HHsearch alignment for GI: 254780762 and conserved domain: PRK09137
>PRK09137 DNA topoisomerase I; Validated.
Probab=95.97 E-value=0.074 Score=33.92 Aligned_cols=105 Identities=23% Similarity=0.394 Sum_probs=60.2
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCC----CCCCHHH-C------------CHHHHHHHHCCCCCCEEE
Q ss_conf 36999835889999975174013421012--100200----0268111-2------------889999985157855499
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLG--GSLSPL----DRIGPED-I------------GIQSLIERIEVKKIRELI 143 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl----~g~~p~~-l------------~i~~L~~ri~~~~i~EVI 143 (201)
T Consensus 2 K~LvIvEsPskAk~I~~~L--G~~y~V~as~GHi~dL~~~~~~~d~~~~f~p~y~~~~~~kk~i~~lk~l~--k~ad~Ii 77 (761)
T PRK09137 2 KNLVIVESPAKAKTIEKYL--GNDFKVLASYGHVRDLPSKQGSVDPEDDFKMKYQVIERSKKHIDAIKKAA--KDADNLY 77 (761)
T ss_pred CEEEEECCHHHHHHHHHHH--CCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH--HCCCEEE
T ss_conf 7499985879999999971--94989999835343177645785725598444688964789999999998--3899899
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC----CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99469978689999999982017----980887414674882066634799999983064
Q gi|254780762|r 144 FAISATIEGQTTAHYIMDKLKGI----DVKITRLAYGIPMGSELDYLDDGTIFEAIRSRT 199 (201)
Q Consensus 144 lA~~~t~EGe~Ta~yi~~~lk~~----~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~ 199 (201)
T Consensus 78 lAtDpDREGE~Ia~~i~~~l~~~~~~~~k~v~Ri~f~--------eiT~~aI~~A~~np~ 129 (761)
T PRK09137 78 LATDPDREGEAISWHLLEVLKSKRLLKDKKVQRVVFH--------EITKSAVQDAIANPR 129 (761)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEE--------CCCHHHHHHHHHCCC
T ss_conf 8988880500999999999672335799845999980--------289999999986756