HHsearch alignment of GI: 254780762 and MMDB domain: 2au3_A_225-349
>2au3_A (A:225-349) DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=92.41 E-value=0.59 Score=27.41 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=65.0
Q ss_pred CCCCEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 56736999835889999975174013421012100200026811128899999851578554999946997868999999
Q gi|254780762|r 80 RDASVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYI 159 (201)
Q Consensus 80 Rd~~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi 159 (201)
++...++|||-..|.+++-+.+ +.......|+.+++ .. +..| ....++|+|++...-.|+.-+..+
T Consensus 18 ~~~~~v~i~EG~~dals~~~~g-~~~~~~~~g~~~~~------~~--~~~l-----~~~~~~vvi~~D~D~aG~~~a~~~ 83 (125)
T 2au3_A 18 KEEGFAILVEGYFDLLRLFSEG-IRNVVAPLGTALTQ------NQ--ANLL-----SKFTKKVYILYDGDDAGRKAMKSA 83 (125)
T ss_dssp HHHTCEEECSSHHHHHHHHHTT-CCSEEEESSSSCCH------HH--HHHH-----HTTCSEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHCC-CCCCCCCCCCCCCH------HH--HHHH-----HHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 1344103304623567887618-65533431234336------88--9887-----612772367427867777557887
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCH
Q ss_conf 998201798088741467488206
Q gi|254780762|r 160 MDKLKGIDVKITRLAYGIPMGSEL 183 (201)
Q Consensus 160 ~~~lk~~~ikitrla~GiP~G~~l 183 (201)
.+.+...++++..+- +|-|-+.
T Consensus 84 ~~~l~~~~~~~~~~~--~p~~kD~ 105 (125)
T 2au3_A 84 IPLLLSAGVEVYPVY--LPEGYDP 105 (125)
T ss_dssp HHHHHHTTCEEEEEC--CCTTCCH
T ss_pred HHHHHCCCCCEEEEE--CCCCCCH
T ss_conf 765402365213665--8999884