HHsearch alignment for GI: 254780762 and conserved domain: PRK07561
>PRK07561 DNA topoisomerase I; Validated.
Probab=96.86 E-value=0.013 Score=38.94 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=67.1
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCCC------------------CCCHHH-------------CCHHH
Q ss_conf 36999835889999975174013421012--1002000------------------268111-------------28899
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLG--GSLSPLD------------------RIGPED-------------IGIQS 129 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl~------------------g~~p~~-------------l~i~~ 129 (201)
T Consensus 2 k~LVIVESPaKaktI~ky--LG~~y~V~AS~GHirDLp~~~~~vp~~~k~~~~~~~gvd~~~~f~p~y~i~~~kkk~v~~ 79 (878)
T PRK07561 2 STLVIVESPTKARTIRNF--LPKGYRVEASMGHVRDLPNSASEIPAAVKGEKWANLGVNVEADFEPLYVVPKDKKKVVKE 79 (878)
T ss_pred CCEEEEECCHHHHHHHHH--CCCCCEEEEECCCHHCCCCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCHHHHHHH
T ss_conf 848999373888999986--698979996066152057764557401112303105435588952677868768999999
Q ss_pred HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99985157855499994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r 130 LIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV 200 (201)
Q Consensus 130 L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~ 200 (201)
T Consensus 80 Lk~~~--k~ad~V~lATDpDREGEaIawhl~e~l~~-~~~vkRi~F~--------EITk~AI~~Ai~npr~ 139 (878)
T PRK07561 80 LKDAL--KGADELLLATDEDREGESISWHLLQLLKP-KVPTKRMVFH--------EITKEAIQKALDNTRE 139 (878)
T ss_pred HHHHH--HCCCEEEECCCCCCCCHHHHHHHHHHHCC-CCCEEEEEEE--------CCCHHHHHHHHHCCCC
T ss_conf 99998--57998998889971406999999998489-9970689994--------6899999999968541