HHsearch alignment for GI: 254780762 and conserved domain: cd01025
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=100.00 E-value=3.1e-44 Score=318.90 Aligned_cols=112 Identities=49% Similarity=0.798 Sum_probs=110.5
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 36999835889999975174013421012100200026811128899999851578554999946997868999999998
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDK 162 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~ 162 (201)
T Consensus 1 n~lcVVe~~~Dl~~iE~s~~y~G~YhVL~G~lspl~g~~p~~l~i~~L~~ri~~~~i~EvIlA~~~t~EGe~Ta~yi~~~ 80 (112)
T cd01025 1 NKLCVVEEPRDVLAIEESGEYRGLYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVILATNPTVEGEATALYIAKL 80 (112)
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 97999898999999972175656999852634755699833031999999983589418999748996608999999998
Q ss_pred HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 20179808874146748820666347999999
Q gi|254780762|r 163 LKGIDVKITRLAYGIPMGSELDYLDDGTIFEA 194 (201)
Q Consensus 163 lk~~~ikitrla~GiP~G~~ley~D~~TL~~A 194 (201)
T Consensus 81 l~~~~ikitrLA~GiP~G~~ley~D~~TL~~A 112 (112)
T cd01025 81 LKDFGVKVTRLAQGIPVGGELEYADEITLSRA 112 (112)
T ss_pred HHHCCCCEEEEEECCCCCCCEEECCHHHHHCC
T ss_conf 54359727988744766874233578678529