HHSEARCH alignment of GI: 254780762 and SCOP domain: d1vdda_

Alignment
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=0  Score=528.96  Aligned_cols=194  Identities=37%  Similarity=0.685  Sum_probs=190.2

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             86679999999975689995379999999971998999999999999998518288999733456541003555567369
Q gi|254780762|r    6 TGKEIENLIKILARIPGFGPRSARRATLHLVKKKEQLLGPLAEAMANIYNKVCLCSICGNVDTTDPCAICIDQQRDASVI   85 (201)
Q Consensus         6 ~~~~l~~LI~~l~kLPGIG~KsA~R~a~~Ll~~~~~~~~~l~~~l~~~~~~i~~C~~C~~l~~~~~C~iC~d~~Rd~~~l   85 (201)
                      +|++|++||++|++|||||||||+|||||||+++++++++|+++|.+++++|++|+.||+++++++|+||+|++||+++|
T Consensus         3 ~p~~i~~LI~~l~kLPGIG~KsA~Rla~~LL~~~~~~~~~l~~~l~~~~~~I~~C~~C~~l~e~~~C~iC~d~~Rd~~~i   82 (199)
T d1vdda_           3 YPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTI   82 (199)
T ss_dssp             CCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHCEECSSSCCEESSSSCHHHHCSSSCTTEE
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             96899999999987899889999999999983998899999999999998609898877042677744114767776469


Q ss_pred             EEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             99835889999975174013421012100200026811128899999851578554999946997868999999998201
Q gi|254780762|r   86 IVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKG  165 (201)
Q Consensus        86 CVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~lk~  165 (201)
                      ||||++.|+|+||+||.|+|+||||||+|||++|++|++|++++|++|+++  ++|||||||||+|||+||+||++.|++
T Consensus        83 CVVE~~~Dl~~iE~t~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~r~~~--~~EiIlA~~~t~EGe~Ta~yi~~~l~~  160 (199)
T d1vdda_          83 CVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQ--GMEVILATGTTVEGDATALYLQRLLEP  160 (199)
T ss_dssp             EEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCT--TCEEEECCCSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC--CCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             999668998999852310001554157558444877410112677775057--767999826986508999999998523


Q ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             798088741467488206663479999998306479
Q gi|254780762|r  166 IDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTVL  201 (201)
Q Consensus       166 ~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~l  201 (201)
                      .++||||||+|||+||+|||+|+.||++||++|++|
T Consensus       161 ~~ikitrlA~GiP~G~~ley~D~~TL~~Al~~R~~i  196 (199)
T d1vdda_         161 LGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTV  196 (199)
T ss_dssp             SSCEEEECCBCBCTTCCGGGSCHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCCC
T ss_conf             496287602268778310006899999999727247


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Recombination protein RecR
superfamily: Recombination protein RecR
family: Recombination protein RecR
domain: Recombination protein RecR
species: Deinococcus radiodurans [TaxId: 1299]