HHsearch alignment of GI: 254780762 and MMDB domain: 2gai_A_1-35_63-127
>2gai_A (A:1-35,A:63-127) DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=93.30 E-value=0.15 Score=31.39 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=64.2
Q ss_pred CEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 36999835889999975174013421012100200026811128899999851578554999946997868999999998
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDK 162 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~ 162 (201)
....|||+|.-+..||.. .--.|-|.. ..|-.+ -++.|.+..+ ..+||+||.|.-|||.-+..|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~kkk-~i~~Lkkl~k---~adIIiATD~DREGE~Ia~eIl~~ 72 (100)
T 2gai_A 6 KKYIVVESPAKAKTIKSI--LGNEYEVFA-------SMGKEK-VVEKLKDLAK---KGELLIASDMDREGEAIAWHIARV 72 (100)
T ss_dssp -CEEEESCHHHHHHHHHH--HGGGSEEEE-------CCSCHH-HHHHHHHHHH---HSCEEECCCSSHHHHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHH--CCCCCEEEE-------ECCHHH-HHHHHHHHHC---CCCEEECCCCCCCCCHHHHHHHHH
T ss_conf 579998797999999998--094989996-------146699-9999999846---898999489981520999999998
Q ss_pred HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 2017980887414674882066634799999983064
Q gi|254780762|r 163 LKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRT 199 (201)
Q Consensus 163 lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~ 199 (201)
++. ..++.|+-+ .-+++..+.+||+|.+
T Consensus 73 ~~~-~kpvkRl~f--------sslT~~~I~~A~~nlR 100 (100)
T 2gai_A 73 TNT-LGRKNRIVF--------SEITPRVIREAVKNPR 100 (100)
T ss_dssp HTC-TTSSCBCCC--------SSCCHHHHHHHHHSCB
T ss_pred HCC-CCCEEEEEE--------ECCCHHHHHHHHHCCH
T ss_conf 588-898058997--------1079999999996816