HHsearch alignment for GI: 254780762 and conserved domain: COG0353
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=534.82 Aligned_cols=197 Identities=44% Similarity=0.809 Sum_probs=194.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 68667999999997568999537999999997199899999999999999851828899973345654100355556736
Q gi|254780762|r 5 ITGKEIENLIKILARIPGFGPRSARRATLHLVKKKEQLLGPLAEAMANIYNKVCLCSICGNVDTTDPCAICIDQQRDASV 84 (201)
Q Consensus 5 ~~~~~l~~LI~~l~kLPGIG~KsA~R~a~~Ll~~~~~~~~~l~~~l~~~~~~i~~C~~C~~l~~~~~C~iC~d~~Rd~~~ 84 (201)
T Consensus 2 ~~~~~i~~LI~~l~kLPGvG~KsA~R~AfhLL~~~~~~~~~la~al~~a~~~i~~C~~C~~~te~d~C~ICsd~~Rd~~~ 81 (198)
T COG0353 2 MYPPPIEKLIDALKKLPGVGPKSAQRLAFHLLQRDREDVERLAKALLEAKENIKHCSVCGNLTESDPCDICSDESRDKSQ 81 (198)
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 77179999999997689988327999999997359989999999999999738635756782889867676986668866
Q ss_pred EEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 99983588999997517401342101210020002681112889999985157855499994699786899999999820
Q gi|254780762|r 85 IIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLK 164 (201)
Q Consensus 85 lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~lk 164 (201)
T Consensus 82 icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEGeaTA~YI~~~l~ 161 (198)
T COG0353 82 LCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEGEATALYIARLLK 161 (198)
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 89986649999999745257278884573373458991012679999998469975599965898643689999999975
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 1798088741467488206663479999998306479
Q gi|254780762|r 165 GIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTVL 201 (201)
Q Consensus 165 ~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~l 201 (201)
T Consensus 162 ~~~ikvtRlA~GiPvGg~lEyvD~~TL~~Al~~R~~i 198 (198)
T COG0353 162 PLGLKVTRLAQGVPVGGELEYVDEGTLSRALEGRRKI 198 (198)
T ss_pred HCCCEEEEEEECCCCCCCEECCCHHHHHHHHHCCCCC
T ss_conf 3597178776056567720205688899998437579