HHsearch alignment for GI: 254780762 and conserved domain: PRK07561

>PRK07561 DNA topoisomerase I; Validated.
Probab=96.86  E-value=0.013  Score=38.94  Aligned_cols=105  Identities=20%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             CEEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCCC------------------CCCHHH-------------CCHHH
Q ss_conf             36999835889999975174013421012--1002000------------------268111-------------28899
Q gi|254780762|r   83 SVIIVVEDVADLWALERSKAVNALYHVLG--GSLSPLD------------------RIGPED-------------IGIQS  129 (201)
Q Consensus        83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl~------------------g~~p~~-------------l~i~~  129 (201)
T Consensus         2 k~LVIVESPaKaktI~ky--LG~~y~V~AS~GHirDLp~~~~~vp~~~k~~~~~~~gvd~~~~f~p~y~i~~~kkk~v~~   79 (878)
T PRK07561          2 STLVIVESPTKARTIRNF--LPKGYRVEASMGHVRDLPNSASEIPAAVKGEKWANLGVNVEADFEPLYVVPKDKKKVVKE   79 (878)
T ss_pred             CCEEEEECCHHHHHHHHH--CCCCCEEEEECCCHHCCCCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCHHHHHHH
T ss_conf             848999373888999986--698979996066152057764557401112303105435588952677868768999999


Q ss_pred             HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99985157855499994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r  130 LIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV  200 (201)
Q Consensus       130 L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~  200 (201)
T Consensus        80 Lk~~~--k~ad~V~lATDpDREGEaIawhl~e~l~~-~~~vkRi~F~--------EITk~AI~~Ai~npr~  139 (878)
T PRK07561         80 LKDAL--KGADELLLATDEDREGESISWHLLQLLKP-KVPTKRMVFH--------EITKEAIQKALDNTRE  139 (878)
T ss_pred             HHHHH--HCCCEEEECCCCCCCCHHHHHHHHHHHCC-CCCEEEEEEE--------CCCHHHHHHHHHCCCC
T ss_conf             99998--57998998889971406999999998489-9970689994--------6899999999968541