BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780761|ref|YP_003065174.1| probable FAD-dependent
oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
         (473 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 473

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/473 (100%), Positives = 473/473 (100%)

Query: 1   MNQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILK 60
           MNQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILK
Sbjct: 1   MNQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILK 60

Query: 61  LATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLF 120
           LATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLF
Sbjct: 61  LATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLF 120

Query: 121 NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDI 180
           NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDI
Sbjct: 121 NVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDI 180

Query: 181 WNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQL 240
           WNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQL
Sbjct: 181 WNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQL 240

Query: 241 LQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQN 300
           LQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQN
Sbjct: 241 LQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQN 300

Query: 301 IANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIP 360
           IANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIP
Sbjct: 301 IANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIP 360

Query: 361 SFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSV 420
           SFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSV
Sbjct: 361 SFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSV 420

Query: 421 VLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473
           VLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL
Sbjct: 421 VLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 1576

 Score = 26.6 bits (57), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 54  EVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR 97
           EV  +++     N  I P G   G    ++P + R+D I+ I R
Sbjct: 801 EVLGLVRAQKVKNAVIVPVGAKGGFYPKRLPSEGRRDEIIKIGR 844


>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 133

 Score = 25.8 bits (55), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 276 PL-SDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWI--LPSLDEEKN 328
           PL +D   +Y+L+E+   + +  A+  AN+ L   FN++ L   +  LP + + K+
Sbjct: 70  PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125


>gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62]
          Length = 551

 Score = 23.9 bits (50), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 149 LATNAGGTAVLSYGNIRHLCLG 170
           LA  AGG AVL  G++    LG
Sbjct: 369 LAKLAGGVAVLEVGDVTEAALG 390


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.138    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,280
Number of Sequences: 1233
Number of extensions: 13885
Number of successful extensions: 31
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 5
length of query: 473
length of database: 328,796
effective HSP length: 77
effective length of query: 396
effective length of database: 233,855
effective search space: 92606580
effective search space used: 92606580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)