HHSEARCH alignment of GI: 254780762 and SCOP domain: d1gkub3

Alignment

Probab=95.67  E-value=0.015  Score=35.52  Aligned_cols=54  Identities=20%  Similarity=0.251  Sum_probs=41.4

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             855499994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r  138 KIRELIFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV  200 (201)
Q Consensus       138 ~i~EVIlA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~  200 (201)
                      .+++||+|+.|.=|||+-+..|.+.++. ..+|.|+-+        .-+....+.+||.+.+.
T Consensus       124 ~ad~ii~AtD~DREGE~I~~~i~~~~~~-~~~v~R~~~--------~~~t~~~I~~a~~~l~~  177 (556)
T d1gkub3         124 DAEFVIVGTDPDTEGEKIAWDLKNLLSG-CGAVKRAEF--------HEVTRRAILEALESLRD  177 (556)
T ss_dssp             HHSEEEECCCSSHHHHHHHHHHHHHHTT-SSEEEECCC--------SBCSHHHHHHHHTSCBC
T ss_pred             HCCEEEECCCCCCCHHHHHHHHHHHHCC-CCCEEEEEE--------HHCCHHHHHHHHHHCCC
T ss_conf             0898998878873311999999998637-897379996--------21058988757752145

SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Prokaryotic type I DNA topoisomerase
superfamily: Prokaryotic type I DNA topoisomerase
family: Prokaryotic type I DNA topoisomerase
domain: Topoisomerase "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]