HHsearch alignment for GI: 254780762 and conserved domain: TIGR00615
>TIGR00615 recR recombination protein RecR; InterPro: IPR000093 The bacterial protein recR seems to play a role in a recombinational process of DNA repair . It may act with recF and recO. RecR is a protein of about 200 amino acid residues. This protein contains a putative C4-type zinc finger in the N-terminal section.; GO: 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00 E-value=0 Score=555.10 Aligned_cols=195 Identities=42% Similarity=0.778 Sum_probs=192.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCC-
Q ss_conf 686679999999975689995379999999971998999999999999998518288999--73345654100355556-
Q gi|254780762|r 5 ITGKEIENLIKILARIPGFGPRSARRATLHLVKKKEQLLGPLAEAMANIYNKVCLCSICG--NVDTTDPCAICIDQQRD- 81 (201)
Q Consensus 5 ~~~~~l~~LI~~l~kLPGIG~KsA~R~a~~Ll~~~~~~~~~l~~~l~~~~~~i~~C~~C~--~l~~~~~C~iC~d~~Rd- 81 (201)
T Consensus 2 ~~~~~~~~Lie~L~kLPgiG~KsA~RlAf~LL~~~~~~~~~la~aL~~a~~~~~~C~~C~Cl~~s~~~~C~ICsd~~Rde 81 (205)
T TIGR00615 2 QYPPPISKLIESLKKLPGIGPKSAQRLAFHLLKRDPSEVERLAQALLEAKEELRTCSVCGCLALSDQEVCNICSDERRDE 81 (205)
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 86668999999864078987147899999860789999999999999998714746567502114778777578887344
Q ss_pred CCEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHH----HHCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 736999835889999975174013421012100200026811128899999----8515785549999469978689999
Q gi|254780762|r 82 ASVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIE----RIEVKKIRELIFAISATIEGQTTAH 157 (201)
Q Consensus 82 ~~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~----ri~~~~i~EVIlA~~~t~EGe~Ta~ 157 (201)
T Consensus 82 ~s~iCvV~~p~Dv~a~E~~~~f~G~YhVL~G~isPl~Gigp~~~~i~~L~~riGeRl~~~~~~EVIlA~nPt~EGeaTa~ 161 (205)
T TIGR00615 82 NSVICVVEDPKDVFALEKTKEFRGRYHVLGGLISPLDGIGPEDLKIAALLKRIGERLQEESVKEVILATNPTVEGEATAL 161 (205)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEECCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 75368744726799987654216601431564176457683221468899886000000579778860789841347999
Q ss_pred HHHHHHCCC--CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999982017--980887414674882066634799999983064
Q gi|254780762|r 158 YIMDKLKGI--DVKITRLAYGIPMGSELDYLDDGTIFEAIRSRT 199 (201)
Q Consensus 158 yi~~~lk~~--~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~ 199 (201)
T Consensus 162 Yi~~~l~~~fP~~~~tRiA~G~PvGg~lE~~D~~TL~ral~gR~ 205 (205)
T TIGR00615 162 YIARLLRPLFPGVKVTRIASGLPVGGDLEYVDEVTLARALEGRR 205 (205)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999862389837865542242255156675799999840689