HHsearch alignment for GI: 254780762 and conserved domain: pfam01751
>pfam01751 Toprim Toprim domain. This is a conserved region from DNA primase. This corresponds to the Toprim domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR proteins. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase EC:2.7.7.6 is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.
Probab=99.66 E-value=4.5e-16 Score=129.48 Aligned_cols=89 Identities=26% Similarity=0.326 Sum_probs=79.7
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 36999835889999975174013421012100200026811128899999851578554999946997868999999998
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDK 162 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~ 162 (201)
T Consensus 1 ~~l~IVE~~~d~~~i~~~~~~~~~~~~~~G~~~~l~~~~~~~~--~~l~~~~~~---~eViiatD~D~eGe~~a~~l~~~ 75 (89)
T pfam01751 1 KVLIIVEGPSDAIALAKAGGYKGNVVALLGHLSDVIPLTKEQL--KLLKKLAKK---DEVILATDPDREGEAIAWKLLEL 75 (89)
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEEEECEECCCCCCCHHHH--HHHHHHHCC---CEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9899989889999999624888799984157057655424679--999986237---74999879894899999999998
Q ss_pred HCCCCCEEEEEECC
Q ss_conf 20179808874146
Q gi|254780762|r 163 LKGIDVKITRLAYG 176 (201)
Q Consensus 163 lk~~~ikitrla~G 176 (201)
T Consensus 76 l~~~~~~v~ri~~~ 89 (89)
T pfam01751 76 LKPLGKKVRRIFLP 89 (89)
T ss_pred HHHCCCCEEEEECC
T ss_conf 31229816999669