTGLEFACGIPGSIGGAVYMNAGAYG----GEVKDCIDYALCVNEQGSL---- 161
Query: 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP 219
KL D R+ +I E ++ A L P
Sbjct: 162 IKLTTKELELDYRNSIIQKEHL--VVLEAAFTLAP 194
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 27.9 bits (60), Expect = 1.9
Identities = 10/111 (9%), Positives = 28/111 (25%), Gaps = 3/111 (2%)
Query: 89 KDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGN 148
K + + + +++I L NTI +A L + L +
Sbjct: 21 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWL---SENIASKKDLEIAEFSDIFTGRVKDE 77
Query: 149 LATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDL 199
+ + + + + + ++ + L
Sbjct: 78 IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 361
Score = 26.7 bits (59), Expect = 4.5
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 58 ILKLATETNTSITPQGGNTGLVGGQI---PRKNRK---DIILSIKRMNRIRDIDLRSNTI 111
+ A + + + G +G I KN DI+ ++ +N + I
Sbjct: 212 VYYWAQKNHIPVFSPALTDGSLGDMIFFHSYKNPGLVLDIVEDLRLINTQAIFAKCTGMI 271
Query: 112 AVDAGI 117
+ G+
Sbjct: 272 ILGGGV 277
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 90
Score = 26.3 bits (58), Expect = 5.2
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 363 LQEVKKSVSSIFPKTRIGLFGHIGDGNIH 391
++E+K+ I L+G + +G+
Sbjct: 1 MKEIKEITKKDVQDAEIYLYGSVVEGDYS 29
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 347
Score = 26.1 bits (57), Expect = 5.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 229 IAVNS--LEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPW 283
I V S + Q LQ+ LSQK + F L ++FI + V+ +P + S +
Sbjct: 35 ILVQSTGMAQWLQM-TLSQKFGIAANIDFPLPASFIWDMFVRVLPE----IPKESAF 86
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4
{Caenorhabditis elegans [TaxId: 6239]}
Length = 158
Score = 26.2 bits (57), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 335 NNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKK-SVSSIFPKT 377
N I + ++R +++SVP IPS Q+ ++ S S ++PKT
Sbjct: 90 NGISILEQRLLEIGNNNVSVPERHIPSHFQKFRRSSASEMYPKT 133
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 25.8 bits (56), Expect = 7.1
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 80 GGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAE 127
GGQ I + + ++ D I VD G+ N ++ E
Sbjct: 146 GGQSFIPEVLPKI---RALRQMCDERGLDPWIEVDGGLKPNNTWQVLE 190
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,741,036
Number of extensions: 81849
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 17
Length of query: 473
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,185,626
Effective search space: 455280384
Effective search space used: 455280384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)