HHsearch alignment for GI: 254780762 and conserved domain: PRK05582
>PRK05582 DNA topoisomerase I; Validated.
Probab=96.75 E-value=0.016 Score=38.39 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=63.7
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCC----CCCCHHH-C------------CHHHHHHHHCCCCCCEEE
Q ss_conf 36999835889999975174013421012--100200----0268111-2------------889999985157855499
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLG--GSLSPL----DRIGPED-I------------GIQSLIERIEVKKIRELI 143 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl----~g~~p~~-l------------~i~~L~~ri~~~~i~EVI 143 (201)
T Consensus 2 k~LvIvEkPskAk~Ia~~L--G~~y~V~~s~GHl~dL~~~~~g~~~~~~~~P~y~~~~~~~k~i~~lk~l~--k~ad~ii 77 (692)
T PRK05582 2 KNLIIVESPAKAKTIKKYL--GKNYEVIASKGHIRDLPKSSLGIDIEDNYTPKYIIIKDKKELVKKIKKLA--KKADKIY 77 (692)
T ss_pred CEEEEECCHHHHHHHHHHC--CCCCEEEECCCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH--HCCCEEE
T ss_conf 8399991879999999970--96989995255064367643687877788703787766799999999998--6599899
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r 144 FAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV 200 (201)
Q Consensus 144 lA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~ 200 (201)
T Consensus 78 iAtDpDREGE~Ia~~i~~~l~~~~~~~~Ri~f--------~eiT~~aI~~Al~n~~~ 126 (692)
T PRK05582 78 LATDPDREGEAISWHVADALKKDENELPRIVF--------NEITKNAIKNALKNPRK 126 (692)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE--------CCCCHHHHHHHHHCCCC
T ss_conf 89888712329999999996788887338898--------37999999999967752