HHsearch alignment for GI: 254780762 and conserved domain: PRK05582

>PRK05582 DNA topoisomerase I; Validated.
Probab=96.75  E-value=0.016  Score=38.39  Aligned_cols=106  Identities=21%  Similarity=0.319  Sum_probs=63.7

Q ss_pred             CEEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCC----CCCCHHH-C------------CHHHHHHHHCCCCCCEEE
Q ss_conf             36999835889999975174013421012--100200----0268111-2------------889999985157855499
Q gi|254780762|r   83 SVIIVVEDVADLWALERSKAVNALYHVLG--GSLSPL----DRIGPED-I------------GIQSLIERIEVKKIRELI  143 (201)
Q Consensus        83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl----~g~~p~~-l------------~i~~L~~ri~~~~i~EVI  143 (201)
T Consensus         2 k~LvIvEkPskAk~Ia~~L--G~~y~V~~s~GHl~dL~~~~~g~~~~~~~~P~y~~~~~~~k~i~~lk~l~--k~ad~ii   77 (692)
T PRK05582          2 KNLIIVESPAKAKTIKKYL--GKNYEVIASKGHIRDLPKSSLGIDIEDNYTPKYIIIKDKKELVKKIKKLA--KKADKIY   77 (692)
T ss_pred             CEEEEECCHHHHHHHHHHC--CCCCEEEECCCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH--HCCCEEE
T ss_conf             8399991879999999970--96989995255064367643687877788703787766799999999998--6599899


Q ss_pred             EEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r  144 FAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV  200 (201)
Q Consensus       144 lA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~  200 (201)
T Consensus        78 iAtDpDREGE~Ia~~i~~~l~~~~~~~~Ri~f--------~eiT~~aI~~Al~n~~~  126 (692)
T PRK05582         78 LATDPDREGEAISWHVADALKKDENELPRIVF--------NEITKNAIKNALKNPRK  126 (692)
T ss_pred             ECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE--------CCCCHHHHHHHHHCCCC
T ss_conf             89888712329999999996788887338898--------37999999999967752