BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] (473 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/473 (100%), Positives = 473/473 (100%) Query: 1 MNQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILK 60 MNQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILK Sbjct: 1 MNQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILK 60 Query: 61 LATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLF 120 LATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLF Sbjct: 61 LATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLF 120 Query: 121 NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDI 180 NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDI Sbjct: 121 NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDI 180 Query: 181 WNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQL 240 WNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQL Sbjct: 181 WNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQL 240 Query: 241 LQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQN 300 LQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQN Sbjct: 241 LQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQN 300 Query: 301 IANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIP 360 IANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIP Sbjct: 301 IANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIP 360 Query: 361 SFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSV 420 SFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSV Sbjct: 361 SFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSV 420 Query: 421 VLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473 VLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL Sbjct: 421 VLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473 >gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 1576 Score = 26.6 bits (57), Expect = 0.87, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 21/44 (47%) Query: 54 EVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR 97 EV +++ N I P G G ++P + R+D I+ I R Sbjct: 801 EVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGR 844 >gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 133 Score = 25.8 bits (55), Expect = 1.6, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 276 PL-SDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWI--LPSLDEEKN 328 PL +D +Y+L+E+ + + A+ AN+ L FN++ L + LP + + K+ Sbjct: 70 PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125 >gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62] Length = 551 Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 149 LATNAGGTAVLSYGNIRHLCLG 170 LA AGG AVL G++ LG Sbjct: 369 LAKLAGGVAVLEVGDVTEAALG 390 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.138 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,280 Number of Sequences: 1233 Number of extensions: 13885 Number of successful extensions: 31 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 5 length of query: 473 length of database: 328,796 effective HSP length: 77 effective length of query: 396 effective length of database: 233,855 effective search space: 92606580 effective search space used: 92606580 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)