HHsearch alignment for GI: 254780762 and conserved domain: COG0353

>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=534.82  Aligned_cols=197  Identities=44%  Similarity=0.809  Sum_probs=194.6

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             68667999999997568999537999999997199899999999999999851828899973345654100355556736
Q gi|254780762|r    5 ITGKEIENLIKILARIPGFGPRSARRATLHLVKKKEQLLGPLAEAMANIYNKVCLCSICGNVDTTDPCAICIDQQRDASV   84 (201)
Q Consensus         5 ~~~~~l~~LI~~l~kLPGIG~KsA~R~a~~Ll~~~~~~~~~l~~~l~~~~~~i~~C~~C~~l~~~~~C~iC~d~~Rd~~~   84 (201)
T Consensus         2 ~~~~~i~~LI~~l~kLPGvG~KsA~R~AfhLL~~~~~~~~~la~al~~a~~~i~~C~~C~~~te~d~C~ICsd~~Rd~~~   81 (198)
T COG0353           2 MYPPPIEKLIDALKKLPGVGPKSAQRLAFHLLQRDREDVERLAKALLEAKENIKHCSVCGNLTESDPCDICSDESRDKSQ   81 (198)
T ss_pred             CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             77179999999997689988327999999997359989999999999999738635756782889867676986668866


Q ss_pred             EEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             99983588999997517401342101210020002681112889999985157855499994699786899999999820
Q gi|254780762|r   85 IIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLK  164 (201)
Q Consensus        85 lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~lk  164 (201)
T Consensus        82 icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEGeaTA~YI~~~l~  161 (198)
T COG0353          82 LCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEGEATALYIARLLK  161 (198)
T ss_pred             EEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             89986649999999745257278884573373458991012679999998469975599965898643689999999975


Q ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             1798088741467488206663479999998306479
Q gi|254780762|r  165 GIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTVL  201 (201)
Q Consensus       165 ~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~l  201 (201)
T Consensus       162 ~~~ikvtRlA~GiPvGg~lEyvD~~TL~~Al~~R~~i  198 (198)
T COG0353         162 PLGLKVTRLAQGVPVGGELEYVDEGTLSRALEGRRKI  198 (198)
T ss_pred             HCCCEEEEEEECCCCCCCEECCCHHHHHHHHHCCCCC
T ss_conf             3597178776056567720205688899998437579