HHsearch alignment for GI: 254780762 and conserved domain: PRK07941

>PRK07941 DNA topoisomerase I; Validated.
Probab=96.41  E-value=0.033  Score=36.27  Aligned_cols=107  Identities=19%  Similarity=0.321  Sum_probs=68.0

Q ss_pred             CCCEEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCCC------------------CCCHHH-C------------CH
Q ss_conf             6736999835889999975174013421012--1002000------------------268111-2------------88
Q gi|254780762|r   81 DASVIIVVEDVADLWALERSKAVNALYHVLG--GSLSPLD------------------RIGPED-I------------GI  127 (201)
Q Consensus        81 d~~~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl~------------------g~~p~~-l------------~i  127 (201)
T Consensus         7 ~gK~LVIVESPaKaktI~ky--LG~~y~V~aS~GHIrDLp~~~~~v~~~~k~~~~~~~gvd~~~~f~p~y~v~~~kkk~v   84 (933)
T PRK07941          7 SGRRLVIVESPTKARKIAPY--LGSNYIVESSRGHIRDLPRAAADVPAKYKSEPWARLGVNVDADFEPLYIVSPDKKSTV   84 (933)
T ss_pred             CCCEEEEEECCHHHHHHHHH--CCCCCEEEECCCEEEECCCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCHHHHH
T ss_conf             99849999182888899986--5989899961676017777756564100245300033155778506778896579999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999985157855499994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r  128 QSLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV  200 (201)
Q Consensus       128 ~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~  200 (201)
T Consensus        85 ~~Lk~~~--k~ad~V~lATDpDREGEaIawhl~e~lk~-~~~vkRv~F~--------EITk~AI~~Al~npr~  146 (933)
T PRK07941         85 AELKGLL--KDVDELYLATDGDREGEAIAWHLLETLKP-RVPVKRMVFH--------EITEPAILAAAENPRD  146 (933)
T ss_pred             HHHHHHH--HCCCEEEECCCCCCCCHHHHHHHHHHHCC-CCCEEEEEEE--------CCCHHHHHHHHHCCCC
T ss_conf             9999999--65998998989972404999999998389-9874789992--------6899999999858300